Wall clock time and date at job start Tue Mar 31 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47105 * 2 1 4 4 C 1.53008 * 109.46837 * 239.99933 * 2 1 3 5 5 C 1.52996 * 109.46929 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.46873 * 60.00410 * 5 4 2 7 7 H 1.09002 * 109.46794 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46921 * 59.99665 * 6 5 4 9 9 O 1.21277 * 120.00111 * 239.99496 * 8 6 5 10 10 N 1.34777 * 119.99780 * 60.00565 * 8 6 5 11 11 C 1.46500 * 120.00166 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47748 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.46851 * 59.99590 * 12 11 10 14 14 C 1.52997 * 109.46779 * 299.99957 * 12 11 10 15 15 C 1.50699 * 109.47339 * 179.97438 * 12 11 10 16 16 H 1.07998 * 119.99961 * 357.91141 * 15 12 11 17 17 C 1.37872 * 119.99847 * 177.90764 * 15 12 11 18 18 N 1.31510 * 120.00156 * 7.60223 * 17 15 12 19 19 Si 1.86800 * 120.00173 * 187.60304 * 17 15 12 20 20 H 1.48501 * 109.47094 * 265.12320 * 19 17 15 21 21 H 1.48507 * 109.47069 * 25.11589 * 19 17 15 22 22 H 1.48495 * 109.47573 * 145.12044 * 19 17 15 23 23 C 1.52998 * 109.47012 * 299.99561 * 6 5 4 24 24 C 1.52997 * 109.47129 * 120.00528 * 2 1 3 25 25 H 1.09000 * 109.47568 * 59.99515 * 24 2 1 26 26 C 1.52999 * 109.46899 * 299.99838 * 24 2 1 27 27 H 1.09004 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46622 * 299.99627 * 1 2 3 29 29 H 1.08996 * 109.47194 * 59.99776 * 1 2 3 30 30 H 1.09005 * 109.46822 * 59.99987 * 4 2 1 31 31 H 1.08998 * 109.47163 * 300.00585 * 4 2 1 32 32 H 1.09004 * 109.47223 * 300.00551 * 5 4 2 33 33 H 1.09001 * 109.47109 * 180.02562 * 5 4 2 34 34 H 0.96997 * 120.00342 * 359.97438 * 10 8 6 35 35 H 1.09002 * 109.47098 * 59.98865 * 11 10 8 36 36 H 1.09012 * 109.46777 * 299.99919 * 11 10 8 37 37 H 1.08996 * 109.46836 * 185.79334 * 13 12 11 38 38 H 1.09002 * 109.47084 * 305.79115 * 13 12 11 39 39 H 1.08994 * 109.47141 * 65.79376 * 13 12 11 40 40 H 1.08999 * 109.47026 * 299.99422 * 14 12 11 41 41 H 1.09000 * 109.47568 * 59.99948 * 14 12 11 42 42 H 1.09001 * 109.46744 * 179.97438 * 14 12 11 43 43 H 0.97002 * 119.99976 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.46995 * 180.02562 * 23 6 5 45 45 H 1.08991 * 109.47310 * 300.00292 * 23 6 5 46 46 H 1.09002 * 109.47618 * 60.00239 * 26 24 2 47 47 H 1.09005 * 109.46946 * 180.02562 * 26 24 2 48 48 H 1.09002 * 109.47264 * 299.99624 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7208 -1.2497 6 6 4.0805 -1.4418 -0.0004 7 1 5.1705 -1.4418 -0.0009 8 6 3.5785 -2.8627 -0.0002 9 8 2.8816 -3.2595 0.9096 10 7 3.9042 -3.6926 -1.0110 11 6 3.4159 -5.0738 -1.0111 12 6 3.9255 -5.7949 -2.2606 13 6 5.4555 -5.7949 -2.2610 14 6 3.4151 -5.0734 -3.5095 15 6 3.4236 -7.2159 -2.2603 16 1 2.8313 -7.5792 -1.4335 17 6 3.7204 -8.0520 -3.3156 18 7 4.5621 -7.6613 -4.2475 19 14 2.9272 -9.7398 -3.4218 20 1 3.8343 -10.7517 -2.8230 21 1 1.6400 -9.7293 -2.6813 22 1 2.6766 -10.0805 -4.8452 23 6 3.5705 -0.7205 1.2489 24 6 2.0400 -0.7213 1.2491 25 1 1.6767 -1.7490 1.2492 26 6 1.5300 -0.0002 2.4984 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6766 -0.2074 -2.1393 31 1 1.6766 -1.7489 -1.2494 32 1 3.9329 0.3071 -1.2498 33 1 3.9333 -1.2342 -2.1399 34 1 4.4614 -3.3752 -1.7387 35 1 2.3259 -5.0737 -1.0111 36 1 3.7791 -5.5877 -0.1210 37 1 5.8185 -6.2162 -3.1984 38 1 5.8189 -4.7725 -2.1573 39 1 5.8190 -6.3960 -1.4276 40 1 2.3252 -5.0735 -3.5092 41 1 3.7785 -4.0458 -3.5095 42 1 3.7786 -5.5870 -4.3996 43 1 4.7706 -8.2494 -4.9902 44 1 3.9346 -1.2339 2.1388 45 1 3.9335 0.3072 1.2486 46 1 0.4400 -0.0001 2.4985 47 1 1.8938 -0.5138 3.3884 48 1 1.8934 1.0275 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458048308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:04 Heat of formation + Delta-G solvation = -93.065539 kcal Electronic energy + Delta-G solvation = -23815.498574 eV Core-core repulsion = 20675.054746 eV Total energy + Delta-G solvation = -3140.443829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56787 -39.13468 -37.84919 -35.09681 -34.12234 -32.82897 -32.49482 -28.42627 -27.59872 -27.57140 -27.12649 -26.03461 -23.33327 -22.67890 -21.05783 -20.62657 -20.38142 -18.03177 -17.45089 -16.83180 -16.58209 -16.36956 -15.63459 -15.45431 -15.13495 -14.97106 -14.80263 -14.66947 -14.35880 -13.99783 -13.59176 -13.27707 -13.06133 -13.04323 -12.87546 -12.69105 -12.66219 -12.64569 -12.57936 -12.46245 -12.25867 -12.23685 -12.14278 -11.73305 -11.50239 -11.38480 -11.18700 -10.81720 -10.79997 -10.74872 -10.38125 -10.34394 -9.82232 -8.04209 -6.17959 1.40246 1.43870 1.52760 1.82019 2.37842 2.53942 3.19576 3.71817 3.78826 3.84345 4.02771 4.18516 4.29779 4.42989 4.47106 4.51634 4.53929 4.64077 4.68254 4.72290 4.76194 4.85650 4.93320 4.97274 4.99305 5.01788 5.05107 5.10493 5.14316 5.15391 5.18341 5.21818 5.23003 5.35318 5.37487 5.41432 5.54836 5.56959 5.63319 5.65755 5.67517 5.84458 6.12934 6.21102 6.42592 6.77450 6.85569 7.45327 7.49048 8.95295 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.003978 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.804792 B = 7036.632124 C = 7137.680825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.088 0.912 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.105 4.105 7 H 0.116 0.884 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.713 5.713 11 C 0.151 3.849 12 C 0.051 3.949 13 C -0.116 4.116 14 C -0.116 4.116 15 C -0.532 4.532 16 H 0.041 0.959 17 C 0.031 3.969 18 N -0.897 5.897 19 Si 0.942 3.058 20 H -0.280 1.280 21 H -0.277 1.277 22 H -0.280 1.280 23 C -0.088 4.088 24 C -0.104 4.104 25 H 0.060 0.940 26 C -0.140 4.140 27 H 0.030 0.970 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.014 0.986 40 H 0.017 0.983 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.260 0.740 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.054 0.946 47 H 0.042 0.958 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 18.996 5.299 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.157 4.157 5 C -0.143 4.143 6 C -0.126 4.126 7 H 0.134 0.866 8 C 0.295 3.705 9 O -0.466 6.466 10 N -0.364 5.364 11 C 0.027 3.973 12 C 0.050 3.950 13 C -0.174 4.174 14 C -0.174 4.174 15 C -0.570 4.570 16 H 0.059 0.941 17 C -0.169 4.169 18 N -0.535 5.535 19 Si 0.768 3.232 20 H -0.206 1.206 21 H -0.202 1.202 22 H -0.206 1.206 23 C -0.126 4.126 24 C -0.123 4.123 25 H 0.078 0.922 26 C -0.197 4.197 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.033 0.967 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.345 18.629 5.755 19.544 hybrid contribution -0.328 -1.678 -0.371 1.750 sum -1.673 16.951 5.384 17.864 Atomic orbital electron populations 1.21875 0.95657 1.00698 1.02258 1.21142 0.95340 0.99698 0.93661 0.89370 1.21640 0.96017 0.99451 0.98618 1.21555 0.95316 1.02111 0.95276 1.21467 1.02536 0.89582 0.98983 0.86638 1.21366 0.79466 0.88741 0.80882 1.90582 1.39980 1.78352 1.37646 1.46184 1.52955 1.12046 1.25238 1.21150 0.96555 0.80940 0.98626 1.18356 0.93295 0.93124 0.90211 1.21676 0.97011 0.97590 1.01155 1.21604 0.97823 0.97263 1.00695 1.21252 1.33368 0.97107 1.05285 0.94073 1.25418 0.95075 1.00807 0.95588 1.69937 1.33465 1.37466 1.12636 0.85804 0.78959 0.81120 0.77276 1.20586 1.20200 1.20575 1.21370 0.95423 1.00467 0.95322 1.21387 0.95518 1.00204 0.95165 0.92185 1.21804 1.00876 1.00468 0.96599 0.95058 0.91550 0.91946 0.90573 0.95325 0.87885 0.91157 0.75666 0.95005 0.94934 0.91775 0.94516 0.96700 0.96384 0.94190 0.92395 0.93016 0.93142 0.88765 0.92689 0.93834 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.84 71.98 0.64 -2.33 16 2 C -0.08 -1.61 2.25 -10.79 -0.02 -1.63 16 3 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.12 -2.63 4.98 30.60 0.15 -2.48 16 5 C -0.11 -1.94 5.36 30.60 0.16 -1.78 16 6 C -0.10 -2.36 3.01 -11.54 -0.03 -2.39 16 7 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 8 C 0.51 16.81 5.64 87.66 0.49 17.31 16 9 O -0.58 -24.11 13.66 -3.02 -0.04 -24.15 16 10 N -0.71 -24.61 4.80 -463.05 -2.22 -26.83 16 11 C 0.15 6.58 4.50 86.38 0.39 6.97 16 12 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 13 C -0.12 -5.22 8.07 71.98 0.58 -4.64 16 14 C -0.12 -5.14 8.06 71.98 0.58 -4.56 16 15 C -0.53 -28.57 8.00 25.60 0.20 -28.36 16 16 H 0.04 2.28 7.76 -2.91 -0.02 2.25 16 17 C 0.03 1.66 5.11 84.65 0.43 2.09 16 18 N -0.90 -47.98 9.48 21.44 0.20 -47.78 16 19 Si 0.94 42.98 29.54 68.60 2.03 45.00 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 23 C -0.09 -1.90 4.37 30.61 0.13 -1.77 16 24 C -0.10 -2.50 1.95 -10.78 -0.02 -2.52 16 25 H 0.06 2.00 5.51 -2.39 -0.01 1.98 16 26 C -0.14 -2.80 8.84 71.98 0.64 -2.16 16 27 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.17 6.43 -2.39 -0.02 1.15 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.03 0.84 7.22 -2.39 -0.02 0.82 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.29 7.57 -2.39 -0.02 1.27 16 34 H 0.41 12.21 5.58 -92.71 -0.52 11.70 16 35 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.06 3.17 6.16 -2.39 -0.01 3.15 16 38 H 0.04 1.36 6.72 -2.39 -0.02 1.34 16 39 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 42 H 0.06 2.84 6.21 -2.39 -0.01 2.83 16 43 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 44 H 0.05 1.24 8.10 -2.39 -0.02 1.23 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.05 1.07 6.43 -2.39 -0.02 1.05 16 47 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -61.36 352.99 4.66 -56.70 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.40 Total: 22.96 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.30 Total: -25.90 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -2.02 Total: -74.61 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.04 Total: -24.15 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -61.36 4.66 -56.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.364 kcal (2) G-P(sol) polarization free energy of solvation -61.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds