Wall clock time and date at job start Tue Mar 31 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47078 * 2 1 4 4 N 1.46501 * 109.46816 * 119.99389 * 2 1 3 5 5 C 1.46499 * 119.99516 * 124.08705 * 4 2 1 6 6 C 1.50700 * 109.47036 * 269.99904 * 5 4 2 7 7 H 1.07997 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99955 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00084 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99944 * 179.72286 * 8 6 5 11 11 H 1.48494 * 109.47340 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46917 * 120.00256 * 10 8 6 13 13 H 1.48500 * 109.47030 * 239.99956 * 10 8 6 14 14 C 1.34775 * 120.00296 * 304.08856 * 4 2 1 15 15 O 1.21277 * 119.99780 * 354.34532 * 14 4 2 16 16 C 1.50699 * 119.99685 * 174.35436 * 14 4 2 17 17 C 1.53001 * 109.46957 * 184.06149 * 16 14 4 18 18 H 1.09001 * 109.47392 * 54.99526 * 17 16 14 19 19 C 1.53009 * 109.47082 * 294.99827 * 17 16 14 20 20 C 1.53001 * 109.47082 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47057 * 59.99636 * 20 19 17 22 22 C 1.52993 * 109.47360 * 299.99957 * 21 20 19 23 23 C 1.52998 * 109.47519 * 60.00093 * 22 21 20 24 24 H 1.08994 * 109.47498 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.46943 * 59.99560 * 23 22 21 26 26 H 1.08998 * 109.47061 * 295.30914 * 1 2 3 27 27 H 1.09000 * 109.46851 * 55.30358 * 1 2 3 28 28 H 1.08989 * 109.47267 * 175.30711 * 1 2 3 29 29 H 1.08993 * 109.46890 * 239.99765 * 2 1 3 30 30 H 1.09003 * 109.47009 * 184.87539 * 3 2 1 31 31 H 1.09000 * 109.46718 * 304.86831 * 3 2 1 32 32 H 1.08995 * 109.47506 * 64.86857 * 3 2 1 33 33 H 1.09005 * 109.47450 * 149.99886 * 5 4 2 34 34 H 1.08999 * 109.47200 * 29.99802 * 5 4 2 35 35 H 0.96992 * 120.00517 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47209 * 304.05287 * 16 14 4 37 37 H 1.09000 * 109.47453 * 64.05950 * 16 14 4 38 38 H 1.09004 * 109.46464 * 299.99654 * 19 17 16 39 39 H 1.08993 * 109.47081 * 59.99730 * 19 17 16 40 40 H 1.08997 * 109.46947 * 299.99822 * 20 19 17 41 41 H 1.08998 * 109.46746 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.46471 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47091 * 60.00274 * 21 20 19 44 44 H 1.09001 * 109.46956 * 299.99855 * 22 21 20 45 45 H 1.09003 * 109.47029 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.47446 * 300.00263 * 25 23 22 47 47 H 1.09002 * 109.47128 * 60.00871 * 25 23 22 48 48 H 1.09000 * 109.47288 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.9328 -1.8273 1.0638 6 6 2.1370 -3.1028 0.9599 7 1 1.0579 -3.0699 0.9892 8 6 2.7865 -4.3118 0.8275 9 7 4.1006 -4.3519 0.7923 10 14 1.8002 -5.8936 0.7066 11 1 0.3505 -5.5796 0.7769 12 1 2.0987 -6.5656 -0.5837 13 1 2.1674 -6.7930 1.8297 14 6 1.6262 -0.2800 2.4186 15 8 0.9527 0.7219 2.5346 16 6 2.0248 -1.0658 3.6411 17 6 1.3716 -0.4487 4.8794 18 1 0.2931 -0.3923 4.7315 19 6 1.9299 0.9583 5.1029 20 6 1.2772 1.5752 6.3416 21 6 1.5800 0.7062 7.5639 22 6 1.0217 -0.7006 7.3404 23 6 1.6743 -1.3176 6.1018 24 1 1.2763 -2.3197 5.9424 25 6 3.1882 -1.3966 6.3089 26 1 -0.3633 0.4393 0.9290 27 1 -0.3633 0.5850 -0.8449 28 1 -0.3633 -1.0241 -0.0841 29 1 1.8933 -0.5138 -0.8899 30 1 3.1266 1.4438 -0.0873 31 1 1.6072 1.9809 -0.8432 32 1 1.7497 1.9306 0.9303 33 1 3.5827 -1.8746 1.9376 34 1 3.5391 -1.7032 0.1664 35 1 4.5575 -5.2024 0.6995 36 1 1.6941 -2.0988 3.5328 37 1 3.1089 -1.0409 3.7516 38 1 3.0083 0.9018 5.2509 39 1 1.7145 1.5771 4.2319 40 1 0.1987 1.6315 6.1940 41 1 1.6752 2.5773 6.5009 42 1 1.1153 1.1460 8.4463 43 1 2.6585 0.6499 7.7115 44 1 -0.0568 -0.6443 7.1929 45 1 1.2371 -1.3196 8.2115 46 1 3.5860 -0.3944 6.4680 47 1 3.4040 -2.0157 7.1797 48 1 3.6532 -1.8366 5.4267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573580815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:18 Heat of formation + Delta-G solvation = -76.338818 kcal Electronic energy + Delta-G solvation = -24087.091877 eV Core-core repulsion = 20947.373374 eV Total energy + Delta-G solvation = -3139.718504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -39.86735 -38.47488 -35.30960 -33.36441 -32.41763 -31.51612 -31.05068 -27.55359 -26.87021 -26.59676 -25.73835 -22.89460 -22.22414 -21.83954 -20.63232 -18.11051 -17.85523 -16.61267 -16.04498 -15.55905 -15.10271 -14.83605 -14.39004 -14.18491 -13.98126 -13.55218 -13.27154 -12.90173 -12.69284 -12.59441 -12.30526 -12.23370 -11.96706 -11.81431 -11.58437 -11.42321 -11.29796 -11.27052 -10.95147 -10.90082 -10.88130 -10.79974 -10.63457 -10.39692 -10.29946 -10.07046 -9.89647 -9.73943 -9.67071 -9.60216 -8.62238 -8.46572 -7.61082 -6.17503 -4.24607 3.21032 3.29954 3.33690 3.52995 4.02136 4.34075 4.90048 4.94456 4.98489 5.15354 5.33411 5.46197 5.48093 5.56432 5.59569 5.66877 5.73673 5.74565 5.83530 5.87718 5.90760 5.96720 6.08111 6.08966 6.14188 6.20948 6.24509 6.28254 6.32144 6.37520 6.40012 6.47556 6.47721 6.50222 6.58642 6.68827 6.81594 6.83136 6.87592 6.90990 6.94910 7.22386 7.66691 7.78987 8.08019 8.46150 8.83294 9.15502 9.43759 10.88995 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.006287 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.336909 B = 4452.835187 C = 5855.014879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 C -0.165 4.165 4 N -0.594 5.594 5 C 0.238 3.762 6 C -0.533 4.533 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.519 3.481 15 O -0.569 6.569 16 C -0.133 4.133 17 C -0.061 4.061 18 H 0.070 0.930 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.088 4.088 24 H 0.068 0.932 25 C -0.152 4.152 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 7.801 8.143 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.325 5.325 5 C 0.118 3.882 6 C -0.572 4.572 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.309 3.691 15 O -0.451 6.451 16 C -0.172 4.172 17 C -0.080 4.080 18 H 0.089 0.911 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.107 4.107 24 H 0.087 0.913 25 C -0.209 4.209 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.073 8.169 8.158 11.946 hybrid contribution -0.306 -1.275 -0.259 1.336 sum -3.379 6.894 7.899 11.015 Atomic orbital electron populations 1.22152 0.95845 1.01669 1.02639 1.20789 0.94046 0.92251 0.88486 1.22199 1.00335 0.97016 1.02746 1.48326 1.46976 1.32714 1.04441 1.19423 0.88282 0.82289 0.98245 1.21543 0.93638 0.91038 1.50982 0.92080 1.24940 0.94859 0.99137 0.94876 1.69928 1.07086 1.26339 1.49689 0.86508 0.80395 0.83222 0.77780 1.19688 1.20903 1.20826 1.20493 0.79272 0.84456 0.84901 1.90463 1.41243 1.26751 1.86668 1.21750 1.02171 1.01229 0.92093 1.20867 1.00249 0.94401 0.92440 0.91148 1.21767 0.99043 0.96602 0.98404 1.21491 1.00738 0.97971 0.95055 1.21578 1.00975 0.95625 0.97599 1.21529 0.99832 0.96042 0.97487 1.21134 0.96026 0.98947 0.94577 0.91313 1.21986 0.95814 1.01598 1.01549 0.90558 0.93129 0.92823 0.90169 0.93395 0.92938 0.90683 0.94480 0.94915 0.92630 0.88158 0.89471 0.92812 0.89581 0.92367 0.92844 0.92932 0.91947 0.92310 0.92539 0.92300 0.93423 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.13 37.16 0.34 -2.60 16 2 C 0.15 2.78 3.27 -67.93 -0.22 2.56 16 3 C -0.16 -2.75 9.24 37.16 0.34 -2.40 16 4 N -0.59 -12.34 2.41 -167.47 -0.40 -12.74 16 5 C 0.24 5.59 4.87 -5.19 -0.03 5.57 16 6 C -0.53 -13.67 8.96 -34.44 -0.31 -13.98 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -24.41 13.29 55.43 0.74 -23.67 16 10 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.52 10.38 6.82 -10.99 -0.07 10.30 16 15 O -0.57 -11.65 10.02 5.56 0.06 -11.59 16 16 C -0.13 -2.39 3.26 -27.88 -0.09 -2.48 16 17 C -0.06 -0.94 1.62 -90.61 -0.15 -1.09 16 18 H 0.07 1.18 8.02 -51.93 -0.42 0.77 16 19 C -0.12 -1.79 4.67 -26.73 -0.12 -1.91 16 20 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 21 C -0.12 -1.36 5.65 -26.73 -0.15 -1.51 16 22 C -0.11 -1.32 5.45 -26.74 -0.15 -1.46 16 23 C -0.09 -1.20 2.72 -90.62 -0.25 -1.44 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.15 -1.99 8.15 37.16 0.30 -1.69 16 26 H 0.08 1.46 5.94 -51.93 -0.31 1.16 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.00 8.14 -51.94 -0.42 0.58 16 29 H 0.08 1.52 7.83 -51.93 -0.41 1.11 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.36 6.18 -51.93 -0.32 1.04 16 33 H 0.04 0.90 6.59 -51.93 -0.34 0.56 16 34 H 0.03 0.82 7.96 -51.93 -0.41 0.40 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.10 1.96 7.68 -51.93 -0.40 1.57 16 37 H 0.09 1.55 6.01 -51.93 -0.31 1.24 16 38 H 0.05 0.77 6.43 -51.93 -0.33 0.44 16 39 H 0.09 1.47 5.81 -51.93 -0.30 1.17 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.89 6.54 -51.93 -0.34 0.55 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -26.55 353.65 -8.78 -35.34 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.67 Total: 4.06 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.81 Total: -12.15 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.33 Total: -36.42 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.06 Total: -11.59 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -26.55 -8.78 -35.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573580815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.002 kcal (2) G-P(sol) polarization free energy of solvation -26.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds