Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47209 * 2 1 4 4 C 1.53002 * 109.47443 * 119.99964 * 2 1 3 5 5 C 1.52999 * 109.47294 * 174.51985 * 4 2 1 6 6 H 1.08994 * 109.47176 * 54.86648 * 5 4 2 7 7 C 1.53001 * 109.47037 * 294.86800 * 5 4 2 8 8 C 1.50702 * 109.47055 * 174.86901 * 5 4 2 9 9 O 1.21283 * 120.00039 * 23.40440 * 8 5 4 10 10 N 1.34772 * 119.99955 * 203.41268 * 8 5 4 11 11 C 1.46928 * 120.63059 * 4.40396 * 10 8 5 12 12 C 1.52758 * 109.00940 * 233.58558 * 11 10 8 13 13 C 1.53041 * 109.38649 * 305.58968 * 12 11 10 14 14 C 1.52996 * 109.45388 * 181.25055 * 13 12 11 15 15 C 1.50702 * 109.47012 * 64.93874 * 14 13 12 16 16 H 1.08005 * 120.00116 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00298 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99932 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00205 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47096 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46894 * 120.00072 * 19 17 15 22 22 H 1.48499 * 109.47194 * 240.00371 * 19 17 15 23 23 C 1.53044 * 109.53574 * 61.23872 * 13 12 11 24 24 C 1.46928 * 120.62884 * 184.68685 * 10 8 5 25 25 H 1.08999 * 109.47016 * 184.69494 * 1 2 3 26 26 H 1.08995 * 109.46994 * 304.69663 * 1 2 3 27 27 H 1.09000 * 109.46989 * 64.69573 * 1 2 3 28 28 H 1.09002 * 109.47674 * 240.00431 * 2 1 3 29 29 H 1.09002 * 109.47745 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47194 * 299.99951 * 3 2 1 31 31 H 1.09002 * 109.47130 * 60.00000 * 3 2 1 32 32 H 1.08999 * 109.47036 * 294.51936 * 4 2 1 33 33 H 1.09005 * 109.46886 * 54.52104 * 4 2 1 34 34 H 1.08992 * 109.47263 * 62.33767 * 7 5 4 35 35 H 1.09001 * 109.46591 * 182.33943 * 7 5 4 36 36 H 1.09000 * 109.47142 * 302.32849 * 7 5 4 37 37 H 1.08999 * 109.58991 * 353.42082 * 11 10 8 38 38 H 1.09002 * 109.58688 * 113.84458 * 11 10 8 39 39 H 1.08997 * 109.56887 * 185.55038 * 12 11 10 40 40 H 1.09003 * 109.36219 * 65.49902 * 12 11 10 41 41 H 1.09002 * 109.45919 * 301.21794 * 13 12 11 42 42 H 1.08999 * 109.47230 * 184.93616 * 14 13 12 43 43 H 1.09001 * 109.47128 * 304.94143 * 14 13 12 44 44 H 0.97001 * 119.99698 * 179.97438 * 18 17 15 45 45 H 1.09009 * 109.49530 * 178.68778 * 23 13 12 46 46 H 1.08992 * 109.52725 * 58.60736 * 23 13 12 47 47 H 1.09000 * 109.58669 * 246.15220 * 24 10 8 48 48 H 1.08996 * 109.58960 * 6.44075 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5638 -0.8416 1.1822 6 1 4.0005 0.1469 1.0401 7 6 3.9530 -1.7444 0.0099 8 6 4.0776 -1.4378 2.4674 9 8 3.3450 -2.1145 3.1575 10 7 5.3512 -1.2188 2.8500 11 6 6.2220 -0.3236 2.0759 12 6 7.5068 -1.0676 1.7165 13 6 8.1475 -1.6203 2.9917 14 6 9.4507 -2.3390 2.6370 15 6 10.4411 -1.3430 2.0908 16 1 10.1684 -0.3014 2.0057 17 6 11.6953 -1.7613 1.6998 18 7 12.0273 -3.0297 1.8030 19 14 12.9226 -0.5268 1.0222 20 1 12.3085 0.8252 1.0085 21 1 14.1341 -0.5109 1.8809 22 1 13.3010 -0.9131 -0.3608 23 6 7.1873 -2.6065 3.6609 24 6 5.8971 -1.8755 4.0456 25 1 -0.3633 -1.0242 0.0841 26 1 -0.3633 0.5850 0.8449 27 1 -0.3633 0.4393 -0.9291 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.7591 -0.1539 2.1365 33 1 1.5988 -1.7167 1.2996 34 1 3.6176 -1.2926 -0.9236 35 1 5.0362 -1.8637 -0.0128 36 1 3.4826 -2.7202 0.1309 37 1 5.7116 -0.0167 1.1631 38 1 6.4666 0.5548 2.6732 39 1 8.2005 -0.3833 1.2280 40 1 7.2712 -1.8905 1.0417 41 1 8.3603 -0.7993 3.6764 42 1 9.8622 -2.8076 3.5309 43 1 9.2515 -3.1028 1.8852 44 1 12.9095 -3.3240 1.5276 45 1 7.6536 -3.0173 4.5565 46 1 6.9546 -3.4152 2.9683 47 1 6.1147 -1.1263 4.8068 48 1 5.1714 -2.5904 4.4334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573326628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = -81.465862 kcal Electronic energy + Delta-G solvation = -23120.508661 eV Core-core repulsion = 19980.567832 eV Total energy + Delta-G solvation = -3139.940829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29777 -37.77878 -36.74134 -34.04062 -32.93886 -31.97223 -30.62883 -28.06871 -27.39001 -26.80615 -25.05084 -23.53599 -22.73219 -21.51241 -20.07673 -19.42220 -18.33567 -17.20014 -16.31544 -15.88932 -15.35641 -15.12622 -14.56469 -14.32630 -13.96334 -13.86645 -13.60238 -13.43941 -13.06805 -12.86315 -12.74183 -12.48245 -12.32110 -12.22953 -12.05835 -11.80757 -11.60389 -11.35708 -11.21316 -11.00125 -10.88351 -10.79266 -10.70329 -10.66898 -10.60899 -10.44705 -10.11436 -9.72163 -9.44187 -9.24618 -8.97741 -8.38280 -8.31997 -6.02211 -4.04323 2.77656 3.18956 3.28117 3.36258 3.38834 4.43025 4.43993 4.56899 4.69280 4.87470 4.98673 5.06832 5.13528 5.28802 5.32960 5.39490 5.41678 5.44557 5.48925 5.51595 5.58917 5.64829 5.69361 5.73122 5.75369 5.79300 5.81973 5.91158 5.98875 6.00448 6.03562 6.10440 6.22518 6.26668 6.37457 6.40061 6.51792 6.69376 6.95273 6.98216 7.09216 7.62076 7.65137 7.79453 7.97618 8.34462 8.39835 9.02477 9.59693 11.09066 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.003585 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.742169 B = 7808.923830 C = 8502.964307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.095 4.095 5 C -0.113 4.113 6 H 0.094 0.906 7 C -0.144 4.144 8 C 0.518 3.482 9 O -0.553 6.553 10 N -0.605 5.605 11 C 0.101 3.899 12 C -0.119 4.119 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.129 4.129 24 C 0.112 3.888 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.816 6.880 -3.171 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.208 4.208 4 C -0.133 4.133 5 C -0.134 4.134 6 H 0.112 0.888 7 C -0.201 4.201 8 C 0.306 3.694 9 O -0.431 6.431 10 N -0.337 5.337 11 C -0.022 4.022 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.167 4.167 24 C -0.011 4.011 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.053 6.407 -2.824 20.299 hybrid contribution 1.023 0.622 -0.383 1.257 sum -18.030 7.029 -3.207 19.616 Atomic orbital electron populations 1.21825 0.95249 1.01786 1.01521 1.21196 0.95700 0.96347 0.98589 1.21917 1.01247 0.95987 1.01642 1.21479 0.92705 1.01443 0.97630 1.21391 0.97618 1.00853 0.93538 0.88777 1.21796 1.02329 0.99460 0.96546 1.20649 0.81345 0.80489 0.86919 1.90644 1.56222 1.40674 1.55603 1.48186 1.11258 1.46367 1.27934 1.21908 0.92182 0.92629 0.95432 1.21830 0.94503 1.00377 0.99007 1.21185 0.96270 0.97318 0.95116 1.19127 0.89794 0.95422 0.96621 1.21271 0.97872 0.94567 1.41669 0.92551 1.25029 0.98395 0.95063 0.96019 1.69978 1.20699 1.14541 1.48238 0.86595 0.81459 0.81608 0.78680 1.19749 1.21099 1.21088 1.22024 0.94640 0.98854 1.01192 1.21651 0.96116 0.96861 0.86434 0.92649 0.92776 0.92840 0.90771 0.92392 0.92815 0.92736 0.91771 0.90967 0.91309 0.91671 0.92041 0.90248 0.91629 0.89688 0.92298 0.92374 0.96618 0.96651 0.93096 0.91186 0.92149 0.91975 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.10 -0.82 2.79 -90.62 -0.25 -1.08 16 3 C -0.15 -1.15 8.96 37.16 0.33 -0.82 16 4 C -0.09 -0.99 3.57 -26.73 -0.10 -1.08 16 5 C -0.11 -1.26 1.74 -91.77 -0.16 -1.42 16 6 H 0.09 0.93 4.59 -51.93 -0.24 0.69 16 7 C -0.14 -1.51 8.72 37.16 0.32 -1.18 16 8 C 0.52 7.70 6.82 -10.99 -0.07 7.63 16 9 O -0.55 -9.98 15.61 5.55 0.09 -9.90 16 10 N -0.60 -8.89 2.98 -173.03 -0.52 -9.41 16 11 C 0.10 1.35 6.07 -3.93 -0.02 1.33 16 12 C -0.12 -2.00 5.17 -26.83 -0.14 -2.14 16 13 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 14 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 15 C -0.52 -13.80 8.39 -34.44 -0.29 -14.09 16 16 H 0.06 1.45 7.06 -52.48 -0.37 1.08 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 24 C 0.11 1.70 6.42 -3.71 -0.02 1.68 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.59 6.38 -51.93 -0.33 0.26 16 29 H 0.06 0.44 6.47 -51.93 -0.34 0.10 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 34 H 0.07 0.58 6.57 -51.93 -0.34 0.24 16 35 H 0.06 0.74 7.70 -51.93 -0.40 0.34 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.88 5.14 -51.93 -0.27 0.61 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.08 1.32 7.03 -51.93 -0.37 0.96 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -30.53 364.28 -8.74 -39.27 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.90 Total: -1.82 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.61 Total: -13.98 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.22 Total: -35.09 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.53 -8.74 -39.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573326628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.195 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds