Wall clock time and date at job start Tue Mar 31 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.52996 * 109.47276 * 294.99872 * 4 2 1 6 6 H 1.09001 * 109.47166 * 55.00144 * 5 4 2 7 7 C 1.52996 * 109.47228 * 295.00107 * 5 4 2 8 8 C 1.53004 * 109.47021 * 174.99763 * 5 4 2 9 9 C 1.50700 * 109.46712 * 184.99800 * 8 5 4 10 10 O 1.21280 * 120.00653 * 0.02562 * 9 8 5 11 11 N 1.34784 * 119.99600 * 180.02562 * 9 8 5 12 12 C 1.46928 * 120.63159 * 359.71960 * 11 9 8 13 13 C 1.52761 * 109.00961 * 233.58705 * 12 11 9 14 14 C 1.53045 * 109.38205 * 305.59112 * 13 12 11 15 15 C 1.50702 * 109.44951 * 181.25523 * 14 13 12 16 16 H 1.07997 * 119.99487 * 239.93556 * 15 14 13 17 17 C 1.37872 * 120.00221 * 59.93246 * 15 14 13 18 18 N 1.31515 * 119.99787 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48512 * 109.46898 * 90.00167 * 19 17 15 21 21 H 1.48501 * 109.47393 * 209.99839 * 19 17 15 22 22 H 1.48503 * 109.47438 * 330.00517 * 19 17 15 23 23 C 1.53041 * 109.53874 * 61.23801 * 14 13 12 24 24 C 1.46931 * 120.62908 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 29 29 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 33 33 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 34 34 H 1.09000 * 109.47377 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.47077 * 300.00091 * 7 5 4 36 36 H 1.09000 * 109.47129 * 60.00044 * 7 5 4 37 37 H 1.08999 * 109.47433 * 305.00020 * 8 5 4 38 38 H 1.09001 * 109.46702 * 65.00628 * 8 5 4 39 39 H 1.08997 * 109.58089 * 353.41963 * 12 11 9 40 40 H 1.08998 * 109.58473 * 113.84354 * 12 11 9 41 41 H 1.08992 * 109.56862 * 185.55414 * 13 12 11 42 42 H 1.09007 * 109.38520 * 65.51122 * 13 12 11 43 43 H 1.08998 * 109.45788 * 301.21928 * 14 13 12 44 44 H 0.97005 * 119.99967 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.49426 * 178.68549 * 23 14 13 46 46 H 1.08997 * 109.52647 * 58.60579 * 23 14 13 47 47 H 1.08998 * 109.58586 * 246.15475 * 24 11 9 48 48 H 1.09000 * 109.58593 * 6.43678 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6354 -2.1954 -1.1880 6 1 0.5564 -2.2707 -1.0528 7 6 2.3450 -2.8707 -0.0127 8 6 2.0355 -2.8887 -2.4920 9 6 1.5286 -4.3079 -2.4823 10 8 0.9081 -4.7238 -1.5268 11 7 1.7650 -5.1150 -3.5355 12 6 2.5099 -4.6238 -4.7028 13 6 1.6840 -4.8769 -5.9627 14 6 1.3081 -6.3587 -6.0344 15 6 0.5194 -6.6160 -7.2926 16 1 -0.4857 -7.0061 -7.2295 17 6 1.0809 -6.3533 -8.5241 18 7 2.3050 -5.8786 -8.6008 19 14 0.1036 -6.6729 -10.0835 20 1 -0.6596 -5.4522 -10.4483 21 1 1.0332 -7.0236 -11.1872 22 1 -0.8399 -7.7966 -9.8550 23 6 0.4603 -6.7313 -4.8160 24 6 1.2768 -6.5008 -3.5410 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6055 -0.2617 -2.1370 33 1 3.1264 -0.6442 -1.2952 34 1 2.0570 -3.9211 0.0306 35 1 3.4239 -2.7954 -0.1480 36 1 2.0599 -2.3768 0.9162 37 1 1.6010 -2.3534 -3.3362 38 1 3.1216 -2.8914 -2.5835 39 1 2.6927 -3.5546 -4.5960 40 1 3.4597 -5.1531 -4.7793 41 1 2.2679 -4.6067 -6.8424 42 1 0.7772 -4.2728 -5.9283 43 1 2.2150 -6.9633 -6.0444 44 1 2.7000 -5.6934 -9.4673 45 1 0.1735 -7.7809 -4.8797 46 1 -0.4352 -6.1103 -4.7916 47 1 2.1238 -7.1867 -3.5207 48 1 0.6484 -6.6703 -2.6666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541050448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:06 Heat of formation + Delta-G solvation = -79.345998 kcal Electronic energy + Delta-G solvation = -23004.478961 eV Core-core repulsion = 19864.630056 eV Total energy + Delta-G solvation = -3139.848905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.86950 -37.79797 -36.64205 -33.54890 -33.49518 -31.32924 -30.12983 -27.95042 -27.29226 -26.64842 -25.92429 -23.03033 -22.35635 -21.24378 -19.73214 -19.38597 -18.13099 -16.91377 -16.17513 -15.79228 -15.21179 -15.18289 -14.58129 -14.29852 -13.95006 -13.78131 -13.23588 -13.11764 -12.91535 -12.82813 -12.62909 -12.38623 -12.36417 -11.89406 -11.76394 -11.66284 -11.41600 -11.30245 -11.25493 -10.99202 -10.93960 -10.66077 -10.60262 -10.42869 -10.35934 -10.31534 -10.09882 -9.63773 -9.25091 -9.17643 -8.90963 -8.39511 -7.96815 -6.04911 -4.10931 3.05120 3.26924 3.34101 3.37596 3.52733 4.39475 4.59672 4.72071 4.78014 4.95512 5.09189 5.17718 5.24711 5.41132 5.47559 5.52235 5.52827 5.59635 5.68435 5.71115 5.76800 5.81026 5.82597 5.86169 5.96414 6.00291 6.00978 6.08490 6.13595 6.15555 6.17124 6.28917 6.32121 6.45676 6.49813 6.56886 6.66399 6.90546 7.03840 7.15305 7.27005 7.65110 7.90429 7.97678 8.02846 8.38732 8.63411 8.92498 9.54244 11.00592 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.003419 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.803616 B = 8186.823033 C = 8685.023569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.111 4.111 5 C -0.076 4.076 6 H 0.080 0.920 7 C -0.152 4.152 8 C -0.136 4.136 9 C 0.511 3.489 10 O -0.558 6.558 11 N -0.602 5.602 12 C 0.103 3.897 13 C -0.125 4.125 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.038 0.962 43 H 0.027 0.973 44 H 0.260 0.740 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 10.627 13.701 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.149 4.149 5 C -0.095 4.095 6 H 0.098 0.902 7 C -0.209 4.209 8 C -0.176 4.176 9 C 0.299 3.701 10 O -0.438 6.438 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.163 4.163 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.818 10.447 14.046 17.599 hybrid contribution -0.407 -0.111 -1.170 1.244 sum 1.411 10.336 12.875 16.571 Atomic orbital electron populations 1.21907 0.95367 1.02161 1.01345 1.21152 0.95932 0.95773 0.98814 1.21848 1.00793 0.96282 1.01519 1.21723 1.00727 0.94721 0.97700 1.20935 1.01500 0.93365 0.93686 0.90205 1.21979 0.99187 1.02521 0.97221 1.21763 1.02484 0.93421 0.99921 1.20604 0.79651 0.87696 0.82100 1.90590 1.42186 1.76569 1.34419 1.48287 1.54641 1.12872 1.17621 1.21944 0.95381 0.98142 0.86404 1.21947 0.98725 1.00139 0.95535 1.18629 0.94969 0.92105 0.91265 1.21210 1.00512 1.42598 0.90640 0.92729 1.24957 0.94913 0.95118 0.98995 1.69836 1.13723 1.45005 1.24553 0.86616 0.79903 0.78594 0.83016 1.20736 1.21244 1.19968 1.21992 0.98781 1.00572 0.94776 1.21657 0.98241 0.81378 0.99804 0.92090 0.93140 0.92807 0.90956 0.93000 0.92862 0.92788 0.91940 0.92005 0.90685 0.93661 0.93056 0.89088 0.89334 0.91422 0.92057 0.87755 0.94323 0.95489 0.92987 0.92237 0.93034 0.92417 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.96 37.16 0.33 -1.05 16 2 C -0.10 -0.88 2.78 -90.62 -0.25 -1.13 16 3 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 4 C -0.11 -1.08 4.15 -26.73 -0.11 -1.19 16 5 C -0.08 -0.91 1.90 -90.62 -0.17 -1.08 16 6 H 0.08 1.07 6.16 -51.93 -0.32 0.75 16 7 C -0.15 -1.84 8.70 37.16 0.32 -1.52 16 8 C -0.14 -1.78 3.52 -27.88 -0.10 -1.88 16 9 C 0.51 8.69 7.41 -10.98 -0.08 8.60 16 10 O -0.56 -10.79 13.38 5.56 0.07 -10.72 16 11 N -0.60 -10.75 2.98 -173.05 -0.52 -11.26 16 12 C 0.10 1.82 6.31 -3.93 -0.02 1.79 16 13 C -0.12 -2.72 5.14 -26.83 -0.14 -2.86 16 14 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 15 C -0.51 -13.59 8.56 -34.44 -0.29 -13.88 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.27 11.31 55.43 0.63 -23.65 16 19 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.12 -2.53 5.30 -26.63 -0.14 -2.68 16 24 C 0.11 2.06 6.43 -3.73 -0.02 2.03 16 25 H 0.06 0.62 6.46 -51.93 -0.34 0.28 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.11 5.95 -51.93 -0.31 0.80 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.56 6.46 -51.93 -0.34 0.22 16 37 H 0.09 1.13 7.68 -51.93 -0.40 0.74 16 38 H 0.09 1.04 7.95 -51.93 -0.41 0.62 16 39 H 0.07 1.00 5.93 -51.93 -0.31 0.70 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 42 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -28.04 360.27 -8.92 -36.96 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.89 Total: 0.63 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -0.62 Total: -13.15 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.11 Total: -34.91 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.04 -8.92 -36.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.387 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds