Wall clock time and date at job start Tue Mar 31 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.60136 * 2 1 4 4 C 1.53143 * 109.53370 * 239.80728 * 2 1 3 5 5 C 1.53025 * 109.32676 * 182.52507 * 4 2 1 6 6 N 1.46864 * 109.58687 * 59.05739 * 5 4 2 7 7 C 1.46902 * 110.99995 * 174.28478 * 6 5 4 8 8 C 1.52998 * 109.47356 * 283.29500 * 7 6 5 9 9 O 1.42900 * 109.47238 * 66.91508 * 8 7 6 10 10 C 1.42901 * 114.00194 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47047 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99844 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99763 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99949 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47257 * 59.99828 * 15 13 11 17 17 H 1.48497 * 109.47263 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47095 * 299.99830 * 15 13 11 19 19 C 1.46802 * 111.13804 * 298.33718 * 6 5 4 20 20 H 1.08998 * 109.44160 * 301.87127 * 19 6 5 21 21 C 1.52937 * 109.70910 * 181.88550 * 19 6 5 22 22 C 1.53023 * 109.41836 * 179.71013 * 21 19 6 23 23 C 1.52985 * 109.52951 * 59.93500 * 22 21 19 24 24 C 1.53023 * 109.52805 * 300.16611 * 23 22 21 25 25 C 1.52969 * 109.39487 * 59.93915 * 24 23 22 26 26 H 1.09003 * 109.50275 * 59.92186 * 25 24 23 27 27 H 1.09001 * 109.46702 * 299.81124 * 1 2 3 28 28 H 1.09000 * 109.46802 * 59.80402 * 1 2 3 29 29 H 1.08995 * 109.47275 * 179.81032 * 1 2 3 30 30 H 1.09002 * 109.49441 * 302.47676 * 4 2 1 31 31 H 1.08998 * 109.49388 * 62.56120 * 4 2 1 32 32 H 1.09000 * 109.45097 * 179.09855 * 5 4 2 33 33 H 1.09004 * 109.44771 * 299.02141 * 5 4 2 34 34 H 1.09007 * 109.47197 * 43.29413 * 7 6 5 35 35 H 1.08998 * 109.47334 * 163.29216 * 7 6 5 36 36 H 1.09004 * 109.47217 * 186.91309 * 8 7 6 37 37 H 1.08999 * 109.47466 * 306.91830 * 8 7 6 38 38 H 1.09001 * 109.47217 * 300.00226 * 10 9 8 39 39 H 1.08994 * 109.46971 * 60.00375 * 10 9 8 40 40 H 0.97006 * 120.00022 * 179.97438 * 14 13 11 41 41 H 1.09004 * 109.46359 * 59.73533 * 21 19 6 42 42 H 1.09002 * 109.49320 * 299.70297 * 21 19 6 43 43 H 1.09000 * 109.46176 * 299.91987 * 22 21 19 44 44 H 1.09004 * 109.46132 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.46035 * 60.18154 * 23 22 21 46 46 H 1.09000 * 109.46082 * 180.16172 * 23 22 21 47 47 H 1.09003 * 109.48005 * 179.91173 * 24 23 22 48 48 H 1.08993 * 109.48475 * 299.94175 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0421 -0.7258 -1.2475 5 6 3.5710 -0.7783 -1.2111 6 7 4.0109 -1.4799 0.0018 7 6 5.4678 -1.6677 0.0023 8 6 5.8351 -2.8109 -0.9459 9 8 5.5430 -2.4267 -2.2909 10 6 5.8514 -3.4290 -3.2617 11 6 5.5060 -2.9192 -4.6372 12 1 5.0919 -1.9290 -4.7579 13 6 5.7176 -3.7172 -5.7414 14 7 6.2214 -4.9231 -5.5944 15 14 5.2887 -3.0856 -7.4463 16 1 6.0770 -1.8601 -7.7330 17 1 5.6094 -4.1271 -8.4551 18 1 3.8394 -2.7673 -7.5062 19 6 3.5711 -0.7732 1.2111 20 1 3.9657 0.2428 1.2012 21 6 4.0855 -1.5047 2.4517 22 6 3.6296 -0.7588 3.7077 23 6 2.1012 -0.7041 3.7435 24 6 1.5861 0.0242 2.5001 25 6 2.0418 -0.7256 1.2470 26 1 1.6451 -1.7406 1.2659 27 1 -0.3633 0.5109 0.8917 28 1 -0.3633 0.5169 -0.8882 29 1 -0.3633 -1.0276 -0.0034 30 1 1.6437 -1.7403 -1.2673 31 1 1.7175 -0.1897 -2.1392 32 1 3.9370 -1.3086 -2.0903 33 1 3.9690 0.2365 -1.2080 34 1 5.9526 -0.7498 -0.3305 35 1 5.8026 -1.9103 1.0108 36 1 6.8985 -3.0318 -0.8539 37 1 5.2561 -3.6975 -0.6875 38 1 6.9153 -3.6623 -3.2177 39 1 5.2731 -4.3286 -3.0515 40 1 6.3699 -5.4847 -6.3713 41 1 5.1746 -1.5417 2.4261 42 1 3.6874 -2.5194 2.4669 43 1 4.0290 0.2553 3.6929 44 1 3.9955 -1.2799 4.5924 45 1 1.7018 -1.7181 3.7618 46 1 1.7777 -0.1701 4.6370 47 1 0.4970 0.0613 2.5256 48 1 1.9842 1.0387 2.4820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516096704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:22 Heat of formation + Delta-G solvation = -74.746915 kcal Electronic energy + Delta-G solvation = -23572.572092 eV Core-core repulsion = 20432.922619 eV Total energy + Delta-G solvation = -3139.649474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19531 -37.04753 -35.71265 -34.92122 -32.66721 -30.18943 -30.02139 -29.50694 -27.29544 -26.13298 -23.31285 -22.80154 -22.30469 -21.96539 -20.15544 -19.84428 -19.51047 -16.41197 -16.19855 -15.53276 -15.21047 -14.96449 -14.70895 -14.35700 -14.20097 -13.93858 -13.60132 -13.50229 -13.27816 -12.95089 -12.86967 -12.43776 -11.87224 -11.74991 -11.67446 -11.48265 -11.33190 -11.15054 -11.09283 -11.01779 -10.90484 -10.76526 -10.68466 -10.60203 -10.48312 -10.36315 -10.04847 -9.63578 -9.55547 -9.04481 -8.73349 -8.10279 -7.90903 -6.07918 -4.09544 3.33434 3.36268 3.39864 4.08907 4.36968 4.57807 4.59577 4.78611 4.92908 4.97890 5.12791 5.15244 5.24323 5.28530 5.31643 5.37936 5.42055 5.47492 5.58326 5.65922 5.67653 5.73739 5.77385 5.83249 5.88294 5.94904 5.99144 6.00864 6.06250 6.08926 6.11808 6.17591 6.19277 6.27341 6.31390 6.36174 6.44105 6.47106 6.68600 6.90525 7.18347 7.46669 7.51281 7.56945 7.81641 8.19807 8.63236 9.03927 9.55208 11.03567 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.003989 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.700616 B = 7016.855768 C = 7920.467220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.061 0.939 4 C -0.110 4.110 5 C 0.047 3.953 6 N -0.526 5.526 7 C 0.053 3.947 8 C 0.069 3.931 9 O -0.392 6.392 10 C 0.195 3.805 11 C -0.513 4.513 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.906 3.094 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.090 3.910 20 H 0.032 0.968 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.070 4.070 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.020 0.980 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.002 0.998 39 H 0.005 0.995 40 H 0.264 0.736 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 9.216 17.990 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.080 4.080 6 N -0.251 5.251 7 C -0.075 4.075 8 C -0.009 4.009 9 O -0.313 6.313 10 C 0.121 3.879 11 C -0.552 4.552 12 H 0.083 0.917 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.733 3.267 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.018 4.018 20 H 0.050 0.950 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.089 4.089 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.023 0.977 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.488 8.766 17.814 21.593 hybrid contribution 0.398 0.734 -0.885 1.217 sum -8.090 9.500 16.929 21.031 Atomic orbital electron populations 1.21852 0.95505 1.01761 1.01167 1.21235 0.95273 0.99027 0.95287 0.92010 1.21646 0.95718 1.00952 0.96489 1.22448 0.94552 0.96363 0.94600 1.61903 1.11992 1.49626 1.01564 1.22284 0.87949 0.98310 0.98942 1.22263 0.97544 0.96311 0.84811 1.87766 1.85794 1.43797 1.13905 1.20163 0.94588 0.86836 0.86289 1.21014 1.42330 1.01809 0.90006 0.91730 1.24933 0.95220 0.94786 0.99494 1.69956 1.44540 1.08601 1.30686 0.86432 0.79032 0.78384 0.82829 1.20090 1.21196 1.20006 1.21565 0.94960 0.95100 0.90210 0.94980 1.21727 1.00416 1.00070 0.93342 1.21518 0.95870 1.00442 0.97663 1.21536 0.95715 1.00794 0.97599 1.21635 1.00442 0.99011 0.94153 1.21172 0.94273 0.99929 0.93529 0.90423 0.92891 0.92937 0.92658 0.91180 0.91838 0.86312 0.96151 0.94412 0.89934 0.94489 0.93681 0.97971 0.97709 0.92655 0.91692 0.91012 0.92334 0.92074 0.91928 0.92397 0.91697 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.91 37.16 0.33 -1.15 16 2 C -0.09 -1.06 2.29 -90.50 -0.21 -1.27 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.59 5.38 -26.64 -0.14 -1.73 16 5 C 0.05 0.80 5.20 -3.83 -0.02 0.78 16 6 N -0.53 -8.19 4.42 -226.75 -1.00 -9.19 16 7 C 0.05 0.83 5.38 -3.82 -0.02 0.81 16 8 C 0.07 1.31 6.25 37.16 0.23 1.54 16 9 O -0.39 -9.33 7.48 -35.23 -0.26 -9.59 16 10 C 0.20 5.38 5.69 36.01 0.20 5.58 16 11 C -0.51 -15.07 9.43 -34.44 -0.32 -15.40 16 12 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 15 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.09 1.14 1.69 -67.77 -0.11 1.03 16 20 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 21 C -0.12 -1.29 4.90 -26.75 -0.13 -1.42 16 22 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 23 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 24 C -0.11 -1.07 4.92 -26.74 -0.13 -1.20 16 25 C -0.07 -0.81 1.64 -90.57 -0.15 -0.96 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.47 6.51 -51.93 -0.34 0.13 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.12 2.46 5.27 -51.93 -0.27 2.18 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.04 0.62 7.99 -51.92 -0.41 0.20 16 35 H 0.08 1.09 5.24 -51.93 -0.27 0.81 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.06 0.70 5.92 -51.93 -0.31 0.39 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -29.95 355.15 -10.19 -40.13 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -9.10 Total: -3.04 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.89 Total: -14.23 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.27 Total: -35.53 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.26 Total: -9.59 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.95 -10.19 -40.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516096704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.615 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds