Wall clock time and date at job start Tue Mar 31 2020 06:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.53781 * 113.61516 * 249.13657 * 4 3 2 6 6 C 1.54047 * 86.98579 * 270.84201 * 5 4 3 7 7 C 1.52999 * 113.61883 * 220.02376 * 6 5 4 8 8 N 1.46903 * 109.47113 * 272.49659 * 7 6 5 9 9 C 1.46853 * 110.99790 * 294.20906 * 8 7 6 10 10 C 1.53035 * 109.52369 * 174.15993 * 9 8 7 11 11 C 1.53126 * 109.27865 * 59.17884 * 10 9 8 12 12 C 1.52992 * 109.52150 * 182.44028 * 11 10 9 13 13 C 1.50699 * 109.47268 * 294.68177 * 12 11 10 14 14 H 1.08000 * 119.99998 * 359.97438 * 13 12 11 15 15 C 1.37886 * 120.00264 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99683 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00125 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47083 * 89.99638 * 17 15 13 19 19 H 1.48489 * 109.47066 * 209.99844 * 17 15 13 20 20 H 1.48499 * 109.46911 * 329.99966 * 17 15 13 21 21 C 1.53121 * 109.15787 * 302.34587 * 11 10 9 22 22 C 1.46841 * 111.00179 * 170.00026 * 8 7 6 23 23 C 1.53780 * 87.07797 * 334.56783 * 6 5 4 24 24 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 25 25 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 27 27 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 28 28 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 29 29 H 1.08997 * 112.84647 * 20.33846 * 4 3 2 30 30 H 1.09004 * 113.61299 * 25.43303 * 5 4 3 31 31 H 1.08993 * 113.61421 * 156.33679 * 5 4 3 32 32 H 1.08999 * 113.69266 * 89.12726 * 6 5 4 33 33 H 1.09004 * 109.47632 * 32.49039 * 7 6 5 34 34 H 1.08995 * 109.47825 * 152.49321 * 7 6 5 35 35 H 1.09005 * 109.45649 * 294.17623 * 9 8 7 36 36 H 1.08998 * 109.46071 * 54.14122 * 9 8 7 37 37 H 1.08995 * 109.50270 * 299.23657 * 10 9 8 38 38 H 1.08998 * 109.50458 * 179.11441 * 10 9 8 39 39 H 1.09002 * 109.56919 * 62.28026 * 11 10 9 40 40 H 1.08996 * 109.47333 * 54.68397 * 12 11 10 41 41 H 1.09007 * 109.46986 * 174.68370 * 12 11 10 42 42 H 0.96998 * 120.00137 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.50209 * 297.71074 * 21 11 10 44 44 H 1.08998 * 109.50100 * 177.59268 * 21 11 10 45 45 H 1.09003 * 109.46290 * 305.84985 * 22 8 7 46 46 H 1.09001 * 109.46359 * 65.83182 * 22 8 7 47 47 H 1.08997 * 113.61480 * 270.87938 * 23 6 5 48 48 H 1.09001 * 113.61325 * 139.97441 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0048 2.0092 1.3174 6 6 3.8404 3.4146 0.7084 7 6 5.0028 4.3586 1.0224 8 7 4.7508 5.0374 2.3006 9 6 3.5872 5.9279 2.2030 10 6 3.2669 6.5041 3.5841 11 6 4.4824 7.2769 4.1038 12 6 4.1901 7.8041 5.5100 13 6 3.0790 8.8201 5.4447 14 1 2.6269 9.0657 4.4951 15 6 2.6404 9.4371 6.5972 16 7 3.1912 9.1385 7.7533 17 14 1.2627 10.6960 6.5163 18 1 -0.0443 10.0108 6.6816 19 1 1.4395 11.6936 7.6019 20 1 1.2978 11.3843 5.2009 21 6 5.6919 6.3391 4.1500 22 6 5.9419 5.7677 2.7525 23 6 3.9474 2.7435 -0.6711 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9272 0.5546 -0.3482 30 1 3.3652 1.8287 2.1814 31 1 5.0432 1.7278 1.4920 32 1 2.8663 3.8642 0.9009 33 1 5.9276 3.7858 1.0915 34 1 5.0933 5.1002 0.2289 35 1 3.8096 6.7416 1.5126 36 1 2.7288 5.3651 1.8363 37 1 3.0310 5.6918 4.2715 38 1 2.4129 7.1773 3.5085 39 1 4.6952 8.1134 3.4381 40 1 3.8887 6.9770 6.1527 41 1 5.0869 8.2719 5.9163 42 1 2.8824 9.5722 8.5642 43 1 5.4941 5.5242 4.8464 44 1 6.5705 6.8943 4.4786 45 1 6.7938 5.0884 2.7850 46 1 6.1531 6.5822 2.0597 47 1 4.9701 2.6625 -1.0391 48 1 3.2614 3.1553 -1.4113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570448318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:10 Heat of formation + Delta-G solvation = -46.737231 kcal Electronic energy + Delta-G solvation = -22488.449530 eV Core-core repulsion = 19350.014647 eV Total energy + Delta-G solvation = -3138.434883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -39.91853 -38.46376 -36.48933 -34.20866 -32.21430 -31.13020 -30.32044 -28.63070 -26.35195 -25.77565 -23.78353 -23.08900 -22.77184 -21.82579 -20.50913 -19.43823 -18.82923 -16.74328 -16.21224 -15.89485 -15.71570 -15.47600 -14.80154 -14.46244 -14.42481 -13.69400 -13.42794 -13.33867 -13.18019 -12.91172 -12.72371 -12.47855 -12.31245 -12.02641 -11.79627 -11.68190 -11.57480 -11.34630 -11.08977 -10.82054 -10.74379 -10.63262 -10.56303 -10.39692 -10.21284 -10.09722 -9.85478 -9.59376 -9.44955 -8.96545 -8.81395 -8.27999 -7.96170 -5.92957 -3.94074 3.35753 3.36389 3.41932 3.45104 4.08422 4.50610 4.51437 4.58157 4.70561 4.81688 4.84656 4.98823 5.09598 5.12215 5.31745 5.41574 5.42344 5.48697 5.53139 5.54681 5.59431 5.64191 5.69329 5.72344 5.75903 5.85050 5.86662 5.96904 6.04491 6.07070 6.15718 6.22170 6.29016 6.43690 6.53385 6.66702 6.75578 7.06142 7.09229 7.18636 7.27239 7.46255 7.49633 7.76019 7.93308 8.08431 8.51830 9.12617 9.69098 11.18481 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.003200 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.117975 B = 8747.095428 C = 9681.106834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.367 6.367 4 C 0.061 3.939 5 C -0.143 4.143 6 C -0.096 4.096 7 C 0.064 3.936 8 N -0.534 5.534 9 C 0.054 3.946 10 C -0.099 4.099 11 C -0.081 4.081 12 C 0.028 3.972 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.111 4.111 22 C 0.060 3.940 23 C -0.137 4.137 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.259 0.741 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.026 0.974 47 H 0.090 0.910 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -17.601 -17.289 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.286 6.286 4 C 0.003 3.997 5 C -0.181 4.181 6 C -0.114 4.114 7 C -0.064 4.064 8 N -0.258 5.258 9 C -0.073 4.073 10 C -0.137 4.137 11 C -0.100 4.100 12 C -0.009 4.009 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.149 4.149 22 C -0.068 4.068 23 C -0.175 4.175 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.044 0.956 47 H 0.108 0.892 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.596 -17.747 -16.748 24.454 hybrid contribution -0.392 1.135 -0.517 1.308 sum 1.204 -16.611 -17.265 23.989 Atomic orbital electron populations 1.21752 0.93744 1.02170 1.03307 1.22500 0.95583 0.83922 0.99877 1.87907 1.19889 1.26145 1.94627 1.23056 0.81489 0.97517 0.97647 1.23455 1.01127 0.96166 0.97354 1.22543 0.99673 0.94528 0.94696 1.22090 0.97688 0.96226 0.90364 1.61923 1.05020 1.31176 1.27729 1.22248 0.92736 0.93762 0.98597 1.21537 0.99004 0.99202 0.93939 1.21229 0.92771 0.95521 1.00453 1.19114 0.96355 0.95655 0.89769 1.21269 1.18340 1.22371 0.93154 0.92730 1.25020 0.96825 0.97062 0.95627 1.69965 1.42230 1.43308 0.98151 0.86654 0.82673 0.81445 0.77594 1.20719 1.21345 1.19967 1.21682 0.99041 0.99247 0.94948 1.22089 0.91772 0.95678 0.97252 1.23235 1.01110 0.95677 0.97496 0.91913 0.91188 0.91625 0.93600 0.93351 0.91376 0.90747 0.89564 0.88453 0.91242 0.95329 0.95713 0.91374 0.91925 0.91060 0.93162 0.96533 0.96832 0.93139 0.91654 0.92287 0.91854 0.95623 0.89198 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.49 6.50 37.16 0.24 0.73 16 3 O -0.37 -4.13 10.27 -35.23 -0.36 -4.49 16 4 C 0.06 0.59 4.36 -25.92 -0.11 0.48 16 5 C -0.14 -1.52 7.48 -25.78 -0.19 -1.72 16 6 C -0.10 -1.09 3.65 -89.67 -0.33 -1.42 16 7 C 0.06 0.78 4.80 -3.82 -0.02 0.76 16 8 N -0.53 -8.02 4.66 -234.67 -1.09 -9.11 16 9 C 0.05 0.88 5.31 -3.83 -0.02 0.86 16 10 C -0.10 -1.94 5.15 -26.65 -0.14 -2.07 16 11 C -0.08 -1.71 2.20 -90.50 -0.20 -1.90 16 12 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 13 C -0.51 -14.58 8.45 -34.44 -0.29 -14.87 16 14 H 0.05 1.51 7.08 -52.49 -0.37 1.14 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 17 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 21 C -0.11 -2.00 5.38 -26.65 -0.14 -2.14 16 22 C 0.06 0.91 5.46 -3.84 -0.02 0.89 16 23 C -0.14 -1.29 7.47 -25.92 -0.19 -1.48 16 24 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 32 H 0.10 1.30 6.16 -51.93 -0.32 0.98 16 33 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 34 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 1.04 6.08 -51.93 -0.32 0.72 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.48 7.05 -51.93 -0.37 1.11 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -30.61 370.00 -10.75 -41.35 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -9.33 Total: -3.12 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -1.25 Total: -20.53 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.36 Total: -35.75 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.36 Total: -4.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.61 -10.75 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570448318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.384 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds