Wall clock time and date at job start Tue Mar 31 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58759 * 2 1 4 4 C 1.53146 * 109.53054 * 239.81743 * 2 1 3 5 5 C 1.53025 * 109.28603 * 182.53348 * 4 2 1 6 6 N 1.46847 * 109.57319 * 59.10209 * 5 4 2 7 7 C 1.46905 * 110.99842 * 174.17398 * 6 5 4 8 8 C 1.52996 * 109.46980 * 176.23173 * 7 6 5 9 9 O 1.42901 * 109.47058 * 62.32477 * 8 7 6 10 10 C 1.42901 * 113.99837 * 184.96735 * 9 8 7 11 11 C 1.50701 * 109.46959 * 184.97453 * 10 9 8 12 12 H 1.07992 * 120.00093 * 354.97484 * 11 10 9 13 13 C 1.37883 * 119.99676 * 174.97638 * 11 10 9 14 14 N 1.31517 * 119.99320 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00392 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47463 * 270.00462 * 15 13 11 17 17 H 1.48503 * 109.47133 * 150.00099 * 15 13 11 18 18 H 1.48501 * 109.47043 * 30.00219 * 15 13 11 19 19 C 1.46897 * 111.15187 * 298.23507 * 6 5 4 20 20 H 1.09003 * 109.48929 * 181.84429 * 19 6 5 21 21 C 1.53005 * 109.38713 * 301.89404 * 19 6 5 22 22 C 1.52994 * 109.51653 * 179.73195 * 21 19 6 23 23 C 1.53012 * 109.42150 * 299.86890 * 22 21 19 24 24 C 1.52995 * 109.42660 * 60.13468 * 23 22 21 25 25 C 1.52915 * 109.56713 * 300.05518 * 24 23 22 26 26 H 1.08998 * 109.45661 * 179.72454 * 25 24 23 27 27 H 1.08994 * 109.47373 * 180.18236 * 1 2 3 28 28 H 1.09008 * 109.47101 * 300.18276 * 1 2 3 29 29 H 1.08999 * 109.46878 * 60.17840 * 1 2 3 30 30 H 1.08999 * 109.49966 * 62.58722 * 4 2 1 31 31 H 1.08996 * 109.53331 * 302.49793 * 4 2 1 32 32 H 1.09004 * 109.45386 * 299.06857 * 5 4 2 33 33 H 1.08997 * 109.45595 * 179.13426 * 5 4 2 34 34 H 1.09004 * 109.46911 * 56.22989 * 7 6 5 35 35 H 1.09003 * 109.47321 * 296.23483 * 7 6 5 36 36 H 1.08995 * 109.47441 * 302.32110 * 8 7 6 37 37 H 1.09006 * 109.47044 * 182.32116 * 8 7 6 38 38 H 1.09005 * 109.47401 * 64.97390 * 10 9 8 39 39 H 1.08996 * 109.47016 * 304.97425 * 10 9 8 40 40 H 0.97002 * 119.99643 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.46783 * 59.71904 * 21 19 6 42 42 H 1.08997 * 109.45576 * 299.73589 * 21 19 6 43 43 H 1.09006 * 109.48102 * 179.88729 * 22 21 19 44 44 H 1.09001 * 109.49117 * 59.86106 * 22 21 19 45 45 H 1.08997 * 109.47885 * 300.14772 * 23 22 21 46 46 H 1.09004 * 109.47872 * 180.11842 * 23 22 21 47 47 H 1.09005 * 109.45243 * 180.02562 * 24 23 22 48 48 H 1.09002 * 109.44520 * 60.08284 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0420 -0.7256 -1.2477 5 6 3.5709 -0.7778 -1.2103 6 7 4.0097 -1.4805 0.0021 7 6 5.4664 -1.6704 0.0024 8 6 5.8958 -2.3195 1.3197 9 8 5.2927 -3.6100 1.4336 10 6 5.5394 -4.2586 2.6828 11 6 4.9649 -5.6514 2.6477 12 1 4.3918 -5.9777 1.7925 13 6 5.1711 -6.5090 3.7074 14 7 4.6702 -7.7247 3.6765 15 14 6.1630 -5.9449 5.1863 16 1 7.5973 -6.2637 4.9713 17 1 5.6777 -6.6435 6.4036 18 1 6.0025 -4.4788 5.3599 19 6 3.5708 -0.7735 1.2127 20 1 3.9380 -1.2992 2.0942 21 6 4.1267 0.6519 1.1982 22 6 3.6657 1.3931 2.4547 23 6 2.1368 1.4451 2.4826 24 6 1.5794 0.0204 2.4995 25 6 2.0418 -0.7253 1.2472 26 1 1.6478 -1.7415 1.2635 27 1 -0.3634 -1.0276 0.0033 28 1 -0.3634 0.5167 0.8884 29 1 -0.3633 0.5111 -0.8916 30 1 1.7178 -0.1891 -2.1394 31 1 1.6437 -1.7400 -1.2685 32 1 3.9687 0.2370 -1.2059 33 1 3.9377 -1.3073 -2.0896 34 1 5.9588 -0.7037 -0.1038 35 1 5.7489 -2.3154 -0.8296 36 1 5.5769 -1.6945 2.1537 37 1 6.9808 -2.4228 1.3371 38 1 5.0686 -3.6915 3.4859 39 1 6.6138 -4.3130 2.8579 40 1 4.8149 -8.3279 4.4222 41 1 3.7626 1.1749 0.3139 42 1 5.2159 0.6165 1.1765 43 1 4.0638 2.4079 2.4447 44 1 4.0278 0.8693 3.3394 45 1 1.7746 1.9666 1.5966 46 1 1.8073 1.9749 3.3764 47 1 0.4901 0.0570 2.5189 48 1 1.9409 -0.5002 3.3864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516096701.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:15 Heat of formation + Delta-G solvation = -61.723490 kcal Electronic energy + Delta-G solvation = -24089.692217 eV Core-core repulsion = 20950.607481 eV Total energy + Delta-G solvation = -3139.084735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73767 -37.14645 -35.66781 -34.62060 -32.58012 -30.69814 -29.78221 -29.41773 -27.86994 -26.37209 -23.70077 -22.85638 -22.07587 -21.75875 -21.39260 -20.01071 -17.82067 -16.82032 -16.12578 -16.08035 -15.47665 -15.25267 -14.72556 -14.43689 -14.20315 -14.08830 -13.47572 -13.35847 -13.04143 -12.94911 -12.57067 -12.46840 -12.40225 -12.25027 -11.99040 -11.76739 -11.59677 -11.43475 -11.19857 -11.07049 -10.91291 -10.87131 -10.63633 -10.46262 -10.32310 -10.04220 -9.84139 -9.81576 -9.65929 -9.11881 -8.76416 -8.38483 -7.89586 -6.06813 -4.04813 3.26744 3.33742 3.35485 4.03930 4.39220 4.57275 4.66142 4.73529 4.82356 4.89679 5.05942 5.09771 5.21912 5.24865 5.29718 5.32099 5.45175 5.46797 5.53541 5.56760 5.57824 5.66600 5.68258 5.74054 5.78407 5.84440 5.88858 5.92121 5.93728 6.00558 6.05809 6.08633 6.14090 6.18801 6.21335 6.28382 6.34465 6.41259 6.51070 6.64767 6.65682 7.05524 7.36921 7.40197 7.65815 8.11210 8.74262 9.07214 9.53301 11.06455 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018859 B = 0.004663 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.346821 B = 6003.214524 C = 6148.899504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.111 4.111 5 C 0.053 3.947 6 N -0.515 5.515 7 C 0.061 3.939 8 C 0.057 3.943 9 O -0.362 6.362 10 C 0.169 3.831 11 C -0.514 4.514 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.088 3.912 20 H 0.091 0.909 21 C -0.155 4.155 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.072 4.072 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.039 0.961 38 H -0.001 1.001 39 H -0.005 1.005 40 H 0.265 0.735 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 21.309 -6.201 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.075 4.075 6 N -0.238 5.238 7 C -0.067 4.067 8 C -0.021 4.021 9 O -0.281 6.281 10 C 0.094 3.906 11 C -0.552 4.552 12 H 0.101 0.899 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.021 4.021 20 H 0.109 0.891 21 C -0.194 4.194 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.090 4.090 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.016 0.984 39 H 0.012 0.988 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.553 20.551 -6.259 21.960 hybrid contribution 1.207 1.069 1.088 1.945 sum -3.345 21.620 -5.171 22.480 Atomic orbital electron populations 1.21863 0.95494 1.01963 1.01122 1.21259 0.95283 0.99263 0.94902 0.91305 1.21630 0.94796 1.01450 0.96994 1.22085 0.95857 0.96260 0.93325 1.62050 1.12124 1.48357 1.01288 1.22111 0.87656 0.98055 0.98852 1.22426 0.95940 0.87712 0.96018 1.88035 1.74083 1.27820 1.38140 1.20558 0.94236 0.93723 0.82124 1.20899 1.33866 0.94562 1.05830 0.89892 1.24768 0.95634 0.94621 0.97952 1.69882 1.45446 1.06158 1.32032 0.86869 0.80828 0.79298 0.82839 1.20017 1.20838 1.19248 1.21779 0.94944 0.91134 0.94197 0.89107 1.22269 1.00393 0.98140 0.98603 1.21449 0.95926 0.99685 0.98153 1.21559 0.95486 0.97238 1.01349 1.21582 1.00352 0.95397 0.98109 1.21106 0.94289 0.99970 0.93681 0.89970 0.92497 0.92616 0.93230 0.92123 0.90867 0.95178 0.91125 0.94387 0.90071 0.94284 0.94267 0.98369 0.98760 0.92462 0.91551 0.92351 0.92554 0.91974 0.91986 0.92435 0.91649 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.89 37.16 0.33 -1.08 16 2 C -0.09 -0.95 1.71 -90.50 -0.15 -1.11 16 3 H 0.07 0.72 4.85 -51.93 -0.25 0.46 16 4 C -0.11 -1.25 5.38 -26.64 -0.14 -1.39 16 5 C 0.05 0.64 5.16 -3.84 -0.02 0.62 16 6 N -0.52 -7.74 4.62 -226.66 -1.05 -8.78 16 7 C 0.06 0.91 5.04 -3.82 -0.02 0.89 16 8 C 0.06 1.02 5.57 37.16 0.21 1.23 16 9 O -0.36 -8.62 10.23 -35.23 -0.36 -8.98 16 10 C 0.17 4.38 4.76 36.01 0.17 4.56 16 11 C -0.51 -15.56 9.99 -34.44 -0.34 -15.90 16 12 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 13 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 15 Si 0.87 21.74 27.37 -169.99 -4.65 17.09 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.39 6.69 56.52 0.38 -6.01 16 19 C 0.09 1.23 1.80 -67.70 -0.12 1.11 16 20 H 0.09 1.52 5.79 -51.93 -0.30 1.22 16 21 C -0.16 -1.78 4.24 -26.73 -0.11 -1.89 16 22 C -0.11 -1.18 5.92 -26.73 -0.16 -1.34 16 23 C -0.12 -1.16 5.65 -26.73 -0.15 -1.31 16 24 C -0.12 -1.31 5.15 -26.78 -0.14 -1.45 16 25 C -0.07 -0.92 2.10 -90.61 -0.19 -1.11 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.50 6.51 -51.92 -0.34 0.16 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.34 6.17 -51.93 -0.32 0.02 16 33 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 34 H 0.04 0.48 6.86 -51.93 -0.36 0.12 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.67 6.04 -51.93 -0.31 0.36 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.00 -0.03 7.55 -51.93 -0.39 -0.43 16 39 H -0.01 -0.13 7.29 -51.93 -0.38 -0.51 16 40 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.07 0.73 4.78 -51.93 -0.25 0.48 16 42 H 0.06 0.68 6.73 -51.93 -0.35 0.33 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.58 6.41 -51.93 -0.33 0.25 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.67 6.49 -51.93 -0.34 0.33 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -31.54 343.45 -9.63 -41.16 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.57 Total: -2.26 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.94 Total: -16.14 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.27 Total: -36.05 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.36 Total: -8.98 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.65 Total: 17.09 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.54 -9.63 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516096701.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.560 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds