Wall clock time and date at job start Tue Mar 31 2020 06:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46748 * 2 1 4 4 C 1.37093 * 120.00190 * 264.74237 * 3 2 1 5 5 H 1.08000 * 120.00254 * 146.16051 * 4 3 2 6 6 C 1.38951 * 120.00174 * 326.16926 * 4 3 2 7 7 N 1.31417 * 119.99631 * 337.68742 * 6 4 3 8 8 Si 1.86800 * 120.00319 * 157.68690 * 6 4 3 9 9 H 1.48498 * 109.47036 * 59.99912 * 8 6 4 10 10 H 1.48496 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46886 * 300.00097 * 8 6 4 12 12 C 1.34782 * 119.99993 * 84.75066 * 3 2 1 13 13 O 1.21288 * 119.99859 * 179.97438 * 12 3 2 14 14 C 1.50696 * 119.99975 * 359.97438 * 12 3 2 15 15 C 1.52997 * 109.47224 * 180.02562 * 14 12 3 16 16 C 1.53003 * 109.47261 * 59.99901 * 15 14 12 17 17 C 1.53003 * 109.47178 * 300.00141 * 15 14 12 18 18 C 1.53007 * 109.47397 * 180.02562 * 15 14 12 19 19 C 1.52992 * 109.47090 * 59.99762 * 18 15 14 20 20 C 1.53001 * 109.47137 * 180.02562 * 19 18 15 21 21 C 1.52998 * 109.46782 * 299.99911 * 20 19 18 22 22 C 1.53002 * 109.47237 * 60.00173 * 21 20 19 23 23 C 1.52998 * 109.47067 * 179.97438 * 18 15 14 24 24 H 1.08996 * 109.46819 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46992 * 300.00038 * 1 2 3 26 26 H 1.09004 * 109.47217 * 59.99889 * 1 2 3 27 27 H 1.08996 * 109.47655 * 240.00228 * 2 1 3 28 28 H 1.08998 * 109.46986 * 119.99736 * 2 1 3 29 29 H 0.97000 * 119.99692 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46931 * 60.00573 * 14 12 3 31 31 H 1.08998 * 109.47684 * 300.00407 * 14 12 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.46997 * 300.00415 * 16 15 14 34 34 H 1.09002 * 109.46632 * 60.00062 * 16 15 14 35 35 H 1.09006 * 109.47234 * 299.99961 * 17 15 14 36 36 H 1.08998 * 109.47013 * 59.99625 * 17 15 14 37 37 H 1.09000 * 109.47561 * 180.02562 * 17 15 14 38 38 H 1.08997 * 109.46370 * 299.99605 * 18 15 14 39 39 H 1.09005 * 109.47439 * 60.00399 * 19 18 15 40 40 H 1.09004 * 109.47366 * 300.00136 * 19 18 15 41 41 H 1.08996 * 109.47304 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47087 * 60.00217 * 20 19 18 43 43 H 1.09006 * 109.46904 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47640 * 299.99718 * 21 20 19 45 45 H 1.09002 * 109.46974 * 59.99485 * 22 21 20 46 46 H 1.09000 * 109.46910 * 179.97438 * 22 21 20 47 47 H 1.09006 * 109.47023 * 60.00003 * 23 18 15 48 48 H 1.09002 * 109.47559 * 299.99899 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3493 1.9913 -1.1822 5 1 2.1814 3.0507 -1.3089 6 6 2.9007 1.2468 -2.2177 7 7 3.5052 0.1089 -1.9592 8 14 2.7829 1.8632 -3.9772 9 1 3.4563 3.1822 -4.0857 10 1 3.4448 0.8938 -4.8867 11 1 1.3544 2.0039 -4.3577 12 6 2.1422 2.0523 1.1624 13 8 2.5468 3.1956 1.1624 14 6 1.7779 1.3818 2.4619 15 6 2.0085 2.3548 3.6199 16 6 1.1358 3.5963 3.4244 17 6 3.4815 2.7671 3.6540 18 6 1.6393 1.6739 4.9394 19 6 2.5123 0.4328 5.1346 20 6 2.1427 -0.2484 6.4538 21 6 2.3729 0.7244 7.6120 22 6 1.4998 1.9656 7.4168 23 6 1.8704 2.6468 6.0974 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8898 -0.4111 -2.6821 30 1 2.3994 0.4972 2.6010 31 1 0.7285 1.0884 2.4378 32 1 1.2998 4.2892 4.2496 33 1 1.3993 4.0812 2.4844 34 1 0.0864 3.3025 3.4000 35 1 4.1033 1.8827 3.7933 36 1 3.7449 3.2520 2.7141 37 1 3.6459 3.4600 4.4793 38 1 0.5899 1.3800 4.9153 39 1 3.5617 0.7268 5.1587 40 1 2.3481 -0.2604 4.3096 41 1 2.7650 -1.1323 6.5931 42 1 1.0934 -0.5425 6.4293 43 1 2.1091 0.2392 8.5519 44 1 3.4221 1.0185 7.6366 45 1 0.4505 1.6715 7.3924 46 1 1.6635 2.6584 8.2423 47 1 1.2487 3.5313 5.9585 48 1 2.9199 2.9405 6.1214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000475169549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:46 Heat of formation + Delta-G solvation = -78.530350 kcal Electronic energy + Delta-G solvation = -24101.180790 eV Core-core repulsion = 20961.367255 eV Total energy + Delta-G solvation = -3139.813536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.26139 -39.66360 -37.17029 -35.85419 -33.97576 -31.74028 -31.15523 -30.40137 -29.11683 -28.09367 -26.53041 -24.09117 -23.75787 -23.15722 -21.20534 -20.34830 -19.03007 -18.66368 -17.82853 -16.93463 -16.11387 -15.97864 -15.90918 -15.41212 -15.05336 -14.91598 -14.83856 -14.51420 -14.40961 -14.18700 -13.60225 -13.56941 -13.29736 -13.16672 -12.89901 -12.81751 -12.65407 -12.52395 -12.36961 -12.27452 -12.09522 -12.05525 -11.97538 -11.80405 -11.69740 -11.47073 -11.45396 -11.02170 -10.84637 -10.75218 -10.59234 -9.86389 -9.36257 -8.29548 -5.97675 1.39026 1.41259 1.51112 2.16042 2.32470 3.06379 3.17277 3.79724 3.82712 3.89375 4.09938 4.19066 4.20910 4.32521 4.47310 4.50904 4.55530 4.61795 4.65389 4.69981 4.73608 4.76791 4.80231 4.84242 4.90804 4.95325 4.98809 5.05552 5.10371 5.19596 5.21689 5.25840 5.32046 5.33922 5.37984 5.39662 5.40641 5.46355 5.49108 5.58053 5.60873 5.66412 5.78890 5.84977 6.26660 6.62371 7.27818 7.59788 8.21451 8.72074 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.004374 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.431756 B = 6399.709435 C = 6704.177938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 N -0.460 5.460 4 C -0.338 4.338 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.890 5.890 8 Si 0.976 3.024 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.266 1.266 12 C 0.448 3.552 13 O -0.607 6.607 14 C -0.113 4.113 15 C -0.032 4.032 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.065 4.065 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.115 4.115 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.272 0.728 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 -3.311 15.844 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.029 4.029 3 N -0.180 5.180 4 C -0.466 4.466 5 H 0.080 0.920 6 C -0.200 4.200 7 N -0.528 5.528 8 Si 0.800 3.200 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.191 1.191 12 C 0.239 3.761 13 O -0.494 6.494 14 C -0.153 4.153 15 C -0.033 4.033 16 C -0.203 4.203 17 C -0.202 4.202 18 C -0.083 4.083 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.153 4.153 24 H 0.101 0.899 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.364 -2.932 15.718 16.865 hybrid contribution 0.311 0.319 -1.351 1.423 sum -5.053 -2.612 14.367 15.452 Atomic orbital electron populations 1.22094 0.95586 1.02285 1.01120 1.21627 0.93881 0.83923 1.03425 1.43841 1.56366 1.12938 1.04850 1.19327 1.41340 0.94699 0.91240 0.92033 1.25983 0.93797 0.96669 1.03522 1.69992 1.32829 1.16032 1.33997 0.85266 0.78843 0.77986 0.77891 1.20429 1.19729 1.19136 1.21231 0.81098 0.87601 0.86179 1.90360 1.51406 1.20414 1.87190 1.21716 1.02667 0.99204 0.91715 1.20185 0.95594 0.94356 0.93125 1.22022 0.98341 0.97740 1.02167 1.22051 0.95731 1.00640 1.01776 1.21083 0.99604 0.95063 0.92569 1.21709 0.99607 0.96632 0.97838 1.21514 1.01678 0.98001 0.94069 1.21534 0.99814 0.95988 0.98197 1.21528 0.99909 0.97091 0.96717 1.21675 1.01495 0.97956 0.94144 0.89886 0.92739 0.94289 0.89477 0.92015 0.91878 0.89684 0.89193 0.92004 0.93180 0.93259 0.93551 0.93525 0.92169 0.91013 0.92523 0.92425 0.91771 0.91658 0.91150 0.92558 0.91753 0.91464 0.91900 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 10.15 71.98 0.73 -4.64 16 2 C 0.09 4.13 5.44 86.38 0.47 4.60 16 3 N -0.46 -23.73 2.56 -635.54 -1.63 -25.36 16 4 C -0.34 -19.40 8.98 84.04 0.75 -18.64 16 5 H 0.06 3.79 7.70 -2.91 -0.02 3.77 16 6 C 0.00 0.12 4.92 84.93 0.42 0.53 16 7 N -0.89 -48.56 11.33 21.66 0.25 -48.31 16 8 Si 0.98 43.02 29.61 68.60 2.03 45.05 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 C 0.45 21.85 7.00 87.65 0.61 22.46 16 13 O -0.61 -33.44 11.17 -3.06 -0.03 -33.47 16 14 C -0.11 -4.10 3.02 29.85 0.09 -4.01 16 15 C -0.03 -1.02 0.32 -52.18 -0.02 -1.04 16 16 C -0.15 -4.85 7.83 71.98 0.56 -4.29 16 17 C -0.15 -5.08 7.47 71.98 0.54 -4.54 16 18 C -0.06 -1.56 1.55 -10.79 -0.02 -1.58 16 19 C -0.12 -2.76 4.50 30.59 0.14 -2.62 16 20 C -0.12 -2.09 5.92 30.59 0.18 -1.91 16 21 C -0.12 -1.95 5.92 30.59 0.18 -1.77 16 22 C -0.12 -1.96 5.93 30.61 0.18 -1.78 16 23 C -0.12 -2.46 4.50 30.61 0.14 -2.32 16 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.05 1.76 6.59 -2.39 -0.02 1.75 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 4.25 5.34 -2.39 -0.01 4.24 16 28 H 0.06 2.43 6.66 -2.39 -0.02 2.41 16 29 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.08 2.96 5.70 -2.38 -0.01 2.95 16 31 H 0.09 2.92 6.53 -2.39 -0.02 2.91 16 32 H 0.06 1.79 6.43 -2.39 -0.02 1.78 16 33 H 0.05 2.11 5.51 -2.39 -0.01 2.09 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.54 6.43 -2.38 -0.02 1.53 16 36 H 0.05 2.06 5.51 -2.39 -0.01 2.05 16 37 H 0.06 1.84 6.43 -2.39 -0.02 1.82 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.40 6.43 -2.38 -0.02 1.38 16 40 H 0.06 1.39 6.43 -2.38 -0.02 1.38 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.34 6.43 -2.38 -0.02 1.33 16 48 H 0.06 1.32 6.43 -2.39 -0.02 1.31 16 Total: -1.00 -64.38 343.70 6.51 -57.87 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.93 Total: 25.76 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 4.96 Total: -21.54 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.38 Total: -73.67 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.03 Total: -33.47 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -64.38 6.51 -57.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475169549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.658 kcal (2) G-P(sol) polarization free energy of solvation -64.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds