Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46918 * 2 1 4 4 N 1.46495 * 109.47279 * 119.99584 * 2 1 3 5 5 C 1.46499 * 120.00306 * 294.49322 * 4 2 1 6 6 C 1.50691 * 109.47446 * 270.00065 * 5 4 2 7 7 H 1.08010 * 120.00155 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00357 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99939 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99987 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47127 * 60.00243 * 10 8 6 12 12 H 1.48507 * 109.46852 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47382 * 299.99738 * 10 8 6 14 14 C 1.34777 * 119.99908 * 114.49518 * 4 2 1 15 15 O 1.21287 * 120.00387 * 184.65699 * 14 4 2 16 16 C 1.50706 * 119.99790 * 4.65592 * 14 4 2 17 17 C 1.53002 * 109.46958 * 203.57534 * 16 14 4 18 18 C 1.52998 * 109.47083 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.47159 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47197 * 299.99909 * 18 17 16 21 21 C 1.52997 * 109.47132 * 59.99836 * 18 17 16 22 22 C 1.53002 * 109.47270 * 300.00050 * 21 18 17 23 23 H 1.09000 * 109.46771 * 300.00240 * 22 21 18 24 24 C 1.52997 * 109.46896 * 180.02562 * 22 21 18 25 25 C 1.52997 * 109.47086 * 83.57475 * 16 14 4 26 26 H 1.09004 * 109.47299 * 299.99606 * 1 2 3 27 27 H 1.09002 * 109.47445 * 60.00227 * 1 2 3 28 28 H 1.08998 * 109.46940 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47154 * 240.00010 * 2 1 3 30 30 H 1.09002 * 109.47178 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46877 * 300.00121 * 3 2 1 32 32 H 1.09004 * 109.47468 * 59.99722 * 3 2 1 33 33 H 1.09001 * 109.46898 * 30.00785 * 5 4 2 34 34 H 1.09000 * 109.47000 * 150.00000 * 5 4 2 35 35 H 0.97004 * 120.00059 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47227 * 323.57069 * 16 14 4 37 37 H 1.09003 * 109.47166 * 60.00116 * 17 16 14 38 38 H 1.09006 * 109.47338 * 300.00167 * 17 16 14 39 39 H 1.09000 * 109.46771 * 59.99555 * 20 18 17 40 40 H 1.08992 * 109.47192 * 180.02562 * 20 18 17 41 41 H 1.08997 * 109.46746 * 300.00273 * 20 18 17 42 42 H 1.09004 * 109.47341 * 60.00386 * 21 18 17 43 43 H 1.09009 * 109.46942 * 179.97438 * 21 18 17 44 44 H 1.09000 * 109.47594 * 299.99721 * 24 22 21 45 45 H 1.08999 * 109.47641 * 60.00222 * 24 22 21 46 46 H 1.09003 * 109.47012 * 180.02562 * 24 22 21 47 47 H 1.08994 * 109.47565 * 300.00011 * 25 16 14 48 48 H 1.09006 * 109.46848 * 60.00055 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7667 -0.1236 2.5234 6 6 2.8993 0.7964 2.8997 7 1 3.7240 0.9445 2.2182 8 6 2.8823 1.4501 4.1135 9 7 1.8779 1.2703 4.9432 10 14 4.2867 2.5900 4.5802 11 1 4.3863 3.6865 3.5837 12 1 4.0308 3.1657 5.9250 13 1 5.5590 1.8245 4.6029 14 6 2.6993 -1.8474 1.0757 15 8 3.0301 -2.4625 2.0672 16 6 3.0495 -2.3766 -0.2912 17 6 3.2642 -3.8895 -0.2127 18 6 3.6204 -4.4268 -1.6002 19 1 3.7729 -5.5046 -1.5444 20 6 2.4791 -4.1235 -2.5731 21 6 4.9032 -3.7545 -2.0936 22 6 4.6885 -2.2417 -2.1721 23 1 3.8754 -2.0257 -2.8651 24 6 5.9711 -1.5696 -2.6661 25 6 4.3321 -1.7045 -0.7851 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.8325 0.4378 2.5074 34 1 1.6943 -0.9287 3.2546 35 1 1.8657 1.7305 5.7970 36 1 2.2361 -2.1606 -0.9839 37 1 2.3504 -4.3684 0.1392 38 1 4.0776 -4.1056 0.4801 39 1 2.3261 -3.0457 -2.6289 40 1 2.7326 -4.5066 -3.5614 41 1 1.5652 -4.6023 -2.2215 42 1 5.7163 -3.9706 -1.4006 43 1 5.1572 -4.1377 -3.0820 44 1 6.7846 -1.7856 -1.9734 45 1 6.2245 -1.9524 -3.6547 46 1 5.8184 -0.4918 -2.7216 47 1 4.1792 -0.6268 -0.8411 48 1 5.1455 -1.9206 -0.0924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542819663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = -73.526110 kcal Electronic energy + Delta-G solvation = -24257.570230 eV Core-core repulsion = 21117.973695 eV Total energy + Delta-G solvation = -3139.596536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14064 -38.10370 -35.87526 -33.13032 -32.86365 -31.56409 -30.73624 -27.42143 -26.82424 -26.60241 -26.30875 -23.77589 -22.16910 -21.35939 -20.79087 -18.71645 -17.75863 -16.67276 -16.39381 -15.50093 -15.02153 -14.73101 -14.31494 -14.06708 -13.84710 -13.79308 -13.48680 -13.30035 -12.82558 -12.58382 -12.38289 -12.20614 -12.17565 -11.73592 -11.62575 -11.59971 -11.50913 -11.25419 -11.10755 -10.97980 -10.90677 -10.80676 -10.77595 -10.50278 -10.38554 -10.29422 -10.07710 -9.93447 -9.80977 -9.50808 -8.64363 -8.38348 -7.56113 -5.99563 -4.02863 3.33095 3.37889 3.39807 3.52047 3.99610 4.47369 4.66805 4.74397 4.78785 5.12902 5.17920 5.23327 5.28403 5.32374 5.35908 5.40436 5.52650 5.58888 5.64735 5.66365 5.71241 5.73529 5.76007 5.84798 5.92864 5.96581 6.03477 6.04959 6.13323 6.18317 6.25494 6.27162 6.32821 6.38479 6.39447 6.42480 6.50031 6.61885 6.65713 7.01315 7.18655 7.53981 7.65338 7.97981 8.30572 8.55187 8.96620 9.21020 9.61310 11.08501 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.005341 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.730761 B = 5241.294476 C = 5530.286963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.154 4.154 4 N -0.593 5.593 5 C 0.246 3.754 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.510 3.490 15 O -0.545 6.545 16 C -0.108 4.108 17 C -0.095 4.095 18 C -0.091 4.091 19 H 0.068 0.932 20 C -0.151 4.151 21 C -0.109 4.109 22 C -0.090 4.090 23 H 0.072 0.928 24 C -0.147 4.147 25 C -0.102 4.102 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -6.274 -17.748 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 C -0.212 4.212 4 N -0.324 5.324 5 C 0.127 3.873 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.296 3.704 15 O -0.423 6.423 16 C -0.130 4.130 17 C -0.133 4.133 18 C -0.110 4.110 19 H 0.087 0.913 20 C -0.208 4.208 21 C -0.146 4.146 22 C -0.109 4.109 23 H 0.090 0.910 24 C -0.204 4.204 25 C -0.139 4.139 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.555 -6.520 -17.010 18.283 hybrid contribution 0.705 0.814 0.391 1.146 sum 2.260 -5.706 -16.618 17.716 Atomic orbital electron populations 1.22181 0.95972 1.01647 1.02278 1.21035 0.93741 0.94235 0.88342 1.22111 1.01497 0.95539 1.02056 1.48307 1.53642 1.21846 1.08611 1.19194 0.96401 0.94003 0.77739 1.21402 1.06402 1.25635 1.02199 0.92517 1.24918 0.95991 0.97067 0.96161 1.69925 1.30810 1.43224 1.09557 0.86633 0.82830 0.80843 0.77550 1.20304 1.21268 1.20292 1.20352 0.78428 0.81122 0.90463 1.90644 1.53778 1.58173 1.39709 1.21384 0.99150 0.96690 0.95742 1.21377 1.02470 0.93359 0.96050 1.21119 0.95159 0.99492 0.95204 0.91320 1.21950 0.98172 1.02045 0.98629 1.21627 0.97424 0.94850 1.00708 1.21149 0.97908 0.95026 0.96799 0.90983 1.21822 0.97517 1.00494 1.00585 1.21504 0.96542 0.99832 0.96064 0.91540 0.92352 0.93031 0.90505 0.92578 0.93448 0.90240 0.95059 0.94114 0.92795 0.89501 0.91972 0.90880 0.92073 0.93087 0.92863 0.91916 0.92310 0.92711 0.92960 0.92642 0.91358 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.26 37.16 0.34 -2.07 16 2 C 0.13 2.16 2.90 -67.93 -0.20 1.97 16 3 C -0.15 -2.58 8.35 37.16 0.31 -2.27 16 4 N -0.59 -12.53 2.38 -167.47 -0.40 -12.93 16 5 C 0.25 6.41 4.48 -5.20 -0.02 6.39 16 6 C -0.52 -14.42 7.85 -34.44 -0.27 -14.69 16 7 H 0.06 1.58 7.53 -52.48 -0.39 1.18 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.51 10.73 6.79 -10.98 -0.07 10.66 16 15 O -0.55 -13.98 15.63 5.55 0.09 -13.89 16 16 C -0.11 -1.66 1.39 -91.77 -0.13 -1.79 16 17 C -0.09 -1.35 4.24 -26.73 -0.11 -1.46 16 18 C -0.09 -0.99 3.19 -90.62 -0.29 -1.28 16 19 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 20 C -0.15 -1.45 8.50 37.16 0.32 -1.14 16 21 C -0.11 -1.12 4.73 -26.73 -0.13 -1.25 16 22 C -0.09 -0.98 2.44 -90.65 -0.22 -1.20 16 23 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 24 C -0.15 -1.45 9.19 37.16 0.34 -1.11 16 25 C -0.10 -1.43 4.32 -26.76 -0.12 -1.54 16 26 H 0.07 1.12 6.89 -51.93 -0.36 0.76 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.08 5.01 -51.93 -0.26 0.82 16 30 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.57 6.94 -51.93 -0.36 1.21 16 33 H 0.03 0.83 6.71 -51.93 -0.35 0.48 16 34 H 0.04 1.22 7.36 -51.93 -0.38 0.84 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.18 4.58 -51.93 -0.24 0.94 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.17 7.88 -51.93 -0.41 0.77 16 39 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.99 7.69 -51.93 -0.40 0.59 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -31.56 359.21 -8.31 -39.86 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.78 Total: -0.24 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.34 Total: -9.17 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.34 Total: -38.87 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.56 -8.31 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542819663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.661 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds