Wall clock time and date at job start Tue Mar 31 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 N 1.46506 * 109.46656 * 119.99642 * 2 1 3 5 5 C 1.46498 * 120.00239 * 299.72110 * 4 2 1 6 6 C 1.50702 * 109.47034 * 90.00162 * 5 4 2 7 7 H 1.08002 * 119.99777 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00392 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99817 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00435 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46950 * 89.99471 * 10 8 6 12 12 H 1.48499 * 109.47296 * 209.99467 * 10 8 6 13 13 H 1.48497 * 109.47067 * 330.00242 * 10 8 6 14 14 C 1.34777 * 119.99873 * 120.00305 * 4 2 1 15 15 O 1.21283 * 120.00222 * 179.97438 * 14 4 2 16 16 C 1.50699 * 119.99772 * 359.97438 * 14 4 2 17 17 C 1.53004 * 109.46843 * 180.02562 * 16 14 4 18 18 H 1.09000 * 109.46819 * 304.99871 * 17 16 14 19 19 C 1.52995 * 109.47249 * 65.00091 * 17 16 14 20 20 C 1.53004 * 109.46907 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47059 * 299.99674 * 20 19 17 22 22 C 1.52995 * 109.46995 * 60.00379 * 21 20 19 23 23 C 1.53003 * 109.47012 * 185.00347 * 17 16 14 24 24 H 1.09000 * 109.46940 * 299.99450 * 23 17 16 25 25 C 1.53001 * 109.47447 * 59.99476 * 23 17 16 26 26 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 27 27 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 28 28 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 30 30 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 32 32 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 33 33 H 1.08993 * 109.47575 * 210.00600 * 5 4 2 34 34 H 1.09001 * 109.46870 * 330.00556 * 5 4 2 35 35 H 0.96996 * 120.00179 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47685 * 300.00183 * 16 14 4 37 37 H 1.08997 * 109.47517 * 60.00530 * 16 14 4 38 38 H 1.09001 * 109.46802 * 299.99684 * 19 17 16 39 39 H 1.09000 * 109.47390 * 60.00129 * 19 17 16 40 40 H 1.09000 * 109.47124 * 59.99802 * 20 19 17 41 41 H 1.09002 * 109.46833 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.47241 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47257 * 300.00046 * 21 20 19 44 44 H 1.09000 * 109.47390 * 59.99748 * 22 21 20 45 45 H 1.09002 * 109.47263 * 179.97438 * 22 21 20 46 46 H 1.09006 * 109.46667 * 60.00115 * 25 23 17 47 47 H 1.08997 * 109.46730 * 179.97438 * 25 23 17 48 48 H 1.08994 * 109.47099 * 299.99958 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.6693 -0.1865 2.5268 6 6 0.3863 -0.8293 2.9870 7 1 -0.1184 -1.5424 2.3520 8 6 -0.1432 -0.5072 4.2186 9 7 0.4717 0.3608 4.9920 10 14 -1.7331 -1.3045 4.7893 11 1 -1.4225 -2.5554 5.5270 12 1 -2.4621 -0.3701 5.6842 13 1 -2.5785 -1.6221 3.6105 14 6 2.7931 -1.7864 1.0727 15 8 3.1977 -2.3579 2.0630 16 6 3.1567 -2.3016 -0.2960 17 6 4.0360 -3.5459 -0.1555 18 1 4.9011 -3.3112 0.4647 19 6 3.2291 -4.6692 0.4986 20 6 4.1086 -5.9133 0.6397 21 6 4.5808 -6.3636 -0.7442 22 6 5.3876 -5.2403 -1.3983 23 6 4.5077 -3.9960 -1.5396 24 1 3.6425 -4.2306 -2.1598 25 6 5.3144 -2.8725 -2.1938 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.4683 -0.4276 3.2278 34 1 1.5385 0.8948 2.4829 35 1 0.0995 0.5872 5.8586 36 1 2.2483 -2.5587 -0.8407 37 1 3.7016 -1.5310 -0.8413 38 1 2.8932 -4.3485 1.4847 39 1 2.3640 -4.9039 -0.1215 40 1 4.9735 -5.6784 1.2600 41 1 3.5339 -6.7135 1.1061 42 1 5.2069 -7.2502 -0.6438 43 1 3.7158 -6.5986 -1.3646 44 1 6.2525 -5.0054 -0.7780 45 1 5.7243 -5.5613 -2.3841 46 1 6.1796 -2.6380 -1.5736 47 1 5.6508 -3.1935 -3.1797 48 1 4.6881 -1.9862 -2.2939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573580817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:33 Heat of formation + Delta-G solvation = -77.213615 kcal Electronic energy + Delta-G solvation = -23797.218304 eV Core-core repulsion = 20657.461866 eV Total energy + Delta-G solvation = -3139.756438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.76290 -38.23817 -35.86032 -33.09049 -32.71222 -31.74926 -30.76196 -28.34538 -26.84114 -26.62244 -25.56192 -22.95172 -21.81298 -21.18544 -20.66019 -19.56782 -17.82866 -16.57205 -16.40609 -15.25881 -14.83595 -14.80419 -14.36774 -14.32430 -14.04712 -13.63892 -13.48460 -13.36848 -12.80581 -12.55284 -12.31908 -12.20111 -11.89777 -11.73522 -11.63237 -11.52243 -11.37902 -11.36061 -11.12391 -10.87568 -10.84132 -10.78941 -10.68746 -10.56416 -10.33581 -10.21928 -9.99670 -9.81365 -9.76921 -9.49279 -8.64478 -8.38034 -7.55687 -5.99437 -4.02385 3.32946 3.39200 3.40580 3.55239 4.00295 4.48072 4.72466 4.78104 4.83381 5.14320 5.19592 5.28528 5.32482 5.36063 5.43482 5.49063 5.58469 5.60493 5.65379 5.66982 5.72536 5.77680 5.86198 5.86530 5.93010 6.02296 6.04126 6.09309 6.16998 6.19829 6.28752 6.29886 6.37712 6.39393 6.41483 6.47601 6.63472 6.74497 6.84339 6.99755 7.19067 7.53314 7.65919 7.98132 8.31039 8.55316 8.97606 9.22017 9.61826 11.08663 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.005073 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.162018 B = 5517.683315 C = 6468.773633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 C -0.162 4.162 4 N -0.595 5.595 5 C 0.246 3.754 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.504 3.496 15 O -0.540 6.540 16 C -0.140 4.140 17 C -0.061 4.061 18 H 0.075 0.925 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.088 4.088 24 H 0.067 0.933 25 C -0.150 4.150 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -5.588 -15.883 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.029 3.971 3 C -0.220 4.220 4 N -0.327 5.327 5 C 0.127 3.873 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.200 1.200 14 C 0.291 3.709 15 O -0.418 6.418 16 C -0.180 4.180 17 C -0.080 4.080 18 H 0.094 0.906 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.106 4.106 24 H 0.086 0.914 25 C -0.207 4.207 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.895 -5.775 -15.164 17.631 hybrid contribution -1.034 -0.308 0.350 1.135 sum 5.861 -6.083 -14.814 17.053 Atomic orbital electron populations 1.22137 0.94850 1.02278 1.02195 1.20969 0.95023 0.92988 0.88129 1.22158 1.00808 0.96661 1.02365 1.48344 1.48763 1.27198 1.08410 1.19201 0.96285 0.94379 0.77478 1.21438 1.07348 1.24673 1.01988 0.92468 1.24921 0.97579 0.95264 0.96423 1.69934 1.39483 1.33449 1.10716 0.86572 0.83394 0.79256 0.78639 1.20670 1.21270 1.19985 1.20384 0.78972 0.80760 0.90767 1.90622 1.54444 1.56825 1.39894 1.21858 1.00999 0.98694 0.96456 1.20886 0.98305 0.93623 0.95212 0.90619 1.21714 0.97264 0.93965 1.02891 1.21501 0.99828 0.97775 0.96308 1.21548 0.99541 0.97518 0.97042 1.21568 0.98283 0.94975 1.00071 1.21191 0.98102 0.94842 0.96487 0.91439 1.21912 1.00223 0.98585 1.00023 0.90122 0.93393 0.92828 0.90768 0.92996 0.92388 0.91343 0.94180 0.95003 0.92874 0.89894 0.89633 0.89229 0.93063 0.92106 0.92486 0.92615 0.92342 0.92073 0.92490 0.92709 0.93093 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.48 37.16 0.32 -2.29 16 2 C 0.13 2.18 3.17 -67.93 -0.22 1.97 16 3 C -0.16 -2.39 9.17 37.16 0.34 -2.05 16 4 N -0.60 -12.43 2.39 -167.47 -0.40 -12.83 16 5 C 0.25 6.35 4.61 -5.19 -0.02 6.32 16 6 C -0.52 -14.33 7.83 -34.44 -0.27 -14.60 16 7 H 0.06 1.60 7.63 -52.49 -0.40 1.20 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.50 10.32 7.39 -10.99 -0.08 10.24 16 15 O -0.54 -13.24 13.54 5.55 0.08 -13.16 16 16 C -0.14 -2.08 3.27 -27.88 -0.09 -2.17 16 17 C -0.06 -0.86 1.36 -90.62 -0.12 -0.99 16 18 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 19 C -0.12 -1.84 4.94 -26.73 -0.13 -1.97 16 20 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.11 -1.15 5.21 -26.71 -0.14 -1.29 16 23 C -0.09 -0.96 2.25 -90.59 -0.20 -1.17 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 C -0.15 -1.47 8.85 37.16 0.33 -1.14 16 26 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.01 5.77 -51.93 -0.30 0.71 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.16 6.65 -51.93 -0.35 0.81 16 33 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 34 H 0.03 0.84 6.41 -51.93 -0.33 0.50 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.14 7.79 -51.93 -0.40 0.73 16 37 H 0.09 1.10 5.82 -51.93 -0.30 0.80 16 38 H 0.09 1.72 5.95 -51.93 -0.31 1.41 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.55 6.32 -51.93 -0.33 0.23 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -31.00 360.83 -8.81 -39.82 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.93 Total: 0.36 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -0.71 Total: -10.63 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.34 Total: -38.71 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.00 -8.81 -39.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573580817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.397 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds