Wall clock time and date at job start Tue Mar 31 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.53005 * 2 1 4 4 C 1.53123 * 109.52908 * 239.85250 * 2 1 3 5 5 C 1.53032 * 109.29928 * 182.34758 * 4 2 1 6 6 N 1.46857 * 109.55161 * 59.10832 * 5 4 2 7 7 C 1.46905 * 110.99610 * 174.25658 * 6 5 4 8 8 C 1.52997 * 109.47150 * 66.04917 * 7 6 5 9 9 O 1.42898 * 109.47319 * 64.99949 * 8 7 6 10 10 C 1.42902 * 114.00186 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47205 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00105 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00129 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99722 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00218 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47224 * 59.99769 * 15 13 11 17 17 H 1.48500 * 109.47098 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47074 * 299.99700 * 15 13 11 19 19 C 1.46830 * 111.18110 * 298.33728 * 6 5 4 20 20 H 1.08997 * 109.43838 * 301.84150 * 19 6 5 21 21 C 1.52964 * 109.34484 * 181.81761 * 19 6 5 22 22 C 1.52998 * 109.71926 * 299.54100 * 21 19 6 23 23 C 1.53007 * 109.44637 * 300.14592 * 22 21 19 24 24 C 1.52989 * 109.46960 * 60.03148 * 23 22 21 25 25 C 1.53013 * 109.49758 * 299.95964 * 24 23 22 26 26 H 1.08999 * 109.54655 * 299.54696 * 25 24 23 27 27 H 1.09001 * 109.46864 * 180.15123 * 1 2 3 28 28 H 1.09001 * 109.47331 * 300.14393 * 1 2 3 29 29 H 1.08996 * 109.47087 * 60.14471 * 1 2 3 30 30 H 1.09004 * 109.50064 * 62.40382 * 4 2 1 31 31 H 1.08998 * 109.50205 * 302.29939 * 4 2 1 32 32 H 1.08999 * 109.45844 * 299.08364 * 5 4 2 33 33 H 1.08998 * 109.45563 * 179.13304 * 5 4 2 34 34 H 1.09001 * 109.47063 * 306.04314 * 7 6 5 35 35 H 1.09004 * 109.46681 * 186.04939 * 7 6 5 36 36 H 1.09002 * 109.47153 * 304.99641 * 8 7 6 37 37 H 1.09001 * 109.46832 * 184.99832 * 8 7 6 38 38 H 1.09001 * 109.46918 * 299.99649 * 10 9 8 39 39 H 1.08999 * 109.46857 * 59.99535 * 10 9 8 40 40 H 0.96998 * 119.99585 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.24807 * 179.53440 * 21 19 6 42 42 H 1.09001 * 109.46453 * 59.68491 * 21 19 6 43 43 H 1.08999 * 109.47803 * 180.15063 * 22 21 19 44 44 H 1.09001 * 109.47606 * 60.13834 * 22 21 19 45 45 H 1.08997 * 109.46981 * 300.03355 * 23 22 21 46 46 H 1.08996 * 109.47209 * 180.02562 * 23 22 21 47 47 H 1.08992 * 109.46747 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.46302 * 59.96609 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0419 -0.7248 -1.2479 5 6 3.5710 -0.7731 -1.2133 6 7 4.0132 -1.4743 -0.0011 7 6 5.4706 -1.6591 -0.0019 8 6 6.1576 -0.2955 0.0954 9 8 5.8531 0.3024 1.3570 10 6 6.4489 1.5868 1.5505 11 6 6.0626 2.1207 2.9057 12 1 5.4255 1.5377 3.5543 13 6 6.5217 3.3539 3.3173 14 7 7.2971 4.0641 2.5273 15 14 6.0423 4.0161 4.9970 16 1 6.5203 3.0854 6.0508 17 1 6.6616 5.3508 5.1980 18 1 4.5646 4.1383 5.0775 19 6 3.5728 -0.7701 1.2097 20 1 3.9654 0.2467 1.2010 21 6 4.0931 -1.5096 2.4435 22 6 3.5361 -2.9344 2.4645 23 6 2.0075 -2.8832 2.5073 24 6 1.4870 -2.1506 1.2691 25 6 2.0435 -0.7255 1.2473 26 1 1.7162 -0.1924 2.1399 27 1 -0.3633 -1.0277 0.0027 28 1 -0.3634 0.5161 0.8887 29 1 -0.3633 0.5116 -0.8912 30 1 1.7149 -0.1895 -2.1394 31 1 1.6461 -1.7402 -1.2670 32 1 3.9664 0.2427 -1.2098 33 1 3.9376 -1.3021 -2.0929 34 1 5.7736 -2.1537 -0.9248 35 1 5.7594 -2.2732 0.8511 36 1 5.8008 0.3492 -0.7079 37 1 7.2362 -0.4249 0.0055 38 1 7.5335 1.4969 1.4906 39 1 6.0977 2.2703 0.7774 40 1 7.6204 4.9315 2.8170 41 1 3.7723 -0.9809 3.3411 42 1 5.1821 -1.5457 2.4130 43 1 3.9071 -3.4567 3.3463 44 1 3.8570 -3.4633 1.5670 45 1 1.6867 -2.3536 3.4043 46 1 1.6102 -3.8980 2.5227 47 1 0.3981 -2.1145 1.2994 48 1 1.8084 -2.6799 0.3721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516096705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:25 Heat of formation + Delta-G solvation = -66.316576 kcal Electronic energy + Delta-G solvation = -24692.678593 eV Core-core repulsion = 21553.394686 eV Total energy + Delta-G solvation = -3139.283907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32760 -37.03967 -35.22130 -34.71657 -32.66450 -29.97515 -29.73207 -29.08454 -27.34348 -26.02439 -23.19237 -22.88080 -22.52411 -21.97625 -20.79426 -19.42259 -17.78261 -16.43470 -15.95669 -15.78282 -15.46464 -14.87145 -14.57671 -14.22275 -14.11511 -13.73463 -13.41993 -13.19564 -12.98029 -12.67403 -12.37336 -12.04599 -11.97445 -11.79916 -11.69463 -11.44779 -11.23403 -11.13468 -10.89976 -10.83295 -10.77664 -10.73455 -10.45312 -10.35218 -10.27406 -10.10458 -9.80926 -9.53022 -9.31869 -9.12608 -8.76571 -8.19437 -7.58221 -6.12730 -4.14506 3.30020 3.33201 3.36600 4.27273 4.36017 4.86056 4.93525 4.99356 5.02315 5.23954 5.28843 5.31129 5.43950 5.53593 5.58663 5.64844 5.71624 5.73085 5.81713 5.85066 5.91120 5.94455 6.02159 6.04376 6.05907 6.09229 6.13201 6.17889 6.18586 6.29112 6.30694 6.36820 6.43964 6.47766 6.60013 6.71100 6.75793 6.87465 6.96345 6.99782 7.10668 7.40087 7.58273 7.64133 7.76792 8.13176 8.53327 8.98323 9.50514 10.98744 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.005557 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.132415 B = 5037.435650 C = 5237.432077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.107 4.107 5 C 0.051 3.949 6 N -0.523 5.523 7 C 0.055 3.945 8 C 0.023 3.977 9 O -0.379 6.379 10 C 0.193 3.807 11 C -0.511 4.511 12 H 0.066 0.934 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.087 3.913 20 H 0.087 0.913 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.105 4.105 25 C -0.075 4.075 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.048 0.952 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 -12.177 -6.168 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.145 4.145 5 C -0.077 4.077 6 N -0.247 5.247 7 C -0.073 4.073 8 C -0.056 4.056 9 O -0.299 6.299 10 C 0.118 3.882 11 C -0.550 4.550 12 H 0.084 0.916 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.020 4.020 20 H 0.105 0.895 21 C -0.139 4.139 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.094 4.094 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.018 0.982 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.538 -12.550 -6.031 17.462 hybrid contribution 0.517 1.585 0.583 1.767 sum -10.021 -10.964 -5.448 15.822 Atomic orbital electron populations 1.21853 0.95732 1.01531 1.01116 1.21206 0.95035 0.99459 0.95296 0.91479 1.21623 0.94995 1.00801 0.97081 1.22067 0.95453 0.97189 0.93036 1.62171 1.10910 1.49561 1.02072 1.22313 0.87384 0.95443 1.02172 1.23007 0.98420 0.95383 0.88804 1.88008 1.72869 1.36090 1.32953 1.20171 0.92410 0.78827 0.96769 1.20981 1.30919 1.02399 1.00655 0.91607 1.24936 0.95050 0.96480 0.97948 1.69955 1.34194 1.12904 1.36745 0.86448 0.78847 0.77933 0.83579 1.20010 1.21192 1.20019 1.21847 0.92695 0.98736 0.88755 0.89541 1.21492 1.01413 0.94204 0.96816 1.21485 0.94883 0.97851 1.00863 1.21474 0.96489 0.99116 0.98092 1.21542 0.98241 0.95743 0.98695 1.21249 0.95483 0.95720 0.96914 0.91525 0.92518 0.92955 0.93307 0.92408 0.91281 0.94696 0.91630 0.90725 0.89768 0.94668 0.94498 0.98001 0.98152 0.92648 0.92477 0.90466 0.93613 0.91449 0.92976 0.93245 0.93322 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.80 37.16 0.33 -1.29 16 2 C -0.09 -1.21 2.56 -90.47 -0.23 -1.44 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.11 -1.31 5.02 -26.65 -0.13 -1.44 16 5 C 0.05 0.69 5.06 -3.83 -0.02 0.67 16 6 N -0.52 -7.60 3.25 -226.71 -0.74 -8.34 16 7 C 0.06 0.81 5.45 -3.82 -0.02 0.79 16 8 C 0.02 0.41 5.75 37.16 0.21 0.63 16 9 O -0.38 -8.43 5.16 -35.23 -0.18 -8.62 16 10 C 0.19 5.13 5.69 36.00 0.20 5.34 16 11 C -0.51 -14.63 9.43 -34.44 -0.32 -14.96 16 12 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 15 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.09 1.42 1.36 -67.75 -0.09 1.33 16 20 H 0.09 1.79 5.59 -51.93 -0.29 1.50 16 21 C -0.10 -1.68 4.33 -26.75 -0.12 -1.79 16 22 C -0.11 -1.56 5.69 -26.73 -0.15 -1.71 16 23 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 24 C -0.10 -1.32 4.33 -26.73 -0.12 -1.44 16 25 C -0.07 -1.07 2.06 -90.51 -0.19 -1.26 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.81 6.55 -51.93 -0.34 0.47 16 32 H 0.03 0.55 6.64 -51.93 -0.34 0.20 16 33 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 34 H 0.07 0.93 8.06 -51.93 -0.42 0.52 16 35 H 0.08 1.27 6.08 -51.93 -0.32 0.95 16 36 H 0.04 0.64 6.46 -51.93 -0.34 0.31 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.41 5.15 -51.93 -0.27 1.14 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.93 7.41 -51.93 -0.39 0.55 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.56 6.40 -51.93 -0.33 0.23 16 48 H 0.07 0.96 5.97 -51.93 -0.31 0.65 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -28.70 342.07 -9.66 -38.36 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.71 Total: -0.60 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -0.90 Total: -16.64 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.00 Total: -34.39 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.18 Total: -8.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.70 -9.66 -38.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516096705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.955 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds