Wall clock time and date at job start Tue Mar 31 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47030 * 2 1 4 4 N 1.46498 * 109.47139 * 120.00108 * 2 1 3 5 5 C 1.46497 * 120.00358 * 121.20866 * 4 2 1 6 6 C 1.50703 * 109.47093 * 264.09187 * 5 4 2 7 7 H 1.08000 * 119.99856 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99995 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99897 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00276 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46840 * 90.00244 * 10 8 6 12 12 H 1.48499 * 109.47195 * 210.00258 * 10 8 6 13 13 H 1.48502 * 109.47050 * 330.00396 * 10 8 6 14 14 C 1.34776 * 119.99785 * 301.20169 * 4 2 1 15 15 O 1.21278 * 120.00459 * 3.83455 * 14 4 2 16 16 C 1.50704 * 119.99981 * 183.82958 * 14 4 2 17 17 C 1.53000 * 109.47467 * 265.86802 * 16 14 4 18 18 C 1.52998 * 109.47586 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.46736 * 300.00386 * 18 17 16 20 20 C 1.52996 * 109.47238 * 180.02562 * 18 17 16 21 21 C 1.52999 * 109.46837 * 59.99691 * 18 17 16 22 22 C 1.53004 * 109.47417 * 299.99981 * 21 18 17 23 23 H 1.09003 * 109.46977 * 180.02562 * 22 21 18 24 24 C 1.52998 * 109.47229 * 300.00377 * 22 21 18 25 25 C 1.52998 * 109.46768 * 60.00357 * 22 21 18 26 26 H 1.08997 * 109.47340 * 305.04564 * 1 2 3 27 27 H 1.09000 * 109.47088 * 65.04748 * 1 2 3 28 28 H 1.09008 * 109.46943 * 185.04700 * 1 2 3 29 29 H 1.08998 * 109.47173 * 240.00002 * 2 1 3 30 30 H 1.09005 * 109.47058 * 178.49390 * 3 2 1 31 31 H 1.09004 * 109.47349 * 298.49058 * 3 2 1 32 32 H 1.09005 * 109.47431 * 58.49390 * 3 2 1 33 33 H 1.08999 * 109.47175 * 24.08781 * 5 4 2 34 34 H 1.08995 * 109.47639 * 144.08747 * 5 4 2 35 35 H 0.97001 * 119.99941 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46862 * 25.86386 * 16 14 4 37 37 H 1.09003 * 109.46498 * 300.00137 * 17 16 14 38 38 H 1.09003 * 109.47286 * 59.99677 * 17 16 14 39 39 H 1.09000 * 109.46879 * 299.99519 * 20 18 17 40 40 H 1.08993 * 109.46971 * 59.99836 * 20 18 17 41 41 H 1.09007 * 109.46815 * 180.02562 * 20 18 17 42 42 H 1.09007 * 109.47229 * 180.02562 * 21 18 17 43 43 H 1.09000 * 109.47492 * 60.00352 * 21 18 17 44 44 H 1.09001 * 109.47077 * 179.97438 * 24 22 21 45 45 H 1.08997 * 109.47291 * 299.99898 * 24 22 21 46 46 H 1.09003 * 109.46982 * 59.99657 * 24 22 21 47 47 H 1.09005 * 109.47409 * 179.97438 * 25 22 21 48 48 H 1.08997 * 109.47669 * 59.99783 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8822 -1.8661 1.0620 6 6 2.0453 -3.1167 1.1443 7 1 0.9768 -3.0432 1.2832 8 6 2.6438 -4.3546 1.0424 9 7 1.9133 -5.4459 1.1138 10 14 4.4918 -4.4817 0.8015 11 1 5.1605 -4.5432 2.1260 12 1 4.8070 -5.7110 0.0303 13 1 4.9769 -3.2920 0.0568 14 6 1.6728 -0.2445 2.4201 15 8 0.9023 0.6855 2.5314 16 6 2.2439 -0.9012 3.6504 17 6 1.2772 -1.9769 4.1497 18 6 1.8567 -2.6433 5.3991 19 1 2.8154 -3.1011 5.1552 20 6 0.8903 -3.7194 5.8979 21 6 2.0573 -1.5911 6.4916 22 6 3.0240 -0.5153 5.9924 23 1 3.1673 0.2340 6.7710 24 6 4.3696 -1.1581 5.6501 25 6 2.4445 0.1509 4.7430 26 1 -0.3634 0.5901 0.8413 27 1 -0.3633 0.4335 -0.9317 28 1 -0.3633 -1.0238 0.0904 29 1 1.8933 -0.5138 -0.8900 30 1 3.1296 1.4426 0.0270 31 1 1.6989 1.9485 -0.9032 32 1 1.6547 1.9641 0.8762 33 1 3.3931 -1.8336 0.0996 34 1 3.6195 -1.8687 1.8647 35 1 2.3343 -6.3169 1.0417 36 1 3.2023 -1.3592 3.4061 37 1 0.3187 -1.5189 4.3939 38 1 1.1339 -2.7263 3.3711 39 1 -0.0685 -3.2619 6.1417 40 1 0.7478 -4.4688 5.1194 41 1 1.3030 -4.1938 6.7884 42 1 2.4705 -2.0657 7.3817 43 1 1.0987 -1.1332 6.7355 44 1 5.0582 -0.3918 5.2940 45 1 4.7825 -1.6328 6.5402 46 1 4.2267 -1.9077 4.8717 47 1 3.1330 0.9177 4.3875 48 1 1.4859 0.6088 4.9868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542819662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:24 Heat of formation + Delta-G solvation = -70.322353 kcal Electronic energy + Delta-G solvation = -24718.824741 eV Core-core repulsion = 21579.367131 eV Total energy + Delta-G solvation = -3139.457610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03636 -38.17223 -35.36994 -33.29440 -32.77044 -31.98421 -30.52371 -27.51940 -26.64833 -26.53728 -25.99386 -23.55319 -22.37075 -21.20471 -20.59980 -18.31748 -17.81203 -16.99382 -16.14661 -15.54227 -14.83804 -14.64636 -14.32383 -13.89936 -13.85329 -13.57593 -13.21304 -12.98011 -12.78391 -12.58798 -12.49428 -12.24858 -11.99051 -11.80931 -11.67813 -11.52715 -11.38154 -11.12679 -10.97872 -10.86104 -10.76823 -10.74316 -10.61891 -10.51586 -10.26734 -10.17965 -10.01764 -9.77804 -9.57960 -9.37344 -8.70820 -8.56192 -7.67522 -6.20625 -4.20394 3.16413 3.24752 3.26748 3.45223 3.89086 4.26847 4.97903 5.01341 5.07746 5.10460 5.35456 5.47665 5.52426 5.62039 5.63300 5.69363 5.77010 5.81381 5.84834 5.92759 6.00245 6.05258 6.07007 6.10447 6.15079 6.19835 6.24582 6.28725 6.32418 6.39503 6.45903 6.49346 6.52135 6.59785 6.60493 6.63641 6.71832 6.73471 6.75045 6.90597 7.00132 7.15744 7.45317 7.50413 8.21939 8.45897 8.84644 9.06765 9.39481 10.91514 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.009315 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.965776 B = 3005.028856 C = 4387.246464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 C -0.164 4.164 4 N -0.589 5.589 5 C 0.207 3.793 6 C -0.532 4.532 7 H 0.081 0.919 8 C 0.079 3.921 9 N -0.889 5.889 10 Si 0.865 3.135 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.528 3.472 15 O -0.568 6.568 16 C -0.100 4.100 17 C -0.104 4.104 18 C -0.087 4.087 19 H 0.073 0.927 20 C -0.144 4.144 21 C -0.108 4.108 22 C -0.089 4.089 23 H 0.064 0.936 24 C -0.154 4.154 25 C -0.096 4.096 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.265 0.735 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 7.606 6.043 10.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.320 5.320 5 C 0.086 3.914 6 C -0.570 4.570 7 H 0.099 0.901 8 C -0.125 4.125 9 N -0.527 5.527 10 Si 0.692 3.308 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.317 3.683 15 O -0.448 6.448 16 C -0.121 4.121 17 C -0.142 4.142 18 C -0.106 4.106 19 H 0.091 0.909 20 C -0.202 4.202 21 C -0.146 4.146 22 C -0.107 4.107 23 H 0.083 0.917 24 C -0.211 4.211 25 C -0.134 4.134 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.632 7.866 6.057 10.271 hybrid contribution 1.089 -0.448 -0.298 1.214 sum 3.721 7.419 5.759 10.102 Atomic orbital electron populations 1.22170 0.95403 1.02775 1.01867 1.20841 0.94567 0.92131 0.88103 1.22184 1.00499 0.97061 1.02508 1.48063 1.49673 1.29621 1.04615 1.19862 0.90454 0.84011 0.97117 1.21340 0.96241 0.88479 1.50973 0.90146 1.24829 0.97571 0.95651 0.94433 1.69887 1.35575 0.97790 1.49404 0.87020 0.86566 0.78214 0.79023 1.19826 1.20998 1.19001 1.20457 0.80619 0.82554 0.84683 1.90510 1.36503 1.30830 1.87003 1.21270 1.01278 0.96842 0.92680 1.21597 0.96667 0.97748 0.98162 1.21090 0.99536 0.95185 0.94769 0.90875 1.21787 0.98834 0.98817 1.00741 1.21647 0.98922 0.96268 0.97744 1.21078 0.95251 0.97208 0.97167 0.91725 1.21978 0.96425 1.01015 1.01680 1.21422 1.01235 0.96714 0.94027 0.90594 0.93239 0.92266 0.90160 0.93311 0.92584 0.90961 0.95061 0.95402 0.92463 0.88916 0.92804 0.88030 0.93279 0.91909 0.93473 0.92610 0.92266 0.93134 0.93136 0.91511 0.92653 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.00 37.16 0.33 -2.63 16 2 C 0.15 2.69 3.27 -67.94 -0.22 2.47 16 3 C -0.16 -2.63 9.12 37.16 0.34 -2.29 16 4 N -0.59 -11.98 2.42 -167.48 -0.41 -12.38 16 5 C 0.21 4.50 4.01 -5.19 -0.02 4.48 16 6 C -0.53 -13.42 8.16 -34.44 -0.28 -13.70 16 7 H 0.08 2.28 7.59 -52.49 -0.40 1.89 16 8 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -24.98 13.96 55.43 0.77 -24.20 16 10 Si 0.87 19.45 27.47 -169.99 -4.67 14.78 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 14 C 0.53 10.69 6.04 -10.98 -0.07 10.62 16 15 O -0.57 -12.23 12.55 5.56 0.07 -12.16 16 16 C -0.10 -1.80 1.69 -91.77 -0.16 -1.96 16 17 C -0.10 -1.92 4.47 -26.73 -0.12 -2.04 16 18 C -0.09 -1.38 2.44 -90.62 -0.22 -1.60 16 19 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 20 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 21 C -0.11 -1.46 4.73 -26.73 -0.13 -1.59 16 22 C -0.09 -1.18 3.19 -90.62 -0.29 -1.47 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 C -0.15 -2.02 8.50 37.16 0.32 -1.70 16 25 C -0.10 -1.50 4.38 -26.73 -0.12 -1.62 16 26 H 0.08 1.48 6.13 -51.93 -0.32 1.16 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 29 H 0.08 1.43 7.73 -51.93 -0.40 1.03 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.27 6.43 -51.93 -0.33 0.94 16 33 H 0.03 0.68 6.86 -51.93 -0.36 0.32 16 34 H 0.03 0.59 5.36 -51.93 -0.28 0.32 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.09 1.72 4.12 -51.93 -0.21 1.51 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 2.23 5.76 -51.93 -0.30 1.93 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.99 4.81 -51.93 -0.25 0.74 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.07 1.15 7.85 -51.93 -0.41 0.75 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -27.24 352.22 -7.99 -35.22 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.68 Total: 6.35 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -0.39 Total: -12.91 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.37 Total: -36.59 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.67 Total: 14.78 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.24 -7.99 -35.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542819662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.099 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds