Wall clock time and date at job start Tue Mar 31 2020 06:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.88233 * 18.68904 * 4 3 2 6 6 C 1.53927 * 113.65142 * 247.26287 * 4 3 2 7 7 C 1.53923 * 87.22281 * 220.64976 * 6 4 3 8 8 H 1.09003 * 113.64979 * 270.37241 * 7 6 4 9 9 N 1.46898 * 113.73566 * 139.36090 * 7 6 4 10 10 C 1.46903 * 111.00031 * 107.69476 * 9 7 6 11 11 H 1.09000 * 109.46748 * 35.00877 * 10 9 7 12 12 C 1.52997 * 109.47530 * 275.00241 * 10 9 7 13 13 C 1.52997 * 109.46810 * 154.99792 * 10 9 7 14 14 C 1.50697 * 109.47628 * 295.00461 * 13 10 9 15 15 H 1.08001 * 119.99756 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00081 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00080 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00200 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47167 * 89.99373 * 18 16 14 20 20 H 1.48494 * 109.47181 * 209.99631 * 18 16 14 21 21 H 1.48500 * 109.46973 * 329.99864 * 18 16 14 22 22 C 1.53016 * 113.64964 * 150.00107 * 4 3 2 23 23 C 1.53563 * 115.12877 * 22.65554 * 22 4 3 24 24 C 1.55060 * 103.98184 * 206.86952 * 23 22 4 25 25 C 1.54942 * 102.86386 * 37.29679 * 24 23 22 26 26 C 1.53174 * 115.37356 * 256.64453 * 22 4 3 27 27 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 1.09002 * 113.58861 * 335.23537 * 6 4 3 33 33 H 1.08994 * 113.59120 * 106.06526 * 6 4 3 34 34 H 1.00894 * 111.00122 * 231.65511 * 9 7 6 35 35 H 1.08996 * 109.46845 * 60.00021 * 12 10 9 36 36 H 1.08998 * 109.47020 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.47103 * 300.00159 * 12 10 9 38 38 H 1.09000 * 109.46974 * 55.01021 * 13 10 9 39 39 H 1.09002 * 109.47262 * 175.00246 * 13 10 9 40 40 H 0.96999 * 119.99977 * 180.02562 * 17 16 14 41 41 H 1.08996 * 110.52745 * 325.49352 * 23 22 4 42 42 H 1.09002 * 110.52354 * 88.24503 * 23 22 4 43 43 H 1.08999 * 110.73807 * 278.94766 * 24 23 22 44 44 H 1.09006 * 110.73608 * 155.64148 * 24 23 22 45 45 H 1.09004 * 110.48291 * 203.76101 * 25 24 23 46 46 H 1.09008 * 110.47795 * 81.13454 * 25 24 23 47 47 H 1.09004 * 110.09549 * 248.85742 * 26 22 4 48 48 H 1.08997 * 110.09212 * 10.45497 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9283 0.5454 -0.3227 6 6 4.0039 2.0520 1.2997 7 6 4.9822 2.8483 0.4177 8 1 5.9146 2.3219 0.2136 9 7 5.1935 4.2305 0.8681 10 6 6.5283 4.3932 1.4598 11 1 7.2401 3.7602 0.9300 12 6 6.4851 3.9886 2.9347 13 6 6.9623 5.8557 1.3445 14 6 7.1236 6.2189 -0.1091 15 1 6.9349 5.4805 -0.8743 16 6 7.5110 7.4942 -0.4622 17 7 7.6513 7.8113 -1.7308 18 14 7.8367 8.7716 0.8613 19 1 9.2655 8.7160 1.2621 20 1 7.5231 10.1233 0.3324 21 1 6.9803 8.4909 2.0416 22 6 3.9465 2.7188 -0.7014 23 6 2.9385 3.8737 -0.7930 24 6 3.3836 4.6605 -2.0528 25 6 3.8337 3.5369 -3.0201 26 6 4.5212 2.5002 -2.1044 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.2965 2.6790 1.8424 33 1 4.4921 1.3145 1.9366 34 1 5.0512 4.8830 0.1118 35 1 6.1759 2.9467 3.0167 36 1 7.4756 4.1089 3.3735 37 1 5.7733 4.6216 3.4644 38 1 6.2053 6.4961 1.7973 39 1 7.9120 5.9947 1.8613 40 1 7.9242 8.7083 -1.9792 41 1 1.9268 3.4887 -0.9206 42 1 2.9992 4.5052 0.0933 43 1 4.2156 5.3247 -1.8190 44 1 2.5482 5.2202 -2.4735 45 1 4.5401 3.9255 -3.7538 46 1 2.9709 3.0936 -3.5175 47 1 5.5989 2.6632 -2.0972 48 1 4.2969 1.4903 -2.4476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579665351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:43 Heat of formation + Delta-G solvation = -48.556084 kcal Electronic energy + Delta-G solvation = -23833.209243 eV Core-core repulsion = 20694.695489 eV Total energy + Delta-G solvation = -3138.513754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44868 -37.20965 -35.95177 -34.19293 -32.36511 -31.04497 -29.32364 -28.32123 -27.82710 -26.48287 -23.57335 -22.83951 -22.19045 -21.41730 -20.23691 -19.38679 -17.93013 -16.79396 -16.66084 -15.90500 -15.50571 -15.30936 -14.55693 -14.29897 -14.27393 -13.51217 -13.23004 -13.03230 -12.78850 -12.66174 -12.38822 -12.28092 -11.99909 -11.89884 -11.63698 -11.48445 -11.35018 -11.22579 -11.07228 -10.77179 -10.73385 -10.57151 -10.50850 -10.34418 -10.11507 -10.06833 -9.79837 -9.70960 -9.36799 -9.18047 -9.13626 -8.54524 -7.65160 -6.05647 -4.03737 3.31375 3.39472 3.44526 3.71394 4.45587 4.66677 4.73826 4.79662 4.95211 5.03068 5.11149 5.13549 5.24583 5.29305 5.31048 5.35712 5.55438 5.56780 5.69232 5.78905 5.85595 5.88044 5.92542 5.98068 6.00738 6.07534 6.10803 6.17088 6.21602 6.24702 6.33527 6.41624 6.50237 6.53167 6.60430 6.64230 6.75881 6.79619 6.84119 6.90520 7.20499 7.34564 7.39966 7.77638 8.00244 8.30849 8.50050 8.96521 9.57485 11.07088 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021875 B = 0.004843 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.686753 B = 5780.730633 C = 6555.944127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.366 6.366 4 C 0.071 3.929 5 H 0.080 0.920 6 C -0.139 4.139 7 C 0.077 3.923 8 H 0.067 0.933 9 N -0.666 5.666 10 C 0.095 3.905 11 H 0.034 0.966 12 C -0.136 4.136 13 C -0.018 4.018 14 C -0.522 4.522 15 H 0.070 0.930 16 C 0.070 3.930 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.264 1.264 22 C -0.078 4.078 23 C -0.094 4.094 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.113 4.113 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.362 0.638 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.025 0.975 39 H 0.015 0.985 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 -14.446 2.598 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.285 6.285 4 C 0.012 3.988 5 H 0.097 0.903 6 C -0.178 4.178 7 C -0.034 4.034 8 H 0.084 0.916 9 N -0.301 5.301 10 C -0.015 4.015 11 H 0.052 0.948 12 C -0.194 4.194 13 C -0.056 4.056 14 C -0.560 4.560 15 H 0.088 0.912 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.079 4.079 23 C -0.132 4.132 24 C -0.166 4.166 25 C -0.158 4.158 26 C -0.150 4.150 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.187 0.813 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.033 0.967 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.022 -14.207 3.068 18.241 hybrid contribution 1.106 0.366 -0.252 1.192 sum -9.916 -13.841 2.816 17.258 Atomic orbital electron populations 1.21731 0.94115 1.01831 1.03095 1.22446 0.95355 0.84755 0.99552 1.87959 1.20824 1.25182 1.94562 1.23545 0.80649 0.96999 0.97558 0.90258 1.23607 0.98919 0.98930 0.96311 1.22686 0.95213 0.91775 0.93727 0.91567 1.60677 1.29203 1.03161 1.37101 1.21465 0.88388 0.98384 0.93220 0.94843 1.21817 1.00321 1.00050 0.97253 1.19781 0.96065 0.91825 0.97905 1.21072 1.46534 0.97532 0.90829 0.91214 1.24986 0.94708 0.98320 0.95101 1.69914 1.47789 1.20343 1.15887 0.86797 0.78910 0.80913 0.82780 1.20495 1.21501 1.18861 1.22539 0.96111 0.95284 0.93944 1.21916 0.97618 0.94905 0.98729 1.22607 1.01212 0.97420 0.95350 1.22320 0.99475 0.96247 0.97728 1.22094 1.00255 0.98609 0.94053 0.91899 0.91937 0.91535 0.93771 0.93850 0.88675 0.92394 0.81325 0.94069 0.93589 0.92748 0.95696 0.96653 0.92796 0.91015 0.89994 0.90161 0.92144 0.91855 0.92460 0.91454 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.57 6.50 37.16 0.24 0.81 16 3 O -0.37 -4.88 8.98 -35.23 -0.32 -5.19 16 4 C 0.07 0.94 3.73 -26.24 -0.10 0.84 16 5 H 0.08 0.94 7.83 -51.93 -0.41 0.54 16 6 C -0.14 -1.97 7.55 -25.77 -0.19 -2.16 16 7 C 0.08 1.23 3.37 -67.22 -0.23 1.01 16 8 H 0.07 1.09 7.44 -51.93 -0.39 0.70 16 9 N -0.67 -12.46 5.41 -99.22 -0.54 -13.00 16 10 C 0.10 1.90 2.58 -67.71 -0.17 1.72 16 11 H 0.03 0.70 7.47 -51.93 -0.39 0.31 16 12 C -0.14 -2.33 9.42 37.16 0.35 -1.98 16 13 C -0.02 -0.43 3.64 -27.89 -0.10 -0.53 16 14 C -0.52 -14.24 8.67 -34.44 -0.30 -14.54 16 15 H 0.07 2.04 7.73 -52.49 -0.41 1.63 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 18 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 22 C -0.08 -1.15 1.01 -154.11 -0.16 -1.31 16 23 C -0.09 -1.46 5.14 -25.35 -0.13 -1.59 16 24 C -0.13 -2.06 6.77 -24.62 -0.17 -2.22 16 25 C -0.12 -1.77 6.84 -24.94 -0.17 -1.94 16 26 C -0.11 -1.64 6.33 -25.87 -0.16 -1.81 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.36 7.55 5.05 -39.29 -0.20 7.35 16 35 H 0.04 0.63 8.07 -51.93 -0.42 0.22 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 39 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.07 1.10 7.08 -51.93 -0.37 0.73 16 42 H 0.08 1.39 6.79 -51.93 -0.35 1.03 16 43 H 0.08 1.53 7.34 -51.93 -0.38 1.15 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 47 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 48 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -28.61 365.27 -9.38 -37.99 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -9.13 Total: 6.77 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.01 Total: -22.73 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.24 Total: -39.29 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.32 Total: -5.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.61 -9.38 -37.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579665351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.565 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds