Wall clock time and date at job start Tue Mar 31 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.50843 * 2 1 4 4 C 1.53057 * 109.51163 * 239.85381 * 2 1 3 5 5 N 1.46982 * 109.53234 * 181.44198 * 4 2 1 6 6 C 1.46895 * 111.00530 * 184.03101 * 5 4 2 7 7 C 1.52992 * 109.47361 * 86.72600 * 6 5 4 8 8 C 1.52999 * 109.47467 * 294.69671 * 7 6 5 9 9 C 1.53007 * 109.47078 * 54.69341 * 7 6 5 10 10 C 1.52999 * 109.47537 * 174.69145 * 7 6 5 11 11 C 1.50698 * 109.47334 * 180.02562 * 10 7 6 12 12 H 1.07994 * 120.00313 * 359.97438 * 11 10 7 13 13 C 1.37879 * 119.99636 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99815 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00308 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47106 * 90.00038 * 15 13 11 17 17 H 1.48504 * 109.47112 * 210.00184 * 15 13 11 18 18 H 1.48498 * 109.47142 * 329.99923 * 15 13 11 19 19 C 1.47180 * 110.69314 * 60.29092 * 5 4 2 20 20 C 1.52788 * 108.99182 * 303.63226 * 19 5 4 21 21 C 1.53391 * 113.49405 * 281.99707 * 20 19 5 22 22 C 1.53840 * 86.96331 * 220.13041 * 21 20 19 23 23 C 1.53361 * 113.55674 * 184.10856 * 20 19 5 24 24 O 1.42672 * 112.81380 * 52.97874 * 20 19 5 25 25 H 1.08994 * 109.47406 * 299.91102 * 1 2 3 26 26 H 1.09000 * 109.46779 * 59.90297 * 1 2 3 27 27 H 1.08997 * 109.47311 * 179.90200 * 1 2 3 28 28 H 1.09003 * 109.46477 * 301.45881 * 4 2 1 29 29 H 1.09000 * 109.46418 * 61.43735 * 4 2 1 30 30 H 1.09003 * 109.47500 * 206.73385 * 6 5 4 31 31 H 1.09006 * 109.47030 * 326.72819 * 6 5 4 32 32 H 1.09002 * 109.47305 * 71.97832 * 8 7 6 33 33 H 1.09005 * 109.47539 * 191.97663 * 8 7 6 34 34 H 1.09001 * 109.47097 * 311.97850 * 8 7 6 35 35 H 1.09003 * 109.46565 * 59.99902 * 9 7 6 36 36 H 1.08997 * 109.47453 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47286 * 300.00210 * 9 7 6 38 38 H 1.09003 * 109.47272 * 300.00812 * 10 7 6 39 39 H 1.09003 * 109.46786 * 60.00301 * 10 7 6 40 40 H 0.97004 * 120.00248 * 179.97438 * 14 13 11 41 41 H 1.09001 * 109.55106 * 183.77911 * 19 5 4 42 42 H 1.09003 * 109.54700 * 63.48478 * 19 5 4 43 43 H 1.08996 * 113.63162 * 105.61236 * 21 20 19 44 44 H 1.09000 * 113.63138 * 334.65374 * 21 20 19 45 45 H 1.09005 * 113.60337 * 139.70419 * 22 21 20 46 46 H 1.09002 * 113.60650 * 270.57106 * 22 21 20 47 47 H 1.08999 * 113.63109 * 25.28457 * 23 20 19 48 48 H 1.09002 * 113.63349 * 254.32971 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7245 -1.2476 5 7 3.5107 -0.7550 -1.2306 6 6 4.0390 -1.3592 -2.4609 7 6 4.1797 -0.2822 -3.5384 8 6 2.7941 0.2448 -3.9168 9 6 5.0335 0.8682 -3.0012 10 6 4.8523 -0.8823 -4.7747 11 6 4.9914 0.1788 -5.8357 12 1 4.6354 1.1808 -5.6474 13 6 5.5724 -0.1300 -7.0474 14 7 5.6943 0.7960 -7.9732 15 14 6.1863 -1.8638 -7.3741 16 1 5.0938 -2.6710 -7.9738 17 1 7.3366 -1.8131 -8.3120 18 1 6.6169 -2.4855 -6.0960 19 6 4.0024 -1.4669 -0.0400 20 6 3.4288 -0.8010 1.2097 21 6 4.1470 0.4987 1.5944 22 6 4.0192 0.0401 3.0573 23 6 3.9551 -1.4000 2.5198 24 8 2.0081 -0.6767 1.1678 25 1 -0.3634 0.5124 0.8907 26 1 -0.3633 0.5153 -0.8891 27 1 -0.3634 -1.0276 -0.0018 28 1 1.6570 -1.7445 -1.2583 29 1 1.6994 -0.1983 -2.1388 30 1 5.0149 -1.8008 -2.2589 31 1 3.3548 -2.1334 -2.8083 32 1 2.4031 0.8560 -3.1034 33 1 2.8695 0.8488 -4.8211 34 1 2.1224 -0.5948 -4.0956 35 1 6.0207 0.4927 -2.7315 36 1 5.1342 1.6353 -3.7689 37 1 4.5545 1.2958 -2.1204 38 1 5.8394 -1.2577 -4.5051 39 1 4.2439 -1.7018 -5.1574 40 1 6.1033 0.5789 -8.8255 41 1 5.0910 -1.4206 -0.0110 42 1 3.6810 -2.5078 -0.0788 43 1 3.5748 1.3980 1.3668 44 1 5.1768 0.5499 1.2408 45 1 4.9064 0.2429 3.6574 46 1 3.0978 0.3679 3.5386 47 1 4.9317 -1.8740 2.4222 48 1 3.2285 -2.0272 3.0363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564991116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:04 Heat of formation + Delta-G solvation = -25.938445 kcal Electronic energy + Delta-G solvation = -23999.348032 eV Core-core repulsion = 20861.815053 eV Total energy + Delta-G solvation = -3137.532980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63652 -37.97471 -36.39429 -34.49192 -32.15286 -31.80386 -28.35036 -27.34718 -27.15920 -26.17031 -25.79943 -23.90097 -22.79007 -21.75429 -20.67242 -19.15594 -17.86421 -16.77542 -16.40822 -15.99668 -15.50003 -15.32705 -14.56576 -14.50072 -14.14537 -13.65598 -13.48023 -13.32543 -13.00578 -12.62438 -12.50686 -12.37842 -12.31027 -12.24161 -11.94346 -11.66682 -11.45863 -11.10782 -11.01364 -10.86647 -10.82715 -10.63056 -10.60712 -10.46072 -10.34553 -10.09047 -9.80086 -9.65073 -9.54405 -9.06620 -8.87712 -8.49073 -8.05734 -5.99505 -3.95387 3.31952 3.39847 3.43194 3.48819 3.93076 4.47909 4.48591 4.58994 4.72854 4.80767 4.90909 5.08990 5.14853 5.26610 5.32893 5.35439 5.51358 5.53120 5.56021 5.57403 5.65640 5.71432 5.78864 5.80040 5.85016 5.89058 5.94862 5.97999 6.10332 6.15093 6.18864 6.20443 6.25649 6.46663 6.63774 6.70517 6.82600 7.09377 7.15850 7.17847 7.21436 7.27574 7.33770 7.38777 7.51735 7.86374 8.60704 9.06620 9.63768 11.13605 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026504 B = 0.004236 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.200364 B = 6608.384131 C = 6975.408112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.008 3.992 5 N -0.524 5.524 6 C 0.062 3.938 7 C -0.041 4.041 8 C -0.135 4.135 9 C -0.115 4.115 10 C -0.005 4.005 11 C -0.506 4.506 12 H 0.078 0.922 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.267 1.267 19 C 0.039 3.961 20 C 0.099 3.901 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.125 4.125 24 O -0.361 6.361 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.013 0.987 39 H 0.007 0.993 40 H 0.261 0.739 41 H 0.085 0.915 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.473 -3.262 20.198 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.120 4.120 5 N -0.247 5.247 6 C -0.065 4.065 7 C -0.042 4.042 8 C -0.192 4.192 9 C -0.172 4.172 10 C -0.043 4.043 11 C -0.544 4.544 12 H 0.096 0.904 13 C -0.135 4.135 14 N -0.545 5.545 15 Si 0.703 3.297 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.192 1.192 19 C -0.089 4.089 20 C 0.059 3.941 21 C -0.186 4.186 22 C -0.174 4.174 23 C -0.163 4.163 24 O -0.280 6.280 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.359 -2.825 20.177 21.344 hybrid contribution 0.273 -1.820 -0.692 1.966 sum -6.087 -4.645 19.485 20.936 Atomic orbital electron populations 1.21744 0.93068 1.02754 1.02562 1.22170 0.94303 0.95984 0.84301 0.91471 1.23232 0.88710 0.99930 1.00088 1.62241 1.07332 1.53226 1.01932 1.22396 0.98620 0.96095 0.89372 1.20346 0.95780 0.94517 0.93559 1.22002 0.95759 1.00085 1.01321 1.21576 0.97829 0.98098 0.99682 1.19635 0.94941 0.96508 0.93191 1.21130 1.38603 0.97497 0.97132 0.90373 1.25010 0.95689 0.96619 0.96230 1.69908 1.45376 1.33183 1.06069 0.86858 0.78664 0.85932 0.78258 1.20524 1.21563 1.19197 1.22664 1.00353 0.95580 0.90334 1.22204 0.81594 0.96384 0.93923 1.23322 1.01452 0.98120 0.95702 1.22816 1.01900 0.95983 0.96735 1.22941 1.01131 0.97361 0.94888 1.87909 1.19185 1.78391 1.42513 0.91842 0.90757 0.92072 0.94764 0.87591 0.91741 0.94820 0.93705 0.90952 0.94590 0.94586 0.92283 0.93463 0.96838 0.97492 0.92905 0.89713 0.94716 0.91081 0.89222 0.91518 0.90113 0.88914 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.57 37.16 0.36 -1.07 16 2 C 0.09 1.10 3.32 -26.70 -0.09 1.01 16 3 H 0.07 0.85 7.40 -51.93 -0.38 0.47 16 4 C 0.01 0.11 4.35 -3.75 -0.02 0.10 16 5 N -0.52 -7.53 3.58 -234.42 -0.84 -8.37 16 6 C 0.06 1.03 4.24 -3.83 -0.02 1.01 16 7 C -0.04 -0.79 0.61 -154.51 -0.09 -0.89 16 8 C -0.13 -2.48 6.86 37.16 0.26 -2.22 16 9 C -0.11 -2.18 7.97 37.16 0.30 -1.89 16 10 C 0.00 -0.12 3.11 -27.88 -0.09 -0.20 16 11 C -0.51 -13.89 8.04 -34.44 -0.28 -14.16 16 12 H 0.08 2.29 6.00 -52.49 -0.31 1.98 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -27.70 13.96 55.43 0.77 -26.93 16 15 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 C 0.04 0.50 4.62 -3.78 -0.02 0.48 16 20 C 0.10 1.17 1.11 -90.34 -0.10 1.07 16 21 C -0.15 -1.63 7.27 -26.09 -0.19 -1.82 16 22 C -0.14 -1.28 8.02 -25.85 -0.21 -1.49 16 23 C -0.13 -1.22 7.47 -26.10 -0.19 -1.41 16 24 O -0.36 -4.71 10.14 -35.23 -0.36 -5.06 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.48 8.13 -51.93 -0.42 0.05 16 29 H 0.11 1.46 4.20 -51.93 -0.22 1.24 16 30 H 0.06 1.05 7.73 -51.93 -0.40 0.65 16 31 H 0.03 0.56 7.77 -51.93 -0.40 0.15 16 32 H 0.04 0.73 6.16 -51.93 -0.32 0.41 16 33 H 0.07 1.53 6.32 -51.93 -0.33 1.20 16 34 H 0.04 0.62 7.79 -51.93 -0.40 0.22 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 37 H 0.05 0.82 7.47 -51.93 -0.39 0.43 16 38 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 39 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.83 7.43 -51.93 -0.39 0.45 16 44 H 0.09 0.97 8.01 -51.93 -0.42 0.55 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -29.57 353.20 -9.13 -38.70 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.88 Total: -1.03 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -0.48 Total: -19.71 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.07 Total: -35.30 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.36 Total: -5.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.57 -9.13 -38.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564991116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.759 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds