Wall clock time and date at job start Tue Mar 31 2020 06:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99813 * 2 1 4 4 C 1.52997 * 110.01535 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47243 * 66.07165 * 4 3 2 6 6 C 1.46850 * 110.99979 * 158.54835 * 5 4 3 7 7 C 1.53038 * 109.51917 * 185.83984 * 6 5 4 8 8 C 1.53121 * 109.27942 * 300.82182 * 7 6 5 9 9 C 1.53000 * 109.52172 * 177.56157 * 8 7 6 10 10 C 1.50697 * 109.46985 * 174.99912 * 9 8 7 11 11 H 1.07998 * 120.00159 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00087 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00323 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99819 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47094 * 89.99848 * 14 12 10 16 16 H 1.48501 * 109.46712 * 209.99597 * 14 12 10 17 17 H 1.48496 * 109.46821 * 329.99600 * 14 12 10 18 18 C 1.53120 * 109.16017 * 57.65796 * 8 7 6 19 19 C 1.46844 * 110.99889 * 282.76072 * 5 4 3 20 20 C 1.54262 * 110.03757 * 301.39551 * 3 2 1 21 21 C 1.54964 * 104.16347 * 95.74846 * 20 3 2 22 22 C 1.54891 * 102.77315 * 37.89230 * 21 20 3 23 23 C 1.53880 * 110.03052 * 58.61103 * 3 2 1 24 24 H 1.09002 * 109.46731 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46833 * 299.99472 * 1 2 3 26 26 H 1.09000 * 109.46877 * 59.99942 * 1 2 3 27 27 H 1.09002 * 109.47129 * 306.06948 * 4 3 2 28 28 H 1.09003 * 109.47237 * 186.06853 * 4 3 2 29 29 H 1.08997 * 109.45687 * 65.82540 * 6 5 4 30 30 H 1.08997 * 109.46660 * 305.85406 * 6 5 4 31 31 H 1.09001 * 109.50179 * 180.88311 * 7 6 5 32 32 H 1.08996 * 109.50472 * 60.76515 * 7 6 5 33 33 H 1.09003 * 109.51995 * 297.74918 * 8 7 6 34 34 H 1.09002 * 109.47333 * 295.00054 * 9 8 7 35 35 H 1.09002 * 109.47100 * 54.99934 * 9 8 7 36 36 H 0.96991 * 120.00158 * 179.97438 * 13 12 10 37 37 H 1.08993 * 109.50286 * 62.28265 * 18 8 7 38 38 H 1.08995 * 109.49887 * 182.40576 * 18 8 7 39 39 H 1.08998 * 109.46094 * 54.14381 * 19 5 4 40 40 H 1.09002 * 109.46437 * 294.17575 * 19 5 4 41 41 H 1.09003 * 110.49105 * 214.40327 * 20 3 2 42 42 H 1.09007 * 110.48394 * 337.04480 * 20 3 2 43 43 H 1.08997 * 110.72426 * 279.58073 * 21 20 3 44 44 H 1.09005 * 110.76364 * 156.22159 * 21 20 3 45 45 H 1.08998 * 110.48781 * 203.40461 * 22 21 20 46 46 H 1.09001 * 110.49085 * 80.75760 * 22 21 20 47 47 H 1.09002 * 110.03060 * 359.95348 * 23 3 2 48 48 H 1.09001 * 110.03346 * 121.33032 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5365 1.1992 -0.0006 5 7 3.9855 0.6050 -1.2669 6 6 5.3903 0.9379 -1.5355 7 6 5.7800 0.4281 -2.9248 8 6 5.5751 -1.0883 -2.9828 9 6 5.9052 -1.5954 -4.3881 10 6 5.8222 -3.0999 -4.4114 11 1 5.5599 -3.6403 -3.5139 12 6 6.0802 -3.7865 -5.5790 13 7 6.0083 -5.0996 -5.5993 14 14 6.5332 -2.8518 -7.1316 15 1 8.0073 -2.6847 -7.1964 16 1 6.0684 -3.6114 -8.3200 17 1 5.8839 -1.5165 -7.1126 18 6 4.1154 -1.4112 -2.6520 19 6 3.7740 -0.8481 -1.2705 20 6 1.5355 2.0954 -1.2371 21 6 0.3350 2.9268 -0.7183 22 6 0.7908 3.3353 0.7045 23 6 1.5367 2.0932 1.2341 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8573 0.5702 0.8298 28 1 3.9700 2.1934 0.1080 29 1 6.0249 0.4671 -0.7847 30 1 5.5215 2.0192 -1.4954 31 1 6.8271 0.6614 -3.1176 32 1 5.1550 0.9088 -3.6774 33 1 6.2288 -1.5721 -2.2570 34 1 5.1920 -1.1811 -5.1007 35 1 6.9135 -1.2828 -4.6597 36 1 6.1894 -5.5825 -6.4207 37 1 3.4642 -0.9594 -3.4002 38 1 3.9733 -2.4918 -2.6498 39 1 2.7312 -1.0639 -1.0380 40 1 4.4162 -1.3105 -0.5209 41 1 2.3272 2.7524 -1.5972 42 1 1.2161 1.4137 -2.0254 43 1 -0.5668 2.3162 -0.6746 44 1 0.1770 3.8074 -1.3410 45 1 -0.0720 3.5585 1.3321 46 1 1.4623 4.1927 0.6586 47 1 0.8629 1.4800 1.8326 48 1 2.3942 2.3991 1.8335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572603436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:08 Heat of formation + Delta-G solvation = -63.244126 kcal Electronic energy + Delta-G solvation = -23681.856943 eV Core-core repulsion = 20542.706268 eV Total energy + Delta-G solvation = -3139.150675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19694 -38.25678 -35.31613 -34.47877 -32.26535 -30.35272 -30.02302 -28.95788 -27.78913 -26.27939 -24.57171 -22.78259 -22.41424 -21.01164 -20.31440 -19.62780 -18.85884 -16.90083 -16.61825 -15.97614 -15.46624 -15.15839 -14.55056 -14.46620 -14.28537 -14.14652 -13.49897 -13.27668 -13.08456 -12.82002 -12.69643 -12.41298 -12.04259 -11.82398 -11.77763 -11.66720 -11.38877 -11.22369 -11.14983 -11.03891 -10.87373 -10.70230 -10.60312 -10.45514 -10.42244 -10.05166 -9.64213 -9.53832 -9.37661 -9.06397 -8.91098 -8.44971 -7.97814 -5.96083 -3.92390 3.36114 3.43373 3.48385 3.73889 4.05419 4.46416 4.52706 4.54511 4.68736 4.99302 5.17115 5.20094 5.31167 5.35730 5.37478 5.39801 5.42733 5.45075 5.46871 5.51740 5.59097 5.68761 5.70240 5.74775 5.75350 5.83464 5.90298 6.00478 6.05104 6.11120 6.18131 6.23689 6.29999 6.44516 6.49342 6.62169 6.72200 6.97323 7.09073 7.17685 7.24872 7.36559 7.42970 7.54239 7.61704 7.90148 8.64237 9.09918 9.67472 11.17505 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028238 B = 0.003810 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.347304 B = 7348.171987 C = 7582.410903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.368 6.368 3 C 0.121 3.879 4 C 0.072 3.928 5 N -0.530 5.530 6 C 0.058 3.942 7 C -0.113 4.113 8 C -0.073 4.073 9 C -0.009 4.009 10 C -0.512 4.512 11 H 0.072 0.928 12 C 0.064 3.936 13 N -0.907 5.907 14 Si 0.878 3.122 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.099 4.099 19 C 0.051 3.949 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.152 4.152 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.015 0.985 35 H 0.008 0.992 36 H 0.261 0.739 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.021 0.979 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.537 17.678 13.458 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C 0.081 3.919 4 C -0.057 4.057 5 N -0.254 5.254 6 C -0.070 4.070 7 C -0.151 4.151 8 C -0.092 4.092 9 C -0.046 4.046 10 C -0.550 4.550 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.546 5.546 14 Si 0.706 3.294 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.190 1.190 18 C -0.136 4.136 19 C -0.076 4.076 20 C -0.165 4.165 21 C -0.175 4.175 22 C -0.160 4.160 23 C -0.190 4.190 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.040 0.960 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.670 17.547 12.962 24.286 hybrid contribution 0.621 0.194 -0.191 0.678 sum -10.049 17.741 12.772 24.059 Atomic orbital electron populations 1.22857 0.82238 1.02224 0.99957 1.88005 1.18974 1.27086 1.94602 1.22184 0.93015 0.83167 0.93509 1.22100 0.92263 0.99589 0.91710 1.61912 1.19529 1.12776 1.31222 1.22102 0.87945 0.99218 0.97690 1.21701 1.00149 0.97717 0.95492 1.21056 0.96125 0.92566 0.99460 1.19608 0.95608 0.97043 0.92323 1.21177 1.46367 0.89789 0.97621 0.90970 1.25033 0.95110 0.94682 0.98799 1.69919 1.50552 1.06459 1.27714 0.86804 0.78931 0.80537 0.83166 1.20488 1.21558 1.19002 1.21530 0.96458 1.00975 0.94675 1.22441 1.01994 0.85434 0.97706 1.22751 0.97386 0.98775 0.97623 1.22772 0.98542 0.99999 0.96154 1.22325 0.99612 0.97513 0.96518 1.22804 1.00798 0.97212 0.98216 0.90131 0.94280 0.93540 0.94303 0.90176 0.95501 0.91897 0.92365 0.91737 0.92621 0.96626 0.97369 0.92921 0.92226 0.90713 0.88818 0.96032 0.90291 0.90424 0.91465 0.91601 0.91900 0.91531 0.90808 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.42 101.05 0.95 1.18 16 2 O -0.37 -4.67 7.53 -35.23 -0.27 -4.93 16 3 C 0.12 1.34 0.94 -89.50 -0.08 1.26 16 4 C 0.07 0.87 3.98 -3.83 -0.02 0.85 16 5 N -0.53 -7.71 4.05 -234.67 -0.95 -8.66 16 6 C 0.06 0.84 5.42 -3.83 -0.02 0.82 16 7 C -0.11 -1.90 5.38 -26.65 -0.14 -2.05 16 8 C -0.07 -1.50 2.20 -90.50 -0.20 -1.70 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.51 -14.74 9.00 -34.44 -0.31 -15.05 16 11 H 0.07 2.23 7.32 -52.49 -0.38 1.85 16 12 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 13 N -0.91 -28.44 13.96 55.43 0.77 -27.66 16 14 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 18 C -0.10 -1.93 5.15 -26.65 -0.14 -2.07 16 19 C 0.05 0.85 5.22 -3.83 -0.02 0.83 16 20 C -0.13 -1.37 4.90 -25.03 -0.12 -1.50 16 21 C -0.14 -1.17 6.38 -24.70 -0.16 -1.33 16 22 C -0.12 -0.94 6.83 -25.07 -0.17 -1.12 16 23 C -0.15 -1.35 5.70 -25.61 -0.15 -1.50 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.33 6.30 -51.93 -0.33 0.00 16 26 H 0.05 0.44 5.45 -51.93 -0.28 0.16 16 27 H 0.04 0.50 7.98 -51.93 -0.41 0.08 16 28 H 0.08 0.84 7.77 -51.93 -0.40 0.44 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 35 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.63 7.05 -51.93 -0.37 1.26 16 39 H 0.09 1.56 5.29 -51.93 -0.27 1.29 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 42 H 0.08 0.97 7.57 -51.93 -0.39 0.58 16 43 H 0.07 0.55 6.06 -51.93 -0.31 0.24 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.66 6.31 -51.93 -0.33 0.33 16 48 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -30.76 348.31 -9.50 -40.26 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -8.87 Total: -1.98 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.77 Total: -19.85 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.18 Total: -36.33 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.27 Total: -4.93 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.76 -9.50 -40.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572603436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.985 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds