Wall clock time and date at job start Tue Mar 31 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47386 * 2 1 4 4 C 1.53003 * 109.46618 * 240.00386 * 2 1 3 5 5 C 1.53005 * 109.46872 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47221 * 60.00058 * 5 4 2 7 7 H 1.09001 * 109.46811 * 60.00127 * 6 5 4 8 8 C 1.50697 * 109.46949 * 180.02562 * 6 5 4 9 9 O 1.21275 * 120.00064 * 120.00120 * 8 6 5 10 10 N 1.34782 * 120.00142 * 299.99847 * 8 6 5 11 11 C 1.46491 * 119.99992 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47124 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47492 * 59.99348 * 12 11 10 14 14 C 1.53000 * 109.47004 * 299.99394 * 12 11 10 15 15 C 1.50699 * 109.47261 * 179.97438 * 12 11 10 16 16 H 1.07998 * 120.00226 * 357.70744 * 15 12 11 17 17 C 1.37876 * 120.00295 * 177.70496 * 15 12 11 18 18 N 1.31514 * 120.00507 * 195.66904 * 17 15 12 19 19 Si 1.86804 * 119.99737 * 15.94607 * 17 15 12 20 20 H 1.48507 * 109.47125 * 84.26422 * 19 17 15 21 21 H 1.48498 * 109.46993 * 204.25998 * 19 17 15 22 22 H 1.48500 * 109.47164 * 324.26073 * 19 17 15 23 23 C 1.52998 * 109.47024 * 300.00096 * 6 5 4 24 24 C 1.52998 * 109.47169 * 120.00782 * 2 1 3 25 25 H 1.08994 * 109.47524 * 59.99903 * 24 2 1 26 26 C 1.53003 * 109.47027 * 299.99353 * 24 2 1 27 27 H 1.09001 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47131 * 299.99348 * 1 2 3 29 29 H 1.09001 * 109.47347 * 59.99613 * 1 2 3 30 30 H 1.09001 * 109.47261 * 59.99948 * 4 2 1 31 31 H 1.08994 * 109.47417 * 299.99694 * 4 2 1 32 32 H 1.09002 * 109.47068 * 299.99415 * 5 4 2 33 33 H 1.09000 * 109.46683 * 180.02562 * 5 4 2 34 34 H 0.96997 * 119.99729 * 0.02562 * 10 8 6 35 35 H 1.09001 * 109.47381 * 59.99744 * 11 10 8 36 36 H 1.09008 * 109.47156 * 299.99528 * 11 10 8 37 37 H 1.09004 * 109.47231 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47411 * 300.00112 * 13 12 11 39 39 H 1.09008 * 109.47056 * 60.00655 * 13 12 11 40 40 H 1.09003 * 109.47184 * 309.32114 * 14 12 11 41 41 H 1.08996 * 109.46997 * 69.31963 * 14 12 11 42 42 H 1.09000 * 109.47294 * 189.32183 * 14 12 11 43 43 H 0.96998 * 120.00652 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.47135 * 180.02562 * 23 6 5 45 45 H 1.09002 * 109.47084 * 300.00433 * 23 6 5 46 46 H 1.09002 * 109.46966 * 60.00387 * 26 24 2 47 47 H 1.08997 * 109.47089 * 179.97438 * 26 24 2 48 48 H 1.08994 * 109.46927 * 300.00415 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 1 3.7175 -2.4695 -0.0004 8 6 5.5875 -1.4406 -0.0007 9 8 6.1936 -0.9151 0.9089 10 7 6.2618 -2.0236 -1.0116 11 6 7.7267 -2.0230 -1.0114 12 6 8.2371 -2.7432 -2.2611 13 6 7.7269 -2.0214 -3.5099 14 6 7.7278 -4.1859 -2.2621 15 6 9.7441 -2.7420 -2.2612 16 1 10.2838 -2.2424 -1.4704 17 6 10.4339 -3.3788 -3.2709 18 7 11.7127 -3.6493 -3.1248 19 14 9.5541 -3.8506 -4.8498 20 1 9.5325 -2.6863 -5.7714 21 1 10.2689 -4.9803 -5.4963 22 1 8.1614 -4.2603 -4.5370 23 6 3.5706 -0.7205 1.2487 24 6 2.0400 -0.7214 1.2491 25 1 1.6767 -1.7490 1.2491 26 6 1.5301 -0.0002 2.4985 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6765 -0.2073 -2.1393 31 1 1.6766 -1.7488 -1.2494 32 1 3.9329 0.3071 -1.2500 33 1 3.9331 -1.2341 -2.1400 34 1 5.7770 -2.4436 -1.7392 35 1 8.0901 -2.5369 -0.1215 36 1 8.0896 -0.9951 -1.0112 37 1 8.0910 -2.5342 -4.4002 38 1 6.6370 -2.0219 -3.5100 39 1 8.0899 -0.9935 -3.5092 40 1 7.9490 -4.6500 -1.3009 41 1 6.6507 -4.1908 -2.4286 42 1 8.2210 -4.7448 -3.0574 43 1 12.1981 -4.0970 -3.8353 44 1 3.9347 -1.2339 2.1387 45 1 3.9335 0.3073 1.2485 46 1 0.4401 -0.0002 2.4985 47 1 1.8931 -0.5144 3.3884 48 1 1.8935 1.0274 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458048307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:01 Heat of formation + Delta-G solvation = -85.173041 kcal Electronic energy + Delta-G solvation = -23273.944256 eV Core-core repulsion = 20133.842672 eV Total energy + Delta-G solvation = -3140.101584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32796 -39.50195 -38.27750 -35.07414 -34.17632 -33.22673 -32.85254 -28.60038 -28.00605 -27.77486 -27.07127 -26.11247 -23.15690 -22.62800 -21.01402 -20.83066 -20.57419 -18.29556 -17.91657 -16.96726 -16.76432 -16.46542 -15.67302 -15.45959 -15.26275 -15.01668 -14.88284 -14.79220 -14.53912 -14.32898 -14.00453 -13.76028 -13.52445 -13.47057 -12.93543 -12.89087 -12.65015 -12.59431 -12.42021 -12.35122 -12.12833 -11.94221 -11.82051 -11.79802 -11.74677 -11.40142 -11.17509 -11.09801 -10.81851 -10.62251 -10.58305 -10.35538 -9.97719 -8.31469 -6.32564 1.36433 1.38437 1.50845 1.71122 2.33553 2.34841 3.04710 3.66052 3.72463 3.75813 4.07163 4.11807 4.13904 4.26626 4.32551 4.39263 4.41876 4.52569 4.57361 4.64820 4.76254 4.77318 4.81798 4.84529 4.86875 4.93410 4.95711 4.97882 5.03810 5.06568 5.16436 5.17518 5.19301 5.21462 5.25600 5.35878 5.37493 5.44274 5.49156 5.55926 5.58869 5.69443 5.72408 5.80026 6.29714 6.66731 6.72800 7.31853 7.35524 8.85978 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.003649 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.256002 B = 7672.464456 C = 8200.595377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.059 0.941 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.096 4.096 7 H 0.118 0.882 8 C 0.505 3.495 9 O -0.595 6.595 10 N -0.710 5.710 11 C 0.157 3.843 12 C 0.029 3.971 13 C -0.144 4.144 14 C -0.143 4.143 15 C -0.523 4.523 16 H 0.024 0.976 17 C 0.017 3.983 18 N -0.946 5.946 19 Si 0.939 3.061 20 H -0.281 1.281 21 H -0.313 1.313 22 H -0.196 1.196 23 C -0.091 4.091 24 C -0.080 4.080 25 H 0.080 0.920 26 C -0.149 4.149 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.411 0.589 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.265 0.735 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.661 3.725 2.141 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.144 4.144 5 C -0.147 4.147 6 C -0.117 4.117 7 H 0.136 0.864 8 C 0.293 3.707 9 O -0.476 6.476 10 N -0.362 5.362 11 C 0.032 3.968 12 C 0.028 3.972 13 C -0.201 4.201 14 C -0.200 4.200 15 C -0.561 4.561 16 H 0.042 0.958 17 C -0.181 4.181 18 N -0.586 5.586 19 Si 0.768 3.232 20 H -0.208 1.208 21 H -0.242 1.242 22 H -0.120 1.120 23 C -0.129 4.129 24 C -0.098 4.098 25 H 0.099 0.901 26 C -0.206 4.206 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.249 0.751 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -27.073 4.026 2.719 27.505 hybrid contribution 1.124 -0.172 -0.668 1.318 sum -25.949 3.854 2.052 26.314 Atomic orbital electron populations 1.21857 0.94098 1.02293 1.02007 1.21190 0.96297 0.99101 0.94166 0.92210 1.21576 0.93039 1.01848 0.97940 1.21555 0.97424 1.00212 0.95501 1.21378 0.88195 1.03466 0.98660 0.86415 1.21479 0.91578 0.76750 0.80867 1.90658 1.71867 1.47230 1.37862 1.46089 1.07015 1.57766 1.25307 1.20995 0.79073 0.98771 0.97911 1.18634 0.93469 0.93285 0.91862 1.22235 1.00400 1.00053 0.97379 1.22273 0.99903 0.96898 1.00911 1.21048 0.90939 1.34537 1.09559 0.95792 1.25890 0.95341 0.94527 1.02306 1.70133 1.11517 1.42467 1.34444 0.86459 0.81462 0.76778 0.78535 1.20844 1.24236 1.11950 1.21369 0.95934 0.99834 0.95754 1.21155 0.92890 1.00490 0.95310 0.90131 1.21876 1.01725 1.00065 0.96904 0.92089 0.92226 0.92370 0.90569 0.90377 0.92764 0.90142 0.75077 0.94579 0.94410 0.94551 0.90702 0.93717 0.94281 0.91300 0.93346 0.92643 0.92967 0.93327 0.90947 0.93101 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.84 71.98 0.64 -0.83 16 2 C -0.09 -1.17 2.25 -10.79 -0.02 -1.20 16 3 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.30 5.20 30.60 0.16 -1.15 16 5 C -0.11 -1.82 5.10 30.60 0.16 -1.67 16 6 C -0.10 -2.01 2.53 -11.54 -0.03 -2.04 16 7 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 8 C 0.51 15.83 7.15 87.66 0.63 16.46 16 9 O -0.60 -24.60 15.98 -3.01 -0.05 -24.65 16 10 N -0.71 -21.75 4.90 -463.07 -2.27 -24.02 16 11 C 0.16 6.39 4.49 86.38 0.39 6.77 16 12 C 0.03 1.22 0.50 -52.93 -0.03 1.19 16 13 C -0.14 -5.29 7.63 71.98 0.55 -4.74 16 14 C -0.14 -5.36 7.49 71.98 0.54 -4.83 16 15 C -0.52 -29.20 8.61 25.60 0.22 -28.98 16 16 H 0.02 1.53 7.99 -2.91 -0.02 1.50 16 17 C 0.02 0.96 5.29 84.65 0.45 1.41 16 18 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 19 Si 0.94 42.13 22.80 68.60 1.56 43.69 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.31 -14.48 7.11 99.48 0.71 -13.78 16 22 H -0.20 -7.29 4.61 99.48 0.46 -6.83 16 23 C -0.09 -1.97 3.77 30.61 0.12 -1.86 16 24 C -0.08 -1.21 2.25 -10.77 -0.02 -1.23 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 C -0.15 -2.13 8.84 71.98 0.64 -1.49 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.58 6.43 -2.38 -0.02 0.57 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.16 7.57 -2.39 -0.02 1.14 16 34 H 0.41 9.81 5.68 -92.71 -0.53 9.29 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.04 1.38 2.59 -2.38 -0.01 1.38 16 38 H 0.07 2.06 6.86 -2.39 -0.02 2.04 16 39 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 41 H 0.07 1.95 7.13 -2.39 -0.02 1.94 16 42 H 0.05 1.92 3.96 -2.39 -0.01 1.91 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 45 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 46 H 0.07 0.81 6.43 -2.39 -0.02 0.80 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -71.05 349.51 4.06 -66.99 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.14 Total: 21.04 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 4.37 Total: -24.19 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.97 Total: -82.89 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.56 Total: 43.69 kcal Total: -71.05 4.06 -66.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.181 kcal (2) G-P(sol) polarization free energy of solvation -71.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds