Wall clock time and date at job start Tue Mar 31 2020 06:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47481 * 2 1 4 4 C 1.42901 * 113.99838 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.88544 * 341.34291 * 4 3 2 6 6 C 1.53947 * 113.66508 * 112.81489 * 4 3 2 7 7 C 1.53957 * 87.29681 * 89.73645 * 6 4 3 8 8 H 1.09004 * 113.74513 * 270.24868 * 7 6 4 9 9 N 1.46894 * 113.65953 * 139.20726 * 7 6 4 10 10 C 1.46904 * 110.99880 * 107.81521 * 9 7 6 11 11 C 1.52998 * 109.46819 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47378 * 60.00065 * 11 10 9 13 13 C 1.53005 * 109.47585 * 299.99604 * 11 10 9 14 14 C 1.50703 * 109.46899 * 180.02562 * 11 10 9 15 15 H 1.07994 * 120.00338 * 4.88302 * 14 11 10 16 16 C 1.37883 * 119.99886 * 184.88647 * 14 11 10 17 17 N 1.31508 * 120.00035 * 351.67501 * 16 14 11 18 18 Si 1.86796 * 119.99944 * 171.67070 * 16 14 11 19 19 H 1.48504 * 109.47157 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47041 * 119.99857 * 18 16 14 21 21 H 1.48498 * 109.47596 * 239.99989 * 18 16 14 22 22 C 1.52907 * 86.78107 * 24.73193 * 7 6 4 23 23 C 1.52907 * 121.13586 * 209.38004 * 22 7 6 24 24 C 1.53949 * 86.78366 * 209.38583 * 23 22 7 25 25 C 1.52907 * 121.13276 * 100.82005 * 22 7 6 26 26 H 1.08999 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46758 * 299.99956 * 1 2 3 28 28 H 1.08996 * 109.46836 * 59.99499 * 1 2 3 29 29 H 1.09003 * 109.46758 * 240.00044 * 2 1 3 30 30 H 1.08996 * 109.46836 * 120.00501 * 2 1 3 31 31 H 1.08999 * 113.57798 * 335.13640 * 6 4 3 32 32 H 1.09001 * 113.58161 * 204.34160 * 6 4 3 33 33 H 1.00907 * 110.99719 * 231.76276 * 9 7 6 34 34 H 1.09000 * 109.46933 * 59.99700 * 10 9 7 35 35 H 1.09002 * 109.47239 * 299.99556 * 10 9 7 36 36 H 1.08998 * 109.46724 * 172.90902 * 12 11 10 37 37 H 1.08996 * 109.46474 * 292.90938 * 12 11 10 38 38 H 1.08998 * 109.46462 * 52.90930 * 12 11 10 39 39 H 1.08998 * 109.47002 * 307.52706 * 13 11 10 40 40 H 1.09008 * 109.46523 * 67.51975 * 13 11 10 41 41 H 1.08990 * 109.47405 * 187.52075 * 13 11 10 42 42 H 0.97001 * 120.00624 * 5.69577 * 17 16 14 43 43 H 1.08996 * 113.66121 * 323.86151 * 23 22 7 44 44 H 1.08997 * 113.66024 * 94.91642 * 23 22 7 45 45 H 1.09005 * 113.57999 * 270.13416 * 24 23 22 46 46 H 1.08993 * 113.58236 * 139.33753 * 24 23 22 47 47 H 1.09001 * 113.66466 * 265.08779 * 25 22 7 48 48 H 1.08999 * 113.66567 * 36.14465 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.9288 0.5448 0.3203 6 6 4.0033 2.0539 -1.3004 7 6 3.8582 3.4395 -0.6452 8 1 2.8922 3.9112 -0.8253 9 7 4.9905 4.3375 -0.9084 10 6 4.6106 5.4028 -1.8459 11 6 5.8127 6.3161 -2.0943 12 6 6.9603 5.4980 -2.6899 13 6 6.2630 6.9381 -0.7709 14 6 5.4228 7.4093 -3.0555 15 1 4.3991 7.4960 -3.3884 16 6 6.3731 8.2990 -3.5101 17 7 7.5785 8.2990 -2.9844 18 14 5.9484 9.5041 -4.8726 19 1 4.5375 9.3022 -5.2900 20 1 6.1236 10.8931 -4.3773 21 1 6.8460 9.2755 -6.0333 22 6 3.9473 2.7174 0.6997 23 6 3.2511 3.2725 1.9428 24 6 4.3696 2.6031 2.7619 25 6 5.2490 2.6977 1.5017 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.3570 1.9114 -2.1665 32 1 5.0377 1.7683 -1.4920 33 1 5.3528 4.7239 -0.0495 34 1 3.7933 5.9859 -1.4214 35 1 4.2895 4.9598 -2.7886 36 1 7.7692 6.1670 -2.9834 37 1 7.3259 4.7901 -1.9461 38 1 6.6031 4.9542 -3.5644 39 1 5.4100 7.4082 -0.2816 40 1 6.6698 6.1607 -0.1240 41 1 7.0298 7.6881 -0.9642 42 1 7.8252 7.6207 -2.3363 43 1 3.2591 4.3610 1.9992 44 1 2.2641 2.8450 2.1190 45 1 4.1404 1.5793 3.0577 46 1 4.7282 3.2135 3.5906 47 1 5.8580 1.8109 1.3257 48 1 5.8186 3.6246 1.4343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:47 Heat of formation + Delta-G solvation = -3.953363 kcal Electronic energy + Delta-G solvation = -23468.011430 eV Core-core repulsion = 20331.431795 eV Total energy + Delta-G solvation = -3136.579635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.76437 -37.44813 -36.87882 -34.71405 -32.69810 -30.97849 -29.69109 -25.88699 -25.77621 -25.53656 -24.64657 -24.15803 -22.97962 -22.44372 -20.68664 -18.61680 -18.21359 -17.04211 -16.37958 -15.98976 -15.65762 -15.36984 -14.73211 -14.29226 -13.70746 -13.58533 -13.21385 -13.05184 -12.87281 -12.66823 -12.47742 -12.39531 -12.05642 -11.78720 -11.66728 -11.62351 -11.35831 -11.15654 -11.03259 -10.95336 -10.63707 -10.50615 -10.40754 -10.32188 -10.09184 -10.05145 -9.84632 -9.57968 -9.33574 -9.19571 -8.35356 -8.06086 -7.72949 -6.13257 -3.96466 3.37491 3.48018 3.51154 3.64881 4.44986 4.51702 4.58753 4.64025 4.76494 4.83532 4.89189 4.96496 5.05448 5.10280 5.15151 5.24348 5.42267 5.45166 5.49519 5.67233 5.68225 5.74554 5.81016 5.87673 5.91903 6.01829 6.05731 6.14093 6.23224 6.24695 6.35889 6.40738 6.53428 6.58724 6.71704 6.86133 6.98139 7.14636 7.20125 7.25364 7.30529 7.71756 7.75872 7.86455 8.04265 8.42481 8.54806 8.99052 9.74481 11.12668 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024566 B = 0.003880 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.505212 B = 7214.214911 C = 7817.178815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.363 6.363 4 C 0.089 3.911 5 H 0.071 0.929 6 C -0.140 4.140 7 C 0.081 3.919 8 H 0.071 0.929 9 N -0.673 5.673 10 C 0.083 3.917 11 C 0.054 3.946 12 C -0.130 4.130 13 C -0.145 4.145 14 C -0.587 4.587 15 H 0.046 0.954 16 C 0.024 3.976 17 N -0.921 5.921 18 Si 1.067 2.933 19 H -0.291 1.291 20 H -0.289 1.289 21 H -0.288 1.288 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.104 4.104 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.335 0.665 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.068 0.932 42 H 0.283 0.717 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 -16.240 9.456 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.031 3.969 5 H 0.089 0.911 6 C -0.178 4.178 7 C -0.030 4.030 8 H 0.088 0.912 9 N -0.305 5.305 10 C -0.046 4.046 11 C 0.053 3.947 12 C -0.188 4.188 13 C -0.203 4.203 14 C -0.626 4.626 15 H 0.065 0.935 16 C -0.180 4.180 17 N -0.562 5.562 18 Si 0.897 3.103 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.214 1.214 22 C -0.108 4.108 23 C -0.162 4.162 24 C -0.179 4.179 25 C -0.141 4.141 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.194 -15.198 8.095 19.069 hybrid contribution -1.132 -0.936 1.327 1.979 sum -9.325 -16.134 9.421 20.881 Atomic orbital electron populations 1.21740 0.93848 1.02056 1.03187 1.22496 0.95451 0.84109 0.99866 1.87884 1.19877 1.25868 1.94556 1.22648 0.81102 0.96224 0.96970 0.91109 1.23534 1.01404 0.96510 0.96389 1.22679 0.93841 0.92902 0.93536 0.91166 1.60756 1.30876 1.21867 1.17031 1.22070 0.97588 0.90510 0.94398 1.18265 0.91189 0.92291 0.92945 1.21822 1.00136 0.98297 0.98560 1.22083 1.00655 0.99826 0.97741 1.21922 0.96763 1.15375 1.28504 0.93539 1.25602 0.93921 0.98949 0.99493 1.70775 1.21198 1.35049 1.29201 0.83582 0.74927 0.75838 0.75977 1.21724 1.21595 1.21443 1.23000 0.97714 0.96401 0.93676 1.22630 0.98248 1.00164 0.95123 1.22862 0.97487 1.00658 0.96912 1.22507 0.94711 1.02771 0.94115 0.91254 0.91936 0.91776 0.93427 0.93625 0.91495 0.88679 0.84421 0.96878 0.92438 0.92170 0.95444 0.95223 0.95379 0.96240 0.91352 0.90083 0.90242 0.91070 0.90711 0.91558 0.91369 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.54 6.50 37.16 0.24 0.79 16 3 O -0.36 -4.59 9.84 -35.23 -0.35 -4.94 16 4 C 0.09 1.10 4.17 -26.28 -0.11 0.99 16 5 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 6 C -0.14 -1.97 7.72 -25.75 -0.20 -2.17 16 7 C 0.08 1.27 3.98 -67.27 -0.27 1.00 16 8 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 9 N -0.67 -12.05 5.68 -106.25 -0.60 -12.65 16 10 C 0.08 1.78 4.42 -3.82 -0.02 1.77 16 11 C 0.05 1.31 0.57 -155.65 -0.09 1.23 16 12 C -0.13 -3.16 7.87 37.16 0.29 -2.86 16 13 C -0.14 -3.40 7.65 37.16 0.28 -3.12 16 14 C -0.59 -16.35 8.00 -34.44 -0.28 -16.62 16 15 H 0.05 1.32 7.76 -52.49 -0.41 0.91 16 16 C 0.02 0.68 5.07 -17.82 -0.09 0.59 16 17 N -0.92 -27.14 12.16 55.43 0.67 -26.47 16 18 Si 1.07 25.44 29.91 -169.99 -5.08 20.36 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.11 -1.38 0.91 -154.71 -0.14 -1.52 16 23 C -0.12 -1.51 7.71 -26.28 -0.20 -1.71 16 24 C -0.14 -1.49 8.08 -25.75 -0.21 -1.70 16 25 C -0.10 -1.22 7.37 -26.28 -0.19 -1.42 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.34 5.89 5.09 -39.29 -0.20 5.69 16 34 H 0.01 0.29 8.13 -51.93 -0.42 -0.13 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.59 5.17 -51.93 -0.27 1.32 16 37 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.64 8.13 -51.93 -0.42 0.21 16 40 H 0.02 0.39 6.94 -51.92 -0.36 0.03 16 41 H 0.07 1.77 5.30 -51.93 -0.28 1.50 16 42 H 0.28 8.13 3.59 -40.82 -0.15 7.98 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.87 7.83 -51.93 -0.41 0.47 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.17 6.67 -51.93 -0.35 0.82 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -29.20 363.21 -9.25 -38.45 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.77 Total: 5.39 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -0.59 Total: -25.61 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.07 Total: -39.12 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.35 Total: -4.94 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.20 -9.25 -38.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.496 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds