Wall clock time and date at job start Tue Mar 31 2020 05:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 O 1.42898 * 109.47002 * 120.00149 * 2 1 3 5 5 C 1.42901 * 114.00258 * 89.99910 * 4 2 1 6 6 C 1.53785 * 113.69063 * 110.93650 * 5 4 2 7 7 C 1.53779 * 87.08093 * 139.99216 * 6 5 4 8 8 N 1.46900 * 113.69049 * 220.00567 * 7 6 5 9 9 C 1.46850 * 110.99840 * 36.74623 * 8 7 6 10 10 C 1.53040 * 109.52260 * 174.16087 * 9 8 7 11 11 C 1.53120 * 109.27740 * 59.17818 * 10 9 8 12 12 C 1.52998 * 109.52073 * 182.43950 * 11 10 9 13 13 C 1.50697 * 109.47522 * 294.68516 * 12 11 10 14 14 H 1.08001 * 119.99781 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00419 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99583 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00268 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47015 * 59.99895 * 17 15 13 19 19 H 1.48503 * 109.47179 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46955 * 300.00041 * 17 15 13 21 21 C 1.53117 * 109.16172 * 302.34489 * 11 10 9 22 22 C 1.46848 * 111.00021 * 272.53648 * 8 7 6 23 23 C 1.53781 * 113.61413 * 208.47320 * 5 4 2 24 24 H 1.09002 * 109.46880 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47076 * 300.00302 * 1 2 3 26 26 H 1.09005 * 109.46828 * 60.00139 * 1 2 3 27 27 H 1.09000 * 109.47076 * 239.99698 * 2 1 3 28 28 H 1.09004 * 109.47130 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47120 * 299.99682 * 3 2 1 30 30 H 1.09000 * 109.47357 * 59.99870 * 3 2 1 31 31 H 1.09002 * 112.84974 * 339.66626 * 5 4 2 32 32 H 1.09003 * 113.60734 * 254.54335 * 6 5 4 33 33 H 1.08996 * 113.61146 * 25.43833 * 6 5 4 34 34 H 1.09003 * 113.61186 * 89.11185 * 7 6 5 35 35 H 1.08999 * 109.45939 * 294.17430 * 9 8 7 36 36 H 1.09002 * 109.46188 * 54.14416 * 9 8 7 37 37 H 1.09001 * 109.49844 * 299.23941 * 10 9 8 38 38 H 1.09000 * 109.50128 * 179.11881 * 10 9 8 39 39 H 1.09001 * 109.57133 * 62.28446 * 11 10 9 40 40 H 1.08999 * 109.46810 * 54.68408 * 12 11 10 41 41 H 1.08997 * 109.46825 * 174.68269 * 12 11 10 42 42 H 0.97008 * 119.99824 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.50562 * 297.71699 * 21 11 10 44 44 H 1.08997 * 109.50347 * 177.59101 * 21 11 10 45 45 H 1.09003 * 109.46279 * 305.85635 * 22 8 7 46 46 H 1.08998 * 109.46096 * 65.83304 * 22 8 7 47 47 H 1.09005 * 113.61302 * 334.47944 * 23 5 4 48 48 H 1.08996 * 113.61527 * 105.30108 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0782 0.9886 6 6 3.6771 -2.5058 1.0096 7 6 3.2284 -3.7343 1.8186 8 7 4.1491 -4.0936 2.9055 9 6 4.7169 -2.8933 3.5327 10 6 5.5534 -3.2986 4.7484 11 6 6.6735 -4.2412 4.2997 12 6 7.4764 -4.6981 5.5194 13 6 8.1819 -3.5141 6.1288 14 1 8.0693 -2.5338 5.6898 15 6 8.9720 -3.6825 7.2461 16 7 9.1095 -4.8763 7.7803 17 14 9.8471 -2.2149 8.0010 18 1 8.8446 -1.2026 8.4197 19 1 10.6262 -2.6585 9.1849 20 1 10.7655 -1.6171 6.9989 21 6 6.0575 -5.4598 3.6068 22 6 5.2064 -4.9919 2.4242 23 6 2.0274 -2.8927 2.2815 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6415 -2.4786 0.1425 32 1 4.0741 -2.7526 0.0249 33 1 4.3204 -1.8261 1.5683 34 1 2.9511 -4.5873 1.1993 35 1 5.3494 -2.3726 2.8138 36 1 3.9097 -2.2334 3.8508 37 1 4.9184 -3.8072 5.4738 38 1 5.9874 -2.4088 5.2044 39 1 7.3320 -3.7208 3.6043 40 1 6.8020 -5.1371 6.2546 41 1 8.2124 -5.4411 5.2123 42 1 9.6651 -4.9948 8.5666 43 1 5.4305 -6.0024 4.3143 44 1 6.8517 -6.1140 3.2472 45 1 4.7548 -5.8562 1.9372 46 1 5.8368 -4.4613 1.7106 47 1 2.2198 -2.3189 3.1881 48 1 1.0921 -3.4508 2.3244 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574316029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:15 Heat of formation + Delta-G solvation = -43.861409 kcal Electronic energy + Delta-G solvation = -22808.013674 eV Core-core repulsion = 19669.703497 eV Total energy + Delta-G solvation = -3138.310178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28524 -38.29089 -36.50026 -33.62765 -32.42149 -31.47672 -30.31891 -27.68183 -27.49853 -25.83578 -24.49387 -22.93124 -22.71061 -21.50069 -20.83819 -19.29038 -18.48210 -17.45347 -16.20042 -15.90768 -15.46060 -15.17934 -14.64376 -14.39669 -14.24508 -13.80499 -13.52521 -13.36539 -13.11564 -12.74022 -12.55679 -12.47899 -12.31653 -12.22171 -11.88087 -11.73723 -11.59838 -11.23264 -11.17963 -10.87340 -10.81957 -10.76552 -10.73692 -10.49933 -10.39522 -10.20354 -9.87869 -9.55715 -9.45788 -8.98348 -8.83125 -8.28096 -7.95920 -5.93202 -3.94499 3.36940 3.41268 3.43763 3.46083 4.14801 4.46782 4.51142 4.54409 4.65295 4.72638 4.80718 4.86864 4.92561 5.13688 5.28831 5.36830 5.41758 5.43457 5.49276 5.49381 5.55164 5.62917 5.65028 5.74578 5.79659 5.86177 5.90923 5.91368 5.95586 6.00599 6.04685 6.19295 6.22174 6.36042 6.51315 6.65683 6.74136 7.04520 7.16765 7.18003 7.25868 7.41772 7.47215 7.75164 7.92465 8.07924 8.51193 9.11966 9.68711 11.18149 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.003328 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.482068 B = 8410.927353 C = 9322.849460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.366 6.366 5 C 0.065 3.935 6 C -0.196 4.196 7 C 0.067 3.933 8 N -0.521 5.521 9 C 0.052 3.948 10 C -0.100 4.100 11 C -0.081 4.081 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.112 4.112 22 C 0.060 3.940 23 C -0.127 4.127 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.260 0.740 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.096 0.904 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 6.131 -17.471 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.021 3.979 3 C -0.208 4.208 4 O -0.285 6.285 5 C 0.007 3.993 6 C -0.236 4.236 7 C -0.043 4.043 8 N -0.244 5.244 9 C -0.075 4.075 10 C -0.138 4.138 11 C -0.100 4.100 12 C -0.008 4.008 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.150 4.150 22 C -0.067 4.067 23 C -0.165 4.165 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.115 0.885 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.535 5.868 -16.777 24.276 hybrid contribution 0.943 1.066 -0.441 1.490 sum -15.593 6.935 -17.219 24.243 Atomic orbital electron populations 1.22325 0.96163 1.02258 1.02464 1.22101 0.93448 0.93915 0.88403 1.21864 1.01930 0.94601 1.02373 1.88017 1.85784 1.19715 1.34981 1.23556 0.95995 0.81187 0.98582 1.24304 0.97760 1.00186 1.01326 1.22890 0.94274 0.95052 0.92082 1.61915 1.18252 1.16521 1.27725 1.22310 0.97454 0.91021 0.96686 1.21560 0.96200 1.00428 0.95581 1.21229 0.95753 0.94208 0.98783 1.19108 0.94227 0.96277 0.91238 1.21227 1.27997 0.94637 1.11378 0.92779 1.25015 0.96813 0.95539 0.97129 1.69960 1.39744 1.21531 1.22411 0.86717 0.79803 0.83153 0.78674 1.20263 1.21386 1.20370 1.21698 0.97939 0.98871 0.96500 1.22076 0.92238 0.95423 0.96975 1.23355 0.98281 0.96772 0.98058 0.92558 0.91746 0.91890 0.92460 0.91950 0.91487 0.91752 0.89948 0.91837 0.88196 0.88241 0.94976 0.91279 0.91916 0.90965 0.93138 0.96526 0.96834 0.93075 0.91616 0.92220 0.91782 0.95409 0.88520 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.53 37.16 0.35 -0.95 16 2 C 0.08 0.70 3.22 -26.73 -0.09 0.61 16 3 C -0.15 -1.20 9.56 37.16 0.36 -0.84 16 4 O -0.37 -4.23 10.00 -35.23 -0.35 -4.59 16 5 C 0.07 0.68 4.11 -25.92 -0.11 0.57 16 6 C -0.20 -2.24 7.17 -25.92 -0.19 -2.43 16 7 C 0.07 0.79 3.85 -66.90 -0.26 0.53 16 8 N -0.52 -7.67 4.78 -225.71 -1.08 -8.74 16 9 C 0.05 0.84 4.30 -3.83 -0.02 0.82 16 10 C -0.10 -1.93 5.15 -26.65 -0.14 -2.07 16 11 C -0.08 -1.69 2.20 -90.50 -0.20 -1.89 16 12 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 13 C -0.51 -14.54 8.44 -34.44 -0.29 -14.83 16 14 H 0.05 1.49 7.08 -52.49 -0.37 1.11 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 17 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.11 -1.98 5.38 -26.65 -0.14 -2.13 16 22 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 23 C -0.13 -1.42 7.42 -25.92 -0.19 -1.61 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 7.74 -51.93 -0.40 0.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.71 7.80 -51.93 -0.40 0.31 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.33 5.60 -51.93 -0.29 1.04 16 34 H 0.10 1.05 8.03 -51.93 -0.42 0.63 16 35 H 0.03 0.52 6.40 -51.93 -0.33 0.19 16 36 H 0.07 1.05 6.18 -51.93 -0.32 0.73 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.49 7.05 -51.93 -0.37 1.12 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 46 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 1.24 6.31 -51.93 -0.33 0.92 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -30.21 365.30 -10.49 -40.69 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -9.13 Total: -2.01 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -1.15 Total: -21.20 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.34 Total: -35.31 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.35 Total: -4.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.21 -10.49 -40.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574316029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.167 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds