Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47167 * 2 1 4 4 C 1.42903 * 113.99783 * 180.02562 * 3 2 1 5 5 H 1.08991 * 112.87927 * 18.69146 * 4 3 2 6 6 C 1.53915 * 113.65078 * 247.25360 * 4 3 2 7 7 C 1.53918 * 87.22700 * 270.37776 * 6 4 3 8 8 H 1.09001 * 113.73639 * 89.64135 * 7 6 4 9 9 N 1.46908 * 113.65026 * 220.64915 * 7 6 4 10 10 C 1.46894 * 110.99837 * 252.26161 * 9 7 6 11 11 H 1.09002 * 109.47104 * 324.99694 * 10 9 7 12 12 C 1.52997 * 109.47515 * 84.99962 * 10 9 7 13 13 C 1.52999 * 109.46927 * 205.00322 * 10 9 7 14 14 C 1.50695 * 109.47581 * 64.99671 * 13 10 9 15 15 H 1.08002 * 119.99958 * 359.97438 * 14 13 10 16 16 C 1.37879 * 120.00273 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99634 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00158 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46797 * 60.00097 * 18 16 14 20 20 H 1.48494 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47033 * 300.00368 * 18 16 14 22 22 C 1.53022 * 86.85132 * 335.13777 * 7 6 4 23 23 C 1.53562 * 115.12678 * 268.16474 * 22 7 6 24 24 C 1.55060 * 103.98374 * 206.87701 * 23 22 7 25 25 C 1.54950 * 102.85983 * 37.29922 * 24 23 22 26 26 C 1.53169 * 115.37070 * 142.15998 * 22 7 6 27 27 H 1.09000 * 109.47164 * 299.99854 * 1 2 3 28 28 H 1.08995 * 109.47179 * 60.00154 * 1 2 3 29 29 H 1.09001 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47164 * 240.00146 * 2 1 3 31 31 H 1.09000 * 109.47608 * 119.99923 * 2 1 3 32 32 H 1.09004 * 113.59378 * 155.78490 * 6 4 3 33 33 H 1.09006 * 113.59294 * 24.96298 * 6 4 3 34 34 H 1.00898 * 110.99816 * 128.30242 * 9 7 6 35 35 H 1.09002 * 109.47153 * 59.99762 * 12 10 9 36 36 H 1.09001 * 109.46832 * 299.99953 * 12 10 9 37 37 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.47565 * 185.00149 * 13 10 9 39 39 H 1.09000 * 109.46738 * 304.99630 * 13 10 9 40 40 H 0.97001 * 119.99767 * 179.97438 * 17 16 14 41 41 H 1.08995 * 110.52882 * 325.50069 * 23 22 7 42 42 H 1.08996 * 110.52765 * 88.25235 * 23 22 7 43 43 H 1.09001 * 110.73569 * 278.95252 * 24 23 22 44 44 H 1.09006 * 110.88999 * 155.71285 * 24 23 22 45 45 H 1.09009 * 110.48008 * 203.76512 * 25 24 23 46 46 H 1.09003 * 110.59206 * 81.19034 * 25 24 23 47 47 H 1.08994 * 110.09332 * 248.84892 * 26 22 7 48 48 H 1.09002 * 110.09463 * 10.38497 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9282 0.5453 -0.3227 6 6 4.0039 2.0520 1.2995 7 6 3.8547 3.4377 0.6462 8 1 2.8872 3.9060 0.8269 9 7 4.9840 4.3390 0.9116 10 6 4.6005 5.4007 1.8516 11 1 3.5626 5.6839 1.6761 12 6 4.7546 4.8918 3.2862 13 6 5.5036 6.6178 1.6424 14 6 5.2615 7.1932 0.2708 15 1 4.5363 6.7362 -0.3862 16 6 5.9666 8.3024 -0.1458 17 7 6.8507 8.8580 0.6537 18 14 5.6670 9.0153 -1.8463 19 1 4.2455 9.4276 -1.9667 20 1 6.5444 10.1959 -2.0497 21 1 5.9733 7.9885 -2.8744 22 6 3.9466 2.7188 -0.7015 23 6 5.3626 2.6058 -1.2850 24 6 5.1314 2.5211 -2.8159 25 6 3.9424 3.4893 -3.0392 26 6 3.0398 3.2733 -1.8044 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.0392 1.7682 1.4889 33 1 3.3592 1.9067 2.1663 34 1 5.3450 4.7286 0.0537 35 1 5.7924 4.6085 3.4618 36 1 4.1111 4.0247 3.4352 37 1 4.4704 5.6797 3.9838 38 1 5.2788 7.3712 2.3973 39 1 6.5471 6.3153 1.7305 40 1 7.3470 9.6382 0.3605 41 1 5.9504 3.4891 -1.0356 42 1 5.8545 1.7033 -0.9223 43 1 4.8633 1.5064 -3.1102 44 1 6.0123 2.8595 -3.3614 45 1 3.4067 3.2312 -3.9529 46 1 4.2910 4.5213 -3.0810 47 1 2.2521 2.5569 -2.0370 48 1 2.6027 4.2206 -1.4887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579665348.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -48.679383 kcal Electronic energy + Delta-G solvation = -23799.790159 eV Core-core repulsion = 20661.271058 eV Total energy + Delta-G solvation = -3138.519101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50138 -37.21246 -35.96535 -34.15338 -32.38690 -30.99594 -28.96000 -28.53252 -27.37675 -26.54447 -23.62113 -22.97889 -22.55670 -21.40599 -20.41226 -19.22153 -18.09018 -16.63663 -16.30328 -15.78307 -15.64724 -15.34025 -14.69924 -14.42990 -14.05889 -13.62871 -13.33045 -13.17658 -12.78658 -12.63518 -12.53137 -12.17978 -11.89987 -11.68309 -11.50271 -11.37116 -11.25778 -11.17264 -10.91505 -10.84093 -10.80137 -10.68770 -10.61391 -10.40970 -10.33451 -10.23713 -9.91874 -9.76657 -9.23436 -9.07309 -8.99373 -8.36194 -7.57502 -5.99666 -4.02370 3.32379 3.37418 3.39478 3.55535 4.45528 4.66773 4.70705 4.75039 4.90698 5.05607 5.10040 5.11729 5.21273 5.26812 5.33766 5.40012 5.42495 5.50723 5.69483 5.74495 5.75929 5.84506 5.90862 5.96215 5.97617 6.06415 6.10532 6.14424 6.18428 6.27987 6.32745 6.34379 6.44949 6.52909 6.59284 6.60099 6.67134 6.71672 7.00980 7.03648 7.33860 7.61670 7.68803 8.00940 8.16961 8.35935 8.43187 9.03882 9.61576 11.11261 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017495 B = 0.005211 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.040051 B = 5372.362104 C = 6231.349985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.363 6.363 4 C 0.074 3.926 5 H 0.069 0.931 6 C -0.143 4.143 7 C 0.084 3.916 8 H 0.069 0.931 9 N -0.669 5.669 10 C 0.087 3.913 11 H 0.028 0.972 12 C -0.133 4.133 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.051 0.949 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.083 4.083 23 C -0.097 4.097 24 C -0.124 4.124 25 C -0.127 4.127 26 C -0.106 4.106 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.356 0.644 35 H 0.053 0.947 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.019 0.981 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 -17.666 -3.212 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.282 6.282 4 C 0.015 3.985 5 H 0.087 0.913 6 C -0.181 4.181 7 C -0.027 4.027 8 H 0.086 0.914 9 N -0.305 5.305 10 C -0.023 4.023 11 H 0.046 0.954 12 C -0.191 4.191 13 C -0.017 4.017 14 C -0.560 4.560 15 H 0.069 0.931 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.084 4.084 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.165 4.165 26 C -0.143 4.143 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.180 0.820 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.467 -17.724 -2.720 19.425 hybrid contribution -0.596 0.831 -1.433 1.760 sum -8.063 -16.893 -4.153 19.174 Atomic orbital electron populations 1.21735 0.93992 1.01932 1.03154 1.22467 0.95335 0.84356 0.99741 1.87888 1.20192 1.25576 1.94516 1.23007 0.80903 0.97032 0.97557 0.91310 1.23611 1.01099 0.97069 0.96371 1.22851 0.93933 0.92738 0.93194 0.91359 1.60771 1.30274 1.21161 1.18260 1.21668 0.97864 0.91786 0.90947 0.95413 1.21775 1.01131 0.99268 0.96920 1.19279 0.95043 0.90799 0.96583 1.21141 1.21960 1.12442 1.00434 0.93074 1.24970 0.95117 0.96857 0.97039 1.69954 1.25007 1.22058 1.36054 0.86741 0.78082 0.78694 0.85011 1.20374 1.21317 1.20157 1.22466 0.95917 0.95153 0.94852 1.22052 0.94528 1.02892 0.93959 1.22520 0.98240 0.98923 0.96445 1.22427 0.96458 1.00011 0.97590 1.21908 0.97566 1.00858 0.93976 0.91859 0.91922 0.91383 0.93688 0.93610 0.88901 0.91860 0.82020 0.92832 0.94455 0.93634 0.96226 0.95697 0.92958 0.89213 0.91793 0.92275 0.91665 0.92394 0.91327 0.91405 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.58 6.50 37.16 0.24 0.83 16 3 O -0.36 -4.85 9.10 -35.23 -0.32 -5.17 16 4 C 0.07 0.97 3.76 -26.24 -0.10 0.87 16 5 H 0.07 0.81 7.76 -51.93 -0.40 0.40 16 6 C -0.14 -2.05 7.54 -25.78 -0.19 -2.24 16 7 C 0.08 1.39 3.34 -67.22 -0.22 1.17 16 8 H 0.07 1.26 7.44 -51.93 -0.39 0.87 16 9 N -0.67 -12.81 5.82 -99.23 -0.58 -13.39 16 10 C 0.09 1.84 2.58 -67.72 -0.17 1.66 16 11 H 0.03 0.62 7.47 -51.93 -0.39 0.23 16 12 C -0.13 -2.47 9.42 37.16 0.35 -2.12 16 13 C 0.02 0.52 4.57 -27.89 -0.13 0.39 16 14 C -0.52 -14.33 8.12 -34.44 -0.28 -14.61 16 15 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.08 -1.20 1.00 -154.11 -0.15 -1.36 16 23 C -0.10 -1.35 5.76 -25.35 -0.15 -1.49 16 24 C -0.12 -1.56 6.91 -24.61 -0.17 -1.73 16 25 C -0.13 -1.74 6.84 -24.93 -0.17 -1.91 16 26 C -0.11 -1.54 6.06 -25.87 -0.16 -1.70 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.36 7.40 5.20 -39.29 -0.20 7.20 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.09 1.44 5.97 -51.93 -0.31 1.13 16 42 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.07 0.95 7.19 -51.93 -0.37 0.58 16 48 H 0.06 1.04 7.90 -51.93 -0.41 0.63 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -28.79 370.00 -9.80 -38.59 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -9.17 Total: 5.28 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -1.02 Total: -21.52 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.16 Total: -39.23 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.32 Total: -5.17 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.79 -9.80 -38.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579665348.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.088 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds