Wall clock time and date at job start Tue Mar 31 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46894 * 2 1 4 4 C 1.53002 * 109.46549 * 119.99724 * 2 1 3 5 5 C 1.52996 * 109.46934 * 65.00694 * 4 2 1 6 6 H 1.08999 * 109.47275 * 304.98958 * 5 4 2 7 7 C 1.52996 * 109.47811 * 64.99566 * 5 4 2 8 8 C 1.50705 * 109.46710 * 184.99777 * 5 4 2 9 9 O 1.21274 * 120.00116 * 345.31809 * 8 5 4 10 10 N 1.34778 * 119.99931 * 165.32154 * 8 5 4 11 11 C 1.46928 * 120.62943 * 354.65863 * 10 8 5 12 12 C 1.53190 * 108.89328 * 233.51476 * 11 10 8 13 13 C 1.53073 * 109.29776 * 305.58001 * 12 11 10 14 14 C 1.53000 * 109.45603 * 181.23987 * 13 12 11 15 15 C 1.50701 * 109.46658 * 64.79156 * 14 13 12 16 16 H 1.07997 * 120.00424 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99777 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00037 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47199 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47311 * 120.00012 * 19 17 15 22 22 H 1.48504 * 109.47131 * 240.00145 * 19 17 15 23 23 C 1.53042 * 109.65707 * 61.15164 * 13 12 11 24 24 C 1.46928 * 120.63203 * 174.63814 * 10 8 5 25 25 H 1.09001 * 109.47434 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47590 * 300.00199 * 1 2 3 27 27 H 1.09002 * 109.47209 * 60.00139 * 1 2 3 28 28 H 1.09002 * 109.46874 * 239.99876 * 2 1 3 29 29 H 1.08999 * 109.46985 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47580 * 299.99785 * 3 2 1 31 31 H 1.09000 * 109.47650 * 59.99724 * 3 2 1 32 32 H 1.08993 * 109.47386 * 304.99980 * 4 2 1 33 33 H 1.09001 * 109.46640 * 185.00007 * 4 2 1 34 34 H 1.08996 * 109.47047 * 53.49879 * 7 5 4 35 35 H 1.08997 * 109.47301 * 173.50110 * 7 5 4 36 36 H 1.08998 * 109.46778 * 293.50247 * 7 5 4 37 37 H 1.08993 * 109.58877 * 353.37514 * 11 10 8 38 38 H 1.09008 * 109.58272 * 113.66121 * 11 10 8 39 39 H 1.09002 * 109.49922 * 65.38864 * 12 11 10 40 40 H 1.08998 * 109.49970 * 185.48839 * 12 11 10 41 41 H 1.09002 * 109.34687 * 301.13185 * 13 12 11 42 42 H 1.09000 * 109.47480 * 184.78816 * 14 13 12 43 43 H 1.08999 * 109.47166 * 304.79610 * 14 13 12 44 44 H 0.97003 * 119.99573 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.49773 * 178.74838 * 23 13 12 46 46 H 1.09004 * 109.52375 * 58.66801 * 23 13 12 47 47 H 1.08996 * 109.58654 * 246.20322 * 24 10 8 48 48 H 1.09001 * 109.58347 * 6.48478 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 1 0.5563 -2.2707 1.0527 7 6 2.3448 -2.8708 0.0128 8 6 2.0292 -2.8783 2.4723 9 8 2.8037 -2.3382 3.2334 10 7 1.5210 -4.0893 2.7751 11 6 0.4944 -4.7046 1.9229 12 6 -0.7065 -5.0898 2.7925 13 6 -0.2315 -5.9745 3.9478 14 6 -1.4326 -6.3868 4.8012 15 6 -2.3561 -7.2527 3.9835 16 1 -2.1111 -7.4852 2.9577 17 6 -3.5143 -7.7471 4.5447 18 7 -3.8130 -7.4635 5.7937 19 14 -4.6594 -8.8197 3.5309 20 1 -4.1006 -8.9879 2.1654 21 1 -4.7945 -10.1494 4.1782 22 1 -5.9939 -8.1741 3.4430 23 6 0.7664 -5.2006 4.8123 24 6 1.9833 -4.8194 3.9633 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2617 2.1370 33 1 3.1262 -0.6443 1.2953 34 1 3.4181 -2.6961 0.0875 35 1 2.1485 -3.9426 0.0372 36 1 1.9734 -2.4545 -0.9236 37 1 0.1794 -3.9938 1.1591 38 1 0.9016 -5.5965 1.4465 39 1 -1.1692 -4.1882 3.1938 40 1 -1.4328 -5.6344 2.1892 41 1 0.2510 -6.8654 3.5457 42 1 -1.0860 -6.9454 5.6707 43 1 -1.9670 -5.4959 5.1309 44 1 -4.6277 -7.8117 6.1885 45 1 1.0861 -5.8251 5.6466 46 1 0.2924 -4.2967 5.1951 47 1 2.5111 -5.7220 3.6552 48 1 2.6527 -4.1851 4.5444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573326627.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:31 Heat of formation + Delta-G solvation = -81.797484 kcal Electronic energy + Delta-G solvation = -23100.644713 eV Core-core repulsion = 19960.689503 eV Total energy + Delta-G solvation = -3139.955209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29556 -37.76764 -36.71710 -34.07202 -32.96068 -31.94035 -30.60928 -28.05008 -27.35663 -26.82170 -25.05732 -23.50718 -22.77486 -21.48227 -20.06293 -19.35977 -18.49507 -17.08957 -16.30533 -15.85382 -15.55723 -14.99843 -14.55308 -14.23890 -14.05104 -13.81424 -13.58201 -13.48554 -13.05534 -12.89085 -12.74275 -12.45733 -12.33307 -12.20763 -12.08478 -11.77771 -11.63268 -11.38113 -11.20147 -10.99733 -10.86470 -10.79679 -10.70186 -10.65780 -10.59509 -10.44731 -10.11549 -9.72112 -9.44000 -9.25076 -8.97021 -8.37904 -8.31302 -6.01726 -4.03844 2.78240 3.18410 3.28406 3.36489 3.39044 4.43368 4.44522 4.56356 4.70614 4.88004 4.97130 5.05483 5.11804 5.28261 5.33391 5.40266 5.42547 5.45804 5.49637 5.52832 5.58059 5.62047 5.69037 5.71898 5.74265 5.77470 5.85001 5.92392 5.97157 5.99620 6.04773 6.09101 6.23507 6.28191 6.38299 6.39567 6.52554 6.70539 6.95967 6.98449 7.09871 7.62239 7.65690 7.80130 7.98158 8.34551 8.40330 9.02963 9.60102 11.09557 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021998 B = 0.003641 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.521348 B = 7687.490303 C = 8337.418651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.094 4.094 5 C -0.114 4.114 6 H 0.097 0.903 7 C -0.143 4.143 8 C 0.517 3.483 9 O -0.552 6.552 10 N -0.605 5.605 11 C 0.102 3.898 12 C -0.119 4.119 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.129 4.129 24 C 0.111 3.889 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.931 11.895 -12.550 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.132 4.132 5 C -0.135 4.135 6 H 0.115 0.885 7 C -0.200 4.200 8 C 0.306 3.694 9 O -0.431 6.431 10 N -0.338 5.338 11 C -0.020 4.020 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.167 4.167 24 C -0.011 4.011 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.211 12.140 -12.010 20.428 hybrid contribution -0.910 -0.774 -0.391 1.257 sum 10.301 11.366 -12.401 19.725 Atomic orbital electron populations 1.21924 0.95238 1.01975 1.01751 1.21186 0.95940 0.96170 0.98440 1.21823 1.00917 0.96001 1.01647 1.21467 1.01674 0.92262 0.97792 1.21389 1.02363 0.96355 0.93390 0.88463 1.21800 1.00764 1.00652 0.96810 1.20644 0.80508 0.80691 0.87601 1.90643 1.36601 1.64410 1.51404 1.48171 1.40296 1.18377 1.26935 1.21983 0.89038 0.97811 0.93178 1.21913 0.95868 1.00252 0.97714 1.21186 0.97123 0.96119 0.95451 1.19129 0.91049 0.96249 0.94562 1.21271 1.05417 1.30420 0.98274 0.92547 1.25031 0.98028 0.96543 0.94917 1.69979 1.25280 1.45490 1.12696 0.86593 0.80905 0.80406 0.80426 1.19750 1.21094 1.21096 1.22012 0.95677 1.00713 0.98285 1.21652 0.97217 0.95751 0.86476 0.92368 0.92582 0.92841 0.90957 0.92753 0.92843 0.92671 0.91466 0.91173 0.92141 0.91981 0.91353 0.90349 0.91626 0.92321 0.89682 0.92403 0.96605 0.96656 0.93098 0.91218 0.92123 0.91971 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.95 37.16 0.33 -0.93 16 2 C -0.10 -0.83 2.79 -90.62 -0.25 -1.08 16 3 C -0.15 -1.14 9.19 37.15 0.34 -0.80 16 4 C -0.09 -1.00 3.47 -26.73 -0.09 -1.10 16 5 C -0.11 -1.26 1.73 -91.77 -0.16 -1.42 16 6 H 0.10 1.01 4.82 -51.93 -0.25 0.76 16 7 C -0.14 -1.30 8.53 37.16 0.32 -0.99 16 8 C 0.52 7.68 6.90 -10.98 -0.08 7.60 16 9 O -0.55 -9.99 15.50 5.56 0.09 -9.90 16 10 N -0.61 -8.87 2.97 -172.77 -0.51 -9.39 16 11 C 0.10 1.37 5.33 -3.71 -0.02 1.35 16 12 C -0.12 -2.03 5.19 -26.60 -0.14 -2.17 16 13 C -0.08 -1.54 2.10 -90.56 -0.19 -1.73 16 14 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 15 C -0.52 -13.86 8.39 -34.44 -0.29 -14.15 16 16 H 0.06 1.46 7.05 -52.49 -0.37 1.09 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 19 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.13 -2.20 5.36 -26.61 -0.14 -2.34 16 24 C 0.11 1.69 6.44 -3.71 -0.02 1.67 16 25 H 0.06 0.48 6.46 -51.93 -0.34 0.15 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.56 6.49 -51.93 -0.34 0.22 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.57 6.99 -51.93 -0.36 0.21 16 36 H 0.07 0.50 6.78 -51.93 -0.35 0.15 16 37 H 0.08 0.87 5.31 -51.93 -0.28 0.59 16 38 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 1.33 7.00 -51.93 -0.36 0.97 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -30.68 363.24 -8.75 -39.44 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.90 Total: -1.88 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.61 Total: -14.06 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.22 Total: -35.15 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.68 -8.75 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573326627.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.359 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds