Wall clock time and date at job start Tue Mar 31 2020 06:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47685 * 2 1 4 4 C 1.42897 * 114.00321 * 180.02562 * 3 2 1 5 5 H 1.09000 * 112.94693 * 18.59391 * 4 3 2 6 6 C 1.53947 * 113.65911 * 247.18626 * 4 3 2 7 7 C 1.53949 * 87.29636 * 270.25791 * 6 4 3 8 8 H 1.09008 * 113.74322 * 89.75089 * 7 6 4 9 9 N 1.46895 * 113.66780 * 220.79870 * 7 6 4 10 10 C 1.46900 * 110.99982 * 252.19015 * 9 7 6 11 11 C 1.53007 * 109.47410 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46766 * 59.99776 * 11 10 9 13 13 C 1.52998 * 109.47117 * 300.00175 * 11 10 9 14 14 C 1.50700 * 109.47420 * 179.97438 * 11 10 9 15 15 H 1.08003 * 119.99549 * 356.66071 * 14 11 10 16 16 C 1.37869 * 120.00078 * 176.66465 * 14 11 10 17 17 N 1.31515 * 119.99985 * 6.40727 * 16 14 11 18 18 Si 1.86803 * 120.00006 * 186.41503 * 16 14 11 19 19 H 1.48496 * 109.46746 * 265.09403 * 18 16 14 20 20 H 1.48500 * 109.47230 * 145.09739 * 18 16 14 21 21 H 1.48495 * 109.46986 * 25.09742 * 18 16 14 22 22 C 1.52906 * 86.78398 * 335.27049 * 7 6 4 23 23 C 1.52908 * 121.13632 * 259.18172 * 22 7 6 24 24 C 1.53951 * 86.78103 * 209.37528 * 23 22 7 25 25 C 1.52907 * 121.14121 * 150.61512 * 22 7 6 26 26 H 1.09001 * 109.47231 * 300.00165 * 1 2 3 27 27 H 1.08997 * 109.47279 * 59.99844 * 1 2 3 28 28 H 1.09004 * 109.47786 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46842 * 239.99504 * 2 1 3 30 30 H 1.09001 * 109.46576 * 120.00255 * 2 1 3 31 31 H 1.09004 * 113.57736 * 155.65667 * 6 4 3 32 32 H 1.09000 * 113.58585 * 24.86167 * 6 4 3 33 33 H 1.00895 * 111.00841 * 128.23182 * 9 7 6 34 34 H 1.09001 * 109.47380 * 59.99432 * 10 9 7 35 35 H 1.09004 * 109.47493 * 299.99423 * 10 9 7 36 36 H 1.09000 * 109.46810 * 174.48467 * 12 11 10 37 37 H 1.08999 * 109.47030 * 294.48615 * 12 11 10 38 38 H 1.08998 * 109.47195 * 54.48752 * 12 11 10 39 39 H 1.09001 * 109.46736 * 299.99569 * 13 11 10 40 40 H 1.09001 * 109.47000 * 59.99440 * 13 11 10 41 41 H 1.08996 * 109.47224 * 179.97438 * 13 11 10 42 42 H 0.97004 * 120.00063 * 180.02562 * 17 16 14 43 43 H 1.08997 * 113.66276 * 323.84188 * 23 22 7 44 44 H 1.08996 * 113.66681 * 94.90662 * 23 22 7 45 45 H 1.08997 * 113.58243 * 270.12314 * 24 23 22 46 46 H 1.09005 * 113.57963 * 139.33174 * 24 23 22 47 47 H 1.09004 * 113.66283 * 265.09225 * 25 22 7 48 48 H 1.08999 * 113.65945 * 36.05624 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9295 0.5452 -0.3210 6 6 4.0042 2.0536 1.2990 7 6 3.8586 3.4393 0.6443 8 1 2.8927 3.9109 0.8253 9 7 4.9910 4.3374 0.9067 10 6 4.6119 5.4024 1.8448 11 6 5.8145 6.3150 2.0935 12 6 6.2647 6.9373 0.7702 13 6 6.9618 5.4961 2.6883 14 6 5.4254 7.4079 3.0554 15 1 4.4070 7.4796 3.4079 16 6 6.3693 8.3163 3.4852 17 7 7.5758 8.3082 2.9619 18 14 5.9345 9.5584 4.8110 19 1 5.5108 10.8321 4.1760 20 1 7.1221 9.8037 5.6681 21 1 4.8251 9.0268 5.6426 22 6 3.9467 2.7176 -0.7009 23 6 5.2477 2.6981 -1.5040 24 6 4.3674 2.6037 -2.7634 25 6 3.2495 3.2730 -1.9433 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 5.0387 1.7679 1.4896 32 1 3.3586 1.9108 2.1656 33 1 5.3527 4.7239 0.0478 34 1 4.2915 4.9591 2.7877 35 1 3.7942 5.9856 1.4212 36 1 7.0569 7.6614 0.9602 37 1 6.6381 6.1551 0.1093 38 1 5.4197 7.4388 0.2985 39 1 6.6411 5.0528 3.6311 40 1 7.2431 4.7058 1.9923 41 1 7.8187 6.1462 2.8651 42 1 8.2401 8.9471 3.2646 43 1 5.8172 3.6250 -1.4368 44 1 5.8568 1.8113 -1.3286 45 1 4.1380 1.5801 -3.0594 46 1 4.7253 3.2144 -3.5923 47 1 2.2623 2.8455 -2.1189 48 1 3.2561 4.3616 -1.9987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731377.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:32 Heat of formation + Delta-G solvation = -9.779982 kcal Electronic energy + Delta-G solvation = -23410.833372 eV Core-core repulsion = 20274.001076 eV Total energy + Delta-G solvation = -3136.832296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.69989 -37.37573 -36.51050 -34.50346 -32.51560 -31.02079 -29.90878 -25.73388 -25.53009 -25.22079 -24.78676 -24.25707 -22.94964 -22.50321 -20.62003 -18.43085 -18.10394 -16.68339 -16.06628 -15.80534 -15.51692 -15.32123 -14.65109 -14.55470 -13.99846 -13.51852 -13.03922 -12.92871 -12.80178 -12.53514 -12.42649 -12.24071 -11.91124 -11.71781 -11.59506 -11.54440 -11.33110 -11.16847 -10.93478 -10.87875 -10.60956 -10.55423 -10.26857 -10.18751 -10.02019 -9.97879 -9.82256 -9.32958 -9.28496 -8.91279 -8.61311 -8.21296 -7.60666 -5.88147 -3.97328 3.33346 3.40824 3.42189 3.45011 4.46790 4.51206 4.60991 4.69010 4.81545 4.89329 4.93798 5.00855 5.12289 5.16622 5.19141 5.30141 5.37276 5.47697 5.53718 5.71247 5.72988 5.81031 5.87502 5.90820 5.97607 6.08326 6.11306 6.20677 6.34224 6.38954 6.45116 6.54974 6.65614 6.79523 6.94214 7.13623 7.22499 7.24836 7.42594 7.53613 7.78708 7.83447 7.91583 8.07212 8.27597 8.38730 8.61603 9.04077 9.67153 11.12298 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.003861 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.853971 B = 7250.168941 C = 7842.446030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.363 6.363 4 C 0.089 3.911 5 H 0.070 0.930 6 C -0.140 4.140 7 C 0.081 3.919 8 H 0.070 0.930 9 N -0.672 5.672 10 C 0.075 3.925 11 C 0.069 3.931 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.506 4.506 15 H 0.051 0.949 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.107 4.107 23 C -0.103 4.103 24 C -0.142 4.142 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.336 0.664 34 H 0.055 0.945 35 H 0.011 0.989 36 H 0.085 0.915 37 H 0.010 0.990 38 H 0.015 0.985 39 H 0.017 0.983 40 H 0.020 0.980 41 H 0.072 0.928 42 H 0.257 0.743 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -15.716 -9.439 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.030 3.970 5 H 0.088 0.912 6 C -0.179 4.179 7 C -0.029 4.029 8 H 0.088 0.912 9 N -0.304 5.304 10 C -0.053 4.053 11 C 0.068 3.932 12 C -0.190 4.190 13 C -0.175 4.175 14 C -0.544 4.544 15 H 0.069 0.931 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.715 3.285 19 H -0.210 1.210 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.108 4.108 23 C -0.141 4.141 24 C -0.179 4.179 25 C -0.162 4.162 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.104 0.896 37 H 0.029 0.971 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.921 -15.843 -8.926 19.835 hybrid contribution -0.709 1.071 0.287 1.317 sum -8.630 -14.772 -8.639 19.166 Atomic orbital electron populations 1.21738 0.93890 1.02023 1.03176 1.22488 0.95415 0.84164 0.99845 1.87883 1.19932 1.25802 1.94562 1.22656 0.81040 0.96236 0.97070 0.91162 1.23537 1.01383 0.96617 0.96316 1.22674 0.93921 0.92940 0.93398 0.91240 1.60736 1.30656 1.21923 1.17074 1.22194 0.98127 0.90780 0.94229 1.18090 0.90511 0.91427 0.93150 1.21856 1.00937 0.99759 0.96473 1.21608 1.01039 0.97640 0.97263 1.21131 0.95500 1.11844 1.25958 0.93051 1.24875 0.95141 0.97146 0.96382 1.69843 1.04028 1.36572 1.41878 0.86677 0.77932 0.81626 0.82313 1.20990 1.21251 1.20008 1.22997 0.97692 0.96375 0.93725 1.22507 0.94710 1.02828 0.94032 1.22862 0.97537 1.00598 0.96947 1.22629 0.98183 1.00190 0.95165 0.91791 0.91940 0.91291 0.93650 0.93446 0.88662 0.91555 0.84299 0.92681 0.97068 0.89642 0.97116 0.96535 0.96342 0.96054 0.90950 0.93252 0.88904 0.91407 0.90778 0.91581 0.91150 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.15 0.38 -0.85 16 2 C 0.06 0.55 6.50 37.15 0.24 0.79 16 3 O -0.36 -4.64 9.84 -35.23 -0.35 -4.98 16 4 C 0.09 1.10 4.17 -26.28 -0.11 0.99 16 5 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 6 C -0.14 -1.99 7.72 -25.75 -0.20 -2.19 16 7 C 0.08 1.29 3.98 -67.27 -0.27 1.02 16 8 H 0.07 1.21 7.87 -51.92 -0.41 0.80 16 9 N -0.67 -12.18 5.54 -106.25 -0.59 -12.77 16 10 C 0.08 1.62 4.43 -3.82 -0.02 1.61 16 11 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 12 C -0.13 -3.17 7.85 37.16 0.29 -2.88 16 13 C -0.12 -2.90 8.06 37.16 0.30 -2.60 16 14 C -0.51 -13.86 8.01 -34.44 -0.28 -14.13 16 15 H 0.05 1.42 7.75 -52.48 -0.41 1.01 16 16 C 0.07 1.79 5.12 -17.82 -0.09 1.70 16 17 N -0.88 -24.74 9.36 55.43 0.52 -24.22 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.11 -1.40 0.91 -154.72 -0.14 -1.54 16 23 C -0.10 -1.24 7.37 -26.28 -0.19 -1.44 16 24 C -0.14 -1.52 8.08 -25.75 -0.21 -1.72 16 25 C -0.12 -1.53 7.71 -26.28 -0.20 -1.73 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.34 6.02 5.04 -39.29 -0.20 5.83 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.01 0.24 8.13 -51.93 -0.42 -0.18 16 36 H 0.08 2.27 5.98 -51.93 -0.31 1.96 16 37 H 0.01 0.22 6.86 -51.93 -0.36 -0.14 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 41 H 0.07 1.95 6.06 -51.93 -0.31 1.63 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.09 1.21 6.67 -51.93 -0.35 0.86 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.87 7.83 -51.93 -0.41 0.47 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -27.83 366.34 -9.53 -37.36 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -9.03 Total: 4.12 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -0.58 Total: -21.38 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.07 Total: -36.99 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.35 Total: -4.98 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.83 -9.53 -37.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731377.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.578 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds