Wall clock time and date at job start Tue Mar 31 2020 05:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47105 * 2 1 4 4 C 1.53008 * 109.46837 * 239.99933 * 2 1 3 5 5 C 1.52996 * 109.46929 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.46873 * 60.00410 * 5 4 2 7 7 H 1.09002 * 109.46794 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46921 * 59.99665 * 6 5 4 9 9 O 1.21277 * 120.00111 * 239.99496 * 8 6 5 10 10 N 1.34777 * 119.99780 * 60.00565 * 8 6 5 11 11 C 1.46500 * 120.00166 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47748 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.46851 * 59.99590 * 12 11 10 14 14 C 1.52997 * 109.46779 * 299.99957 * 12 11 10 15 15 C 1.50699 * 109.47339 * 179.97438 * 12 11 10 16 16 H 1.07998 * 119.99961 * 357.91141 * 15 12 11 17 17 C 1.37872 * 119.99847 * 177.90764 * 15 12 11 18 18 N 1.31510 * 120.00156 * 7.60223 * 17 15 12 19 19 Si 1.86800 * 120.00173 * 187.60304 * 17 15 12 20 20 H 1.48501 * 109.47094 * 265.12320 * 19 17 15 21 21 H 1.48507 * 109.47069 * 25.11589 * 19 17 15 22 22 H 1.48495 * 109.47573 * 145.12044 * 19 17 15 23 23 C 1.52998 * 109.47012 * 299.99561 * 6 5 4 24 24 C 1.52997 * 109.47129 * 120.00528 * 2 1 3 25 25 H 1.09000 * 109.47568 * 59.99515 * 24 2 1 26 26 C 1.52999 * 109.46899 * 299.99838 * 24 2 1 27 27 H 1.09004 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46622 * 299.99627 * 1 2 3 29 29 H 1.08996 * 109.47194 * 59.99776 * 1 2 3 30 30 H 1.09005 * 109.46822 * 59.99987 * 4 2 1 31 31 H 1.08998 * 109.47163 * 300.00585 * 4 2 1 32 32 H 1.09004 * 109.47223 * 300.00551 * 5 4 2 33 33 H 1.09001 * 109.47109 * 180.02562 * 5 4 2 34 34 H 0.96997 * 120.00342 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47098 * 59.98865 * 11 10 8 36 36 H 1.09012 * 109.46777 * 299.99919 * 11 10 8 37 37 H 1.08996 * 109.46836 * 185.79334 * 13 12 11 38 38 H 1.09002 * 109.47084 * 305.79115 * 13 12 11 39 39 H 1.08994 * 109.47141 * 65.79376 * 13 12 11 40 40 H 1.08999 * 109.47026 * 299.99422 * 14 12 11 41 41 H 1.09000 * 109.47568 * 59.99948 * 14 12 11 42 42 H 1.09001 * 109.46744 * 179.97438 * 14 12 11 43 43 H 0.97002 * 119.99976 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.46995 * 180.02562 * 23 6 5 45 45 H 1.08991 * 109.47310 * 300.00292 * 23 6 5 46 46 H 1.09002 * 109.47618 * 60.00239 * 26 24 2 47 47 H 1.09005 * 109.46946 * 180.02562 * 26 24 2 48 48 H 1.09002 * 109.47264 * 299.99624 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7208 -1.2497 6 6 4.0805 -1.4418 -0.0004 7 1 5.1705 -1.4418 -0.0009 8 6 3.5785 -2.8627 -0.0002 9 8 2.8816 -3.2595 0.9096 10 7 3.9042 -3.6926 -1.0110 11 6 3.4159 -5.0738 -1.0111 12 6 3.9255 -5.7949 -2.2606 13 6 5.4555 -5.7949 -2.2610 14 6 3.4151 -5.0734 -3.5095 15 6 3.4236 -7.2159 -2.2603 16 1 2.8313 -7.5792 -1.4335 17 6 3.7204 -8.0520 -3.3156 18 7 4.5621 -7.6613 -4.2475 19 14 2.9272 -9.7398 -3.4218 20 1 3.8343 -10.7517 -2.8230 21 1 1.6400 -9.7293 -2.6813 22 1 2.6766 -10.0805 -4.8452 23 6 3.5705 -0.7205 1.2489 24 6 2.0400 -0.7213 1.2491 25 1 1.6767 -1.7490 1.2492 26 6 1.5300 -0.0002 2.4984 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6766 -0.2074 -2.1393 31 1 1.6766 -1.7489 -1.2494 32 1 3.9329 0.3071 -1.2498 33 1 3.9333 -1.2342 -2.1399 34 1 4.4614 -3.3752 -1.7387 35 1 2.3259 -5.0737 -1.0111 36 1 3.7791 -5.5877 -0.1210 37 1 5.8185 -6.2162 -3.1984 38 1 5.8189 -4.7725 -2.1573 39 1 5.8190 -6.3960 -1.4276 40 1 2.3252 -5.0735 -3.5092 41 1 3.7785 -4.0458 -3.5095 42 1 3.7786 -5.5870 -4.3996 43 1 4.7706 -8.2494 -4.9902 44 1 3.9346 -1.2339 2.1388 45 1 3.9335 0.3072 1.2486 46 1 0.4400 -0.0001 2.4985 47 1 1.8938 -0.5138 3.3884 48 1 1.8934 1.0275 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:05 Heat of formation + Delta-G solvation = -79.263306 kcal Electronic energy + Delta-G solvation = -23814.900065 eV Core-core repulsion = 20675.054746 eV Total energy + Delta-G solvation = -3139.845319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37669 -37.83796 -36.19723 -33.62403 -32.85181 -31.87637 -30.72998 -27.47743 -26.17346 -25.72838 -25.39061 -24.65794 -22.12419 -21.74369 -20.04156 -19.22969 -18.69271 -16.48200 -15.75375 -15.58347 -15.14101 -14.67750 -14.51874 -14.35649 -14.01482 -13.89825 -13.48463 -12.97059 -12.85356 -12.47232 -12.21586 -12.09479 -11.91047 -11.79638 -11.73754 -11.57191 -11.40075 -11.32812 -11.17500 -10.87758 -10.80382 -10.68259 -10.43131 -10.30489 -10.18191 -9.92700 -9.90065 -9.61711 -9.38572 -9.01990 -8.78346 -8.40481 -8.23876 -6.02592 -4.10670 3.14373 3.27886 3.35627 3.40266 3.82828 4.40945 4.67392 4.73434 4.77494 5.02555 5.09009 5.24561 5.29245 5.36162 5.46970 5.51637 5.54596 5.63773 5.74015 5.81340 5.83364 5.89566 5.96929 6.04380 6.06881 6.11429 6.24357 6.26651 6.34595 6.35133 6.43668 6.45428 6.52603 6.73005 6.81968 6.84529 6.94578 7.02237 7.11582 7.37055 7.55754 7.70344 7.99509 8.09947 8.19434 8.39276 8.79918 8.90116 9.54520 10.99357 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.003978 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.804792 B = 7036.632124 C = 7137.680825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.063 0.937 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.111 4.111 7 H 0.091 0.909 8 C 0.511 3.489 9 O -0.549 6.549 10 N -0.717 5.717 11 C 0.133 3.867 12 C 0.055 3.945 13 C -0.128 4.128 14 C -0.128 4.128 15 C -0.507 4.507 16 H 0.057 0.943 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.274 1.274 22 H -0.286 1.286 23 C -0.089 4.089 24 C -0.102 4.102 25 H 0.104 0.896 26 C -0.144 4.144 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.396 0.604 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.004 0.996 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.008 0.992 42 H 0.080 0.920 43 H 0.259 0.741 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 16.310 5.639 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.156 4.156 5 C -0.147 4.147 6 C -0.133 4.133 7 H 0.109 0.891 8 C 0.297 3.703 9 O -0.428 6.428 10 N -0.368 5.368 11 C 0.010 3.990 12 C 0.055 3.945 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.546 4.546 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.523 5.523 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.198 1.198 22 H -0.212 1.212 23 C -0.127 4.127 24 C -0.120 4.120 25 H 0.122 0.878 26 C -0.201 4.201 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.023 0.977 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.027 0.973 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.158 15.927 6.104 17.192 hybrid contribution -0.039 -0.838 -0.521 0.987 sum -2.198 15.089 5.583 16.238 Atomic orbital electron populations 1.21878 0.95624 1.01937 1.01121 1.21145 0.95300 0.98903 0.94913 0.91859 1.21626 0.94973 1.01429 0.97524 1.21509 0.96357 1.00472 0.96313 1.21386 1.01244 0.93021 0.97639 0.89093 1.20464 0.80528 0.87175 0.82134 1.90578 1.38543 1.77329 1.36311 1.46348 1.52638 1.13479 1.24295 1.21655 0.97980 0.78957 1.00373 1.18354 0.92841 0.94196 0.89136 1.21853 0.97683 0.96055 1.03004 1.21778 0.98554 0.95865 1.02376 1.20973 1.33054 0.95109 1.05441 0.92491 1.24865 0.94658 0.98102 0.95740 1.69844 1.33193 1.36693 1.12539 0.86605 0.79953 0.84351 0.77261 1.20835 1.19844 1.21196 1.21331 0.95999 0.98995 0.96336 1.21461 0.94858 1.02212 0.93501 0.87838 1.21842 1.00795 0.99637 0.97852 0.92619 0.92614 0.93162 0.91974 0.91544 0.91208 0.91427 0.76859 0.92914 0.92921 0.89671 0.97747 0.95327 0.95418 0.97346 0.90164 0.93073 0.91563 0.92060 0.92757 0.92973 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16 2 C -0.08 -0.94 2.25 -90.62 -0.20 -1.15 16 3 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -1.41 4.98 -26.73 -0.13 -1.55 16 5 C -0.11 -1.20 5.36 -26.73 -0.14 -1.34 16 6 C -0.11 -1.40 3.01 -91.77 -0.28 -1.68 16 7 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 8 C 0.51 8.56 5.64 -10.99 -0.06 8.49 16 9 O -0.55 -10.94 13.66 5.56 0.08 -10.86 16 10 N -0.72 -12.55 4.80 -60.29 -0.29 -12.84 16 11 C 0.13 2.81 4.50 -4.04 -0.02 2.80 16 12 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 13 C -0.13 -2.89 8.07 37.16 0.30 -2.59 16 14 C -0.13 -2.85 8.06 37.16 0.30 -2.55 16 15 C -0.51 -13.30 8.00 -34.44 -0.28 -13.58 16 16 H 0.06 1.52 7.76 -52.49 -0.41 1.11 16 17 C 0.07 1.78 5.11 -17.82 -0.09 1.69 16 18 N -0.88 -23.55 9.48 55.43 0.53 -23.02 16 19 Si 0.89 20.74 29.54 -169.99 -5.02 15.71 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.09 -1.07 4.37 -26.71 -0.12 -1.18 16 24 C -0.10 -1.28 1.95 -90.60 -0.18 -1.46 16 25 H 0.10 1.66 5.51 -51.93 -0.29 1.38 16 26 C -0.14 -1.55 8.84 37.16 0.33 -1.22 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.54 6.43 -51.93 -0.33 0.20 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.98 7.22 -51.93 -0.37 0.60 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.74 7.57 -51.93 -0.39 0.35 16 34 H 0.40 6.34 5.58 -40.82 -0.23 6.12 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.08 2.11 6.16 -51.93 -0.32 1.79 16 38 H 0.00 0.07 6.72 -51.93 -0.35 -0.28 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 42 H 0.08 1.98 6.21 -51.93 -0.32 1.66 16 43 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 44 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.56 6.43 -51.93 -0.33 0.22 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -27.40 352.99 -8.46 -35.86 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.76 Total: 5.20 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -0.32 Total: -15.37 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.24 Total: -35.86 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.40 -8.46 -35.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.400 kcal (2) G-P(sol) polarization free energy of solvation -27.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds