Wall clock time and date at job start Tue Mar 31 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46748 * 2 1 4 4 C 1.37093 * 120.00190 * 264.74237 * 3 2 1 5 5 H 1.08000 * 120.00254 * 146.16051 * 4 3 2 6 6 C 1.38951 * 120.00174 * 326.16926 * 4 3 2 7 7 N 1.31417 * 119.99631 * 337.68742 * 6 4 3 8 8 Si 1.86800 * 120.00319 * 157.68690 * 6 4 3 9 9 H 1.48498 * 109.47036 * 59.99912 * 8 6 4 10 10 H 1.48496 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46886 * 300.00097 * 8 6 4 12 12 C 1.34782 * 119.99993 * 84.75066 * 3 2 1 13 13 O 1.21288 * 119.99859 * 179.97438 * 12 3 2 14 14 C 1.50696 * 119.99975 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47224 * 180.02562 * 14 12 3 16 16 C 1.53003 * 109.47261 * 59.99901 * 15 14 12 17 17 C 1.53003 * 109.47178 * 300.00141 * 15 14 12 18 18 C 1.53007 * 109.47397 * 180.02562 * 15 14 12 19 19 C 1.52992 * 109.47090 * 59.99762 * 18 15 14 20 20 C 1.53001 * 109.47137 * 180.02562 * 19 18 15 21 21 C 1.52998 * 109.46782 * 299.99911 * 20 19 18 22 22 C 1.53002 * 109.47237 * 60.00173 * 21 20 19 23 23 C 1.52998 * 109.47067 * 179.97438 * 18 15 14 24 24 H 1.08996 * 109.46819 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46992 * 300.00038 * 1 2 3 26 26 H 1.09004 * 109.47217 * 59.99889 * 1 2 3 27 27 H 1.08996 * 109.47655 * 240.00228 * 2 1 3 28 28 H 1.08998 * 109.46986 * 119.99736 * 2 1 3 29 29 H 0.97000 * 119.99692 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46931 * 60.00573 * 14 12 3 31 31 H 1.08998 * 109.47684 * 300.00407 * 14 12 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.46997 * 300.00415 * 16 15 14 34 34 H 1.09002 * 109.46632 * 60.00062 * 16 15 14 35 35 H 1.09006 * 109.47234 * 299.99961 * 17 15 14 36 36 H 1.08998 * 109.47013 * 59.99625 * 17 15 14 37 37 H 1.09000 * 109.47561 * 180.02562 * 17 15 14 38 38 H 1.08997 * 109.46370 * 299.99605 * 18 15 14 39 39 H 1.09005 * 109.47439 * 60.00399 * 19 18 15 40 40 H 1.09004 * 109.47366 * 300.00136 * 19 18 15 41 41 H 1.08996 * 109.47304 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47087 * 60.00217 * 20 19 18 43 43 H 1.09006 * 109.46904 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47640 * 299.99718 * 21 20 19 45 45 H 1.09002 * 109.46974 * 59.99485 * 22 21 20 46 46 H 1.09000 * 109.46910 * 179.97438 * 22 21 20 47 47 H 1.09006 * 109.47023 * 60.00003 * 23 18 15 48 48 H 1.09002 * 109.47559 * 299.99899 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3493 1.9913 -1.1822 5 1 2.1814 3.0507 -1.3089 6 6 2.9007 1.2468 -2.2177 7 7 3.5052 0.1089 -1.9592 8 14 2.7829 1.8632 -3.9772 9 1 3.4563 3.1822 -4.0857 10 1 3.4448 0.8938 -4.8867 11 1 1.3544 2.0039 -4.3577 12 6 2.1422 2.0523 1.1624 13 8 2.5468 3.1956 1.1624 14 6 1.7779 1.3818 2.4619 15 6 2.0085 2.3548 3.6199 16 6 1.1358 3.5963 3.4244 17 6 3.4815 2.7671 3.6540 18 6 1.6393 1.6739 4.9394 19 6 2.5123 0.4328 5.1346 20 6 2.1427 -0.2484 6.4538 21 6 2.3729 0.7244 7.6120 22 6 1.4998 1.9656 7.4168 23 6 1.8704 2.6468 6.0974 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8898 -0.4111 -2.6821 30 1 2.3994 0.4972 2.6010 31 1 0.7285 1.0884 2.4378 32 1 1.2998 4.2892 4.2496 33 1 1.3993 4.0812 2.4844 34 1 0.0864 3.3025 3.4000 35 1 4.1033 1.8827 3.7933 36 1 3.7449 3.2520 2.7141 37 1 3.6459 3.4600 4.4793 38 1 0.5899 1.3800 4.9153 39 1 3.5617 0.7268 5.1587 40 1 2.3481 -0.2604 4.3096 41 1 2.7650 -1.1323 6.5931 42 1 1.0934 -0.5425 6.4293 43 1 2.1091 0.2392 8.5519 44 1 3.4221 1.0185 7.6366 45 1 0.4505 1.6715 7.3924 46 1 1.6635 2.6584 8.2423 47 1 1.2487 3.5313 5.9585 48 1 2.9199 2.9405 6.1214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000475169549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:48 Heat of formation + Delta-G solvation = -64.902302 kcal Electronic energy + Delta-G solvation = -24100.589834 eV Core-core repulsion = 20961.367255 eV Total energy + Delta-G solvation = -3139.222579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -39.86264 -38.18459 -35.58996 -34.35536 -32.00820 -30.81770 -29.50241 -29.20725 -27.61157 -26.70470 -24.64616 -22.88442 -22.35946 -22.04576 -20.03771 -18.93006 -17.64442 -16.74031 -16.17818 -15.21767 -14.78240 -14.44780 -14.28356 -14.14472 -14.07729 -13.78893 -13.40096 -13.06758 -12.90765 -12.74463 -12.23115 -12.03781 -11.97075 -11.76507 -11.61463 -11.34396 -11.21085 -11.04507 -10.99564 -10.85335 -10.72553 -10.67847 -10.47645 -10.32950 -10.31321 -10.12457 -10.00086 -9.84522 -9.69200 -9.56290 -8.85278 -8.02989 -7.40016 -6.27907 -3.88204 3.21578 3.27498 3.31352 4.00621 4.20034 4.71510 4.79659 4.83089 4.98932 5.08318 5.25650 5.27517 5.44486 5.51610 5.58900 5.61060 5.62368 5.73491 5.77716 5.85287 5.90977 6.04034 6.05528 6.06422 6.15647 6.18769 6.24123 6.28461 6.31680 6.33319 6.36271 6.37790 6.41813 6.46290 6.54789 6.58843 6.62626 6.75179 6.81131 6.94979 7.14893 7.25936 7.32608 7.64583 8.31697 8.59196 9.27676 9.51141 10.12692 10.75615 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.004374 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.431756 B = 6399.709435 C = 6704.177938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.306 4.306 5 H 0.090 0.910 6 C 0.035 3.965 7 N -0.871 5.871 8 Si 0.915 3.085 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.461 3.539 13 O -0.574 6.574 14 C -0.126 4.126 15 C -0.035 4.035 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.074 4.074 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.116 4.116 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.267 0.733 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.476 -2.052 14.127 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.162 5.162 4 C -0.433 4.433 5 H 0.108 0.892 6 C -0.169 4.169 7 N -0.510 5.510 8 Si 0.742 3.258 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.250 3.750 13 O -0.459 6.459 14 C -0.166 4.166 15 C -0.035 4.035 16 C -0.208 4.208 17 C -0.209 4.209 18 C -0.093 4.093 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.171 -1.650 13.991 14.693 hybrid contribution -0.112 -0.103 -0.837 0.851 sum -4.284 -1.754 13.154 13.944 Atomic orbital electron populations 1.22208 0.98424 1.00192 1.01410 1.21558 0.91568 0.85754 1.03945 1.43554 1.55830 1.11754 1.05072 1.19399 1.39487 0.95359 0.89104 0.89182 1.25293 0.94681 0.96547 1.00360 1.69921 1.32854 1.15359 1.32830 0.86182 0.78546 0.78722 0.82377 1.19822 1.21066 1.20028 1.20291 0.82044 0.87859 0.84798 1.90358 1.50337 1.18794 1.86404 1.21750 1.01689 0.99066 0.94097 1.20163 0.96531 0.94749 0.92053 1.22126 0.97658 0.97329 1.03666 1.22167 0.94654 1.00500 1.03544 1.21178 0.99106 0.94760 0.94237 1.21722 1.00299 0.97000 0.96700 1.21538 1.01157 0.97780 0.95135 1.21527 1.00022 0.96216 0.97821 1.21551 0.99553 0.96899 0.97619 1.21692 1.01850 0.98162 0.93646 0.93255 0.93924 0.92566 0.87044 0.93566 0.92319 0.90395 0.90986 0.93798 0.89123 0.94412 0.93903 0.89171 0.93932 0.91861 0.91599 0.91718 0.92464 0.92335 0.92710 0.92202 0.92371 0.92604 0.91874 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.15 37.16 0.38 -2.62 16 2 C 0.10 2.10 5.44 -4.04 -0.02 2.08 16 3 N -0.44 -11.12 2.56 -114.81 -0.29 -11.42 16 4 C -0.31 -8.44 8.98 -14.93 -0.13 -8.58 16 5 H 0.09 2.61 7.70 -52.49 -0.40 2.20 16 6 C 0.03 0.92 4.92 -17.47 -0.09 0.83 16 7 N -0.87 -23.48 11.33 55.50 0.63 -22.85 16 8 Si 0.91 20.68 29.61 -169.99 -5.03 15.65 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.46 10.92 7.00 -10.99 -0.08 10.84 16 13 O -0.57 -15.01 11.17 5.55 0.06 -14.95 16 14 C -0.13 -2.31 3.02 -27.89 -0.08 -2.40 16 15 C -0.03 -0.56 0.32 -154.50 -0.05 -0.61 16 16 C -0.15 -2.54 7.83 37.16 0.29 -2.25 16 17 C -0.15 -2.63 7.47 37.16 0.28 -2.36 16 18 C -0.07 -0.98 1.55 -90.62 -0.14 -1.12 16 19 C -0.12 -1.51 4.50 -26.73 -0.12 -1.63 16 20 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 21 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 22 C -0.12 -1.21 5.93 -26.71 -0.16 -1.37 16 23 C -0.12 -1.39 4.50 -26.71 -0.12 -1.51 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.73 6.59 -51.93 -0.34 0.39 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.11 2.70 5.34 -51.93 -0.28 2.42 16 28 H 0.05 0.93 6.66 -51.93 -0.35 0.58 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.08 1.40 5.70 -51.93 -0.30 1.10 16 31 H 0.07 1.24 6.53 -51.93 -0.34 0.90 16 32 H 0.04 0.66 6.43 -51.93 -0.33 0.32 16 33 H 0.09 1.85 5.51 -51.93 -0.29 1.56 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.71 6.43 -51.93 -0.33 0.38 16 36 H 0.09 1.91 5.51 -51.93 -0.29 1.63 16 37 H 0.04 0.65 6.43 -51.93 -0.33 0.32 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 40 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 48 H 0.06 0.81 6.43 -51.93 -0.33 0.47 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -28.56 343.70 -8.10 -36.65 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.28 Total: 5.19 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.36 Total: -13.44 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.34 Total: -34.27 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.06 Total: -14.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.56 -8.10 -36.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475169549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.248 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds