Wall clock time and date at job start Tue Mar 31 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.54955 * 2 1 4 4 C 1.53067 * 109.50852 * 120.12098 * 2 1 3 5 5 N 1.46985 * 109.52639 * 178.56063 * 4 2 1 6 6 C 1.46893 * 111.00215 * 175.96515 * 5 4 2 7 7 C 1.53005 * 109.47323 * 273.33512 * 6 5 4 8 8 C 1.52997 * 109.46993 * 305.32802 * 7 6 5 9 9 C 1.53000 * 109.46758 * 65.32683 * 7 6 5 10 10 C 1.53000 * 109.47246 * 185.32592 * 7 6 5 11 11 C 1.50697 * 109.46760 * 180.02562 * 10 7 6 12 12 H 1.07999 * 120.00301 * 359.97438 * 11 10 7 13 13 C 1.37881 * 119.99834 * 179.97438 * 11 10 7 14 14 N 1.31510 * 120.00470 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99946 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47170 * 89.99896 * 15 13 11 17 17 H 1.48499 * 109.47324 * 210.00063 * 15 13 11 18 18 H 1.48506 * 109.46812 * 330.00127 * 15 13 11 19 19 C 1.47175 * 110.69426 * 299.70203 * 5 4 2 20 20 C 1.52785 * 108.99190 * 56.36911 * 19 5 4 21 21 C 1.53370 * 113.55573 * 175.90160 * 20 19 5 22 22 C 1.53846 * 86.97422 * 220.19131 * 21 20 19 23 23 C 1.53394 * 113.49797 * 78.01584 * 20 19 5 24 24 O 1.42665 * 112.81526 * 307.02923 * 20 19 5 25 25 H 1.08998 * 109.47302 * 180.12495 * 1 2 3 26 26 H 1.09003 * 109.46667 * 300.11893 * 1 2 3 27 27 H 1.08998 * 109.47051 * 60.11727 * 1 2 3 28 28 H 1.09001 * 109.46224 * 298.57146 * 4 2 1 29 29 H 1.09000 * 109.46825 * 58.55681 * 4 2 1 30 30 H 1.08998 * 109.47309 * 33.33525 * 6 5 4 31 31 H 1.09001 * 109.47078 * 153.33477 * 6 5 4 32 32 H 1.09002 * 109.47417 * 59.99894 * 8 7 6 33 33 H 1.09003 * 109.46942 * 179.97438 * 8 7 6 34 34 H 1.09004 * 109.47110 * 299.99425 * 8 7 6 35 35 H 1.08998 * 109.47211 * 48.56493 * 9 7 6 36 36 H 1.08996 * 109.47046 * 168.56953 * 9 7 6 37 37 H 1.09007 * 109.47009 * 288.56463 * 9 7 6 38 38 H 1.09005 * 109.46792 * 300.00318 * 10 7 6 39 39 H 1.08995 * 109.47121 * 60.00147 * 10 7 6 40 40 H 0.96998 * 120.00144 * 180.02562 * 14 13 11 41 41 H 1.08999 * 109.55279 * 296.51338 * 19 5 4 42 42 H 1.09004 * 109.54706 * 176.22130 * 19 5 4 43 43 H 1.09005 * 113.62809 * 105.66631 * 21 20 19 44 44 H 1.09000 * 113.63278 * 334.71591 * 21 20 19 45 45 H 1.09000 * 113.60694 * 139.71678 * 22 21 20 46 46 H 1.09000 * 113.60390 * 270.57996 * 22 21 20 47 47 H 1.08998 * 113.63039 * 25.34907 * 23 20 19 48 48 H 1.08997 * 113.71492 * 254.39397 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0412 -0.7240 1.2480 5 7 3.5106 -0.7544 1.2310 6 6 4.0389 -1.3580 2.4616 7 6 4.1781 -0.2807 3.5391 8 6 5.0307 0.8706 3.0020 9 6 2.7917 0.2446 3.9172 10 6 4.8511 -0.8799 4.7756 11 6 4.9876 0.1811 5.8370 12 1 4.6305 1.1827 5.6484 13 6 5.5684 -0.1269 7.0490 14 7 5.6880 0.7991 7.9751 15 14 6.1867 -1.8593 7.3750 16 1 7.6054 -1.9668 6.9494 17 1 6.0812 -2.1577 8.8259 18 1 5.3651 -2.8305 6.6088 19 6 4.0024 -1.4669 0.0409 20 6 3.4288 -0.8017 -1.2093 21 6 3.9549 -1.4016 -2.5190 22 6 4.0192 0.0381 -3.0575 23 6 4.1471 0.4976 -1.5949 24 8 2.0082 -0.6773 -1.1673 25 1 -0.3634 -1.0276 0.0022 26 1 -0.3633 0.5157 0.8890 27 1 -0.3633 0.5120 -0.8910 28 1 1.6992 -0.1975 2.1390 29 1 1.6572 -1.7441 1.2590 30 1 3.3554 -2.1328 2.8088 31 1 5.0154 -1.7986 2.2600 32 1 4.5512 1.2976 2.1211 33 1 5.1295 1.6384 3.7694 34 1 6.0184 0.4964 2.7327 35 1 2.1237 -0.5959 4.1053 36 1 2.8677 0.8566 4.8158 37 1 2.3961 0.8473 3.0995 38 1 4.2437 -1.7002 5.1582 39 1 5.8388 -1.2541 4.5063 40 1 6.0970 0.5824 8.8276 41 1 3.6812 -2.5078 0.0802 42 1 5.0911 -1.4205 0.0119 43 1 3.2282 -2.0292 -3.0351 44 1 4.9316 -1.8756 -2.4213 45 1 4.9063 0.2404 -3.6578 46 1 3.0977 0.3656 -3.5389 47 1 5.1769 0.5490 -1.2415 48 1 3.5762 1.3981 -1.3683 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564991118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:07 Heat of formation + Delta-G solvation = -25.781358 kcal Electronic energy + Delta-G solvation = -23999.366303 eV Core-core repulsion = 20861.840135 eV Total energy + Delta-G solvation = -3137.526168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63661 -37.97540 -36.39399 -34.49192 -32.15281 -31.80401 -28.35082 -27.34738 -27.16142 -26.17008 -25.79925 -23.90008 -22.79053 -21.75426 -20.67229 -19.15670 -17.86431 -16.77469 -16.40877 -15.99841 -15.50017 -15.32748 -14.56882 -14.50324 -14.14330 -13.66395 -13.46922 -13.32608 -13.00630 -12.62500 -12.50924 -12.38130 -12.30570 -12.25038 -11.96183 -11.61783 -11.45293 -11.10631 -11.01781 -10.86875 -10.82769 -10.67402 -10.61795 -10.40654 -10.38239 -10.08035 -9.76603 -9.69801 -9.52359 -9.06546 -8.87655 -8.49153 -8.05708 -5.99475 -3.95382 3.32060 3.39850 3.43110 3.48807 3.93106 4.47924 4.48581 4.58959 4.72816 4.80731 4.90922 5.09027 5.14837 5.26652 5.32888 5.35445 5.51414 5.53179 5.55994 5.57383 5.65619 5.71439 5.78874 5.79951 5.84926 5.88908 5.94984 5.98000 6.10411 6.15215 6.18849 6.20296 6.25560 6.46714 6.63962 6.70884 6.82324 7.09187 7.15752 7.17114 7.22777 7.27704 7.33638 7.37787 7.52073 7.86383 8.60712 9.06613 9.63787 11.13629 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.004236 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.108964 B = 6608.208560 C = 6975.930482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.008 3.992 5 N -0.524 5.524 6 C 0.062 3.938 7 C -0.041 4.041 8 C -0.115 4.115 9 C -0.135 4.135 10 C -0.005 4.005 11 C -0.506 4.506 12 H 0.078 0.922 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.267 1.267 19 C 0.039 3.961 20 C 0.099 3.901 21 C -0.125 4.125 22 C -0.137 4.137 23 C -0.148 4.148 24 O -0.361 6.361 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.011 0.989 39 H 0.009 0.991 40 H 0.261 0.739 41 H 0.035 0.965 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 -3.281 -20.185 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.120 4.120 5 N -0.247 5.247 6 C -0.065 4.065 7 C -0.042 4.042 8 C -0.172 4.172 9 C -0.192 4.192 10 C -0.043 4.043 11 C -0.544 4.544 12 H 0.096 0.904 13 C -0.135 4.135 14 N -0.545 5.545 15 Si 0.703 3.297 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.192 1.192 19 C -0.089 4.089 20 C 0.059 3.941 21 C -0.163 4.163 22 C -0.174 4.174 23 C -0.186 4.186 24 O -0.280 6.280 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.398 -2.846 -20.162 21.343 hybrid contribution 0.319 -1.807 0.675 1.955 sum -6.079 -4.653 -19.487 20.937 Atomic orbital electron populations 1.21744 0.93062 1.02755 1.02561 1.22172 0.94303 0.95980 0.84304 0.91470 1.23242 0.88711 0.99940 1.00101 1.62243 1.07337 1.53215 1.01936 1.22396 0.98622 0.96107 0.89363 1.20347 0.95798 0.94502 0.93552 1.21580 0.97835 0.98103 0.99691 1.21999 0.95754 1.00135 1.01262 1.19634 0.94756 0.96708 0.93180 1.21131 1.38627 0.97493 0.97110 0.90374 1.25010 0.95705 0.96585 0.96241 1.69905 1.45364 1.33170 1.06100 0.86861 0.79563 0.86145 0.77154 1.20472 1.21581 1.19225 1.22662 1.00351 0.95580 0.90340 1.22204 0.81594 0.96375 0.93920 1.22942 1.01130 0.97360 0.94888 1.22815 1.01900 0.95985 0.96735 1.23323 1.01456 0.98117 0.95701 1.87906 1.19185 1.78358 1.42550 0.92070 0.90755 0.91841 0.87566 0.94765 0.94814 0.91748 0.93469 0.92290 0.94583 0.94573 0.90966 0.93686 0.97036 0.97287 0.92904 0.94715 0.89715 0.90763 0.88915 0.91519 0.90114 0.89233 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.57 37.16 0.36 -1.07 16 2 C 0.09 1.10 3.32 -26.69 -0.09 1.01 16 3 H 0.07 0.85 7.41 -51.93 -0.38 0.47 16 4 C 0.01 0.11 4.35 -3.74 -0.02 0.09 16 5 N -0.52 -7.53 3.58 -234.42 -0.84 -8.37 16 6 C 0.06 1.03 4.24 -3.83 -0.02 1.01 16 7 C -0.04 -0.79 0.61 -154.51 -0.09 -0.89 16 8 C -0.11 -2.19 7.98 37.16 0.30 -1.89 16 9 C -0.13 -2.48 6.86 37.16 0.25 -2.22 16 10 C 0.00 -0.12 3.11 -27.88 -0.09 -0.20 16 11 C -0.51 -13.89 8.05 -34.44 -0.28 -14.16 16 12 H 0.08 2.29 5.99 -52.49 -0.31 1.98 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -27.70 13.96 55.43 0.77 -26.93 16 15 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 19 C 0.04 0.50 4.62 -3.78 -0.02 0.48 16 20 C 0.10 1.17 1.11 -90.34 -0.10 1.07 16 21 C -0.13 -1.22 7.47 -26.10 -0.19 -1.41 16 22 C -0.14 -1.28 8.02 -25.85 -0.21 -1.49 16 23 C -0.15 -1.63 7.27 -26.09 -0.19 -1.81 16 24 O -0.36 -4.71 10.14 -35.23 -0.36 -5.06 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.11 1.47 4.19 -51.93 -0.22 1.25 16 29 H 0.03 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.03 0.56 7.78 -51.93 -0.40 0.16 16 31 H 0.06 1.05 7.73 -51.93 -0.40 0.65 16 32 H 0.05 0.82 7.47 -51.93 -0.39 0.43 16 33 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.63 7.82 -51.93 -0.41 0.22 16 36 H 0.07 1.52 6.33 -51.93 -0.33 1.19 16 37 H 0.04 0.73 6.11 -51.93 -0.32 0.42 16 38 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.97 8.01 -51.93 -0.42 0.55 16 48 H 0.07 0.83 7.44 -51.93 -0.39 0.45 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -29.58 353.21 -9.13 -38.71 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.88 Total: -1.03 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -0.48 Total: -19.72 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.07 Total: -35.30 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.36 Total: -5.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.58 -9.13 -38.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564991118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.926 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds