Wall clock time and date at job start Tue Mar 31 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 N 1.46498 * 109.47119 * 119.99691 * 2 1 3 5 5 C 1.46493 * 120.00184 * 300.00058 * 4 2 1 6 6 C 1.50694 * 109.47300 * 269.99671 * 5 4 2 7 7 H 1.07999 * 120.00245 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00229 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00280 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47413 * 90.00460 * 10 8 6 12 12 H 1.48504 * 109.46868 * 210.00307 * 10 8 6 13 13 H 1.48497 * 109.47021 * 330.00024 * 10 8 6 14 14 C 1.34777 * 119.99580 * 119.99482 * 4 2 1 15 15 O 1.21279 * 119.99731 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00198 * 0.02562 * 14 4 2 17 17 C 1.53005 * 109.47098 * 179.97438 * 16 14 4 18 18 H 1.09002 * 109.46935 * 55.00125 * 17 16 14 19 19 C 1.53002 * 109.47197 * 295.00224 * 17 16 14 20 20 C 1.53000 * 109.46806 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46911 * 59.99917 * 20 19 17 22 22 C 1.52997 * 109.47143 * 299.99808 * 21 20 19 23 23 C 1.52992 * 109.47482 * 60.00181 * 22 21 20 24 24 H 1.09002 * 109.47103 * 59.99753 * 23 22 21 25 25 C 1.52997 * 109.47482 * 179.97438 * 23 22 21 26 26 H 1.09004 * 109.46948 * 299.99927 * 1 2 3 27 27 H 1.09004 * 109.47347 * 59.99735 * 1 2 3 28 28 H 1.09003 * 109.47494 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46948 * 240.00073 * 2 1 3 30 30 H 1.09002 * 109.47162 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47010 * 299.99610 * 3 2 1 32 32 H 1.08992 * 109.47533 * 60.00082 * 3 2 1 33 33 H 1.09005 * 109.47579 * 30.00089 * 5 4 2 34 34 H 1.09005 * 109.47211 * 149.99725 * 5 4 2 35 35 H 0.96994 * 120.00483 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47355 * 59.99664 * 16 14 4 37 37 H 1.08993 * 109.47242 * 299.99195 * 16 14 4 38 38 H 1.09001 * 109.47142 * 59.99766 * 19 17 16 39 39 H 1.09002 * 109.46838 * 299.99316 * 19 17 16 40 40 H 1.08992 * 109.47399 * 299.99952 * 20 19 17 41 41 H 1.09004 * 109.46724 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.46930 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.47067 * 59.99825 * 21 20 19 44 44 H 1.09002 * 109.47153 * 299.99965 * 22 21 20 45 45 H 1.09001 * 109.46832 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.47153 * 59.99783 * 25 23 22 47 47 H 1.09001 * 109.46832 * 299.99974 * 25 23 22 48 48 H 1.09004 * 109.47261 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6645 -0.1900 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5428 1.0363 2.3454 8 6 2.5812 1.4108 4.2139 9 7 1.5585 1.1258 4.9902 10 14 3.8684 2.6409 4.7791 11 1 3.4752 4.0048 4.3428 12 1 3.9704 2.6053 6.2602 13 1 5.1830 2.2904 4.1839 14 6 2.7931 -1.7864 1.0725 15 8 3.1978 -2.3578 2.0627 16 6 3.1575 -2.3010 -0.2962 17 6 4.0375 -3.5448 -0.1558 18 1 3.5279 -4.2823 0.4643 19 6 5.3657 -3.1587 0.4983 20 6 6.2453 -4.4026 0.6393 21 6 6.5123 -4.9978 -0.7447 22 6 5.1842 -5.3838 -1.3988 23 6 4.3045 -4.1401 -1.5397 24 1 4.8143 -3.4029 -2.1601 25 6 2.9766 -4.5260 -2.1944 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.6904 0.2975 2.4844 34 1 1.6238 -1.0226 3.2291 35 1 1.4729 1.5539 5.8563 36 1 3.7027 -1.5302 -0.8410 37 1 2.2494 -2.5578 -0.8415 38 1 5.1754 -2.7350 1.4844 39 1 5.8753 -2.4213 -0.1219 40 1 5.7356 -5.1397 1.2595 41 1 7.1917 -4.1274 1.1049 42 1 7.1394 -5.8837 -0.6444 43 1 7.0221 -4.2606 -1.3651 44 1 4.6744 -6.1210 -0.7784 45 1 5.3745 -5.8083 -2.3846 46 1 2.4666 -5.2634 -1.5744 47 1 3.1673 -4.9498 -3.1804 48 1 2.3497 -3.6399 -2.2944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573580816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:29 Heat of formation + Delta-G solvation = -77.235607 kcal Electronic energy + Delta-G solvation = -23798.934720 eV Core-core repulsion = 20659.177329 eV Total energy + Delta-G solvation = -3139.757391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.76290 -38.23935 -35.86026 -33.08956 -32.71222 -31.75039 -30.76185 -28.34486 -26.84340 -26.62050 -25.56187 -22.95221 -21.81239 -21.18550 -20.65970 -19.56622 -17.82842 -16.57132 -16.40666 -15.25909 -14.83521 -14.80259 -14.36759 -14.32510 -14.04608 -13.63859 -13.48462 -13.36747 -12.80540 -12.55274 -12.31945 -12.20046 -11.89733 -11.73533 -11.63303 -11.52546 -11.37761 -11.36064 -11.11624 -10.87698 -10.85294 -10.79988 -10.68722 -10.54035 -10.34336 -10.21770 -9.99694 -9.81335 -9.76891 -9.49099 -8.64365 -8.38221 -7.55638 -5.99424 -4.02365 3.31583 3.38689 3.42280 3.55409 4.00469 4.48065 4.72545 4.78226 4.83440 5.14430 5.19669 5.28492 5.32490 5.36080 5.43562 5.49139 5.58530 5.60459 5.65427 5.67127 5.72520 5.77760 5.86303 5.86609 5.93103 6.02357 6.04048 6.09356 6.17074 6.19723 6.28670 6.29975 6.37793 6.39284 6.41513 6.47718 6.63414 6.74601 6.84599 6.99368 7.18993 7.53362 7.66001 7.98156 8.31049 8.55360 8.97633 9.22153 9.61841 11.08666 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.005080 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.671410 B = 5510.328920 C = 6464.204785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.157 4.157 4 N -0.595 5.595 5 C 0.246 3.754 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.504 3.496 15 O -0.540 6.540 16 C -0.140 4.140 17 C -0.061 4.061 18 H 0.075 0.925 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.088 4.088 24 H 0.067 0.933 25 C -0.150 4.150 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -8.205 -15.872 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.127 3.873 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.291 3.709 15 O -0.418 6.418 16 C -0.180 4.180 17 C -0.080 4.080 18 H 0.094 0.906 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.106 4.106 24 H 0.086 0.914 25 C -0.207 4.207 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.116 -8.451 -15.148 17.624 hybrid contribution 0.630 0.888 0.340 1.141 sum 3.746 -7.563 -14.808 17.045 Atomic orbital electron populations 1.22161 0.95776 1.01694 1.02356 1.20970 0.93946 0.94060 0.88140 1.22137 1.01305 0.95834 1.02195 1.48342 1.49384 1.26592 1.08406 1.19199 0.95746 0.94902 0.77487 1.21439 1.08832 1.23204 1.01973 0.92470 1.24921 0.95719 0.97144 0.96397 1.69929 1.29589 1.43359 1.10699 0.86573 0.82102 0.81304 0.77900 1.20744 1.21205 1.19979 1.20382 0.78957 0.80768 0.90766 1.90620 1.53072 1.58178 1.39897 1.21856 1.00922 0.98765 0.96457 1.20886 0.95923 0.96005 0.95211 0.90624 1.21715 0.94344 0.96878 1.02897 1.21501 0.99558 0.98041 0.96311 1.21551 0.96935 1.00124 0.97046 1.21557 0.95851 0.97414 1.00074 1.21178 0.95778 0.97173 0.96490 0.91448 1.21912 0.97325 1.01486 1.00018 0.91363 0.92384 0.92991 0.90764 0.92816 0.93394 0.90126 0.95015 0.94176 0.92870 0.89893 0.89637 0.89222 0.93067 0.92101 0.92486 0.92614 0.92343 0.92075 0.92489 0.92711 0.93089 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.17 37.16 0.34 -2.05 16 2 C 0.13 2.18 3.17 -67.93 -0.22 1.97 16 3 C -0.16 -2.60 8.47 37.16 0.31 -2.29 16 4 N -0.60 -12.43 2.39 -167.47 -0.40 -12.83 16 5 C 0.25 6.35 4.59 -5.20 -0.02 6.32 16 6 C -0.52 -14.33 7.83 -34.44 -0.27 -14.60 16 7 H 0.06 1.60 7.63 -52.49 -0.40 1.20 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.50 10.33 7.39 -10.99 -0.08 10.25 16 15 O -0.54 -13.24 13.54 5.56 0.08 -13.17 16 16 C -0.14 -2.08 3.27 -27.88 -0.09 -2.17 16 17 C -0.06 -0.86 1.36 -90.62 -0.12 -0.99 16 18 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 19 C -0.12 -1.84 4.94 -26.73 -0.13 -1.97 16 20 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.11 -1.15 5.20 -26.74 -0.14 -1.29 16 23 C -0.09 -0.97 2.25 -90.63 -0.20 -1.17 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 C -0.15 -1.47 8.85 37.16 0.33 -1.14 16 26 H 0.07 1.15 6.66 -51.93 -0.35 0.81 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.01 5.77 -51.93 -0.30 0.71 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 33 H 0.03 0.83 6.43 -51.93 -0.33 0.50 16 34 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.14 7.79 -51.93 -0.40 0.74 16 37 H 0.09 1.10 5.82 -51.93 -0.30 0.80 16 38 H 0.09 1.72 5.95 -51.93 -0.31 1.41 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.55 6.32 -51.93 -0.33 0.23 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -31.01 360.85 -8.82 -39.83 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.94 Total: 0.34 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.71 Total: -10.62 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.34 Total: -38.71 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.01 -8.82 -39.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573580816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.408 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds