Wall clock time and date at job start Tue Mar 31 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.46899 * 2 1 4 4 C 1.42904 * 114.00064 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.93473 * 21.87156 * 4 3 2 6 6 C 1.53915 * 113.65385 * 250.49886 * 4 3 2 7 7 C 1.53919 * 87.30999 * 220.69070 * 6 4 3 8 8 H 1.08996 * 113.65288 * 270.33169 * 7 6 4 9 9 N 1.46903 * 113.65213 * 139.39965 * 7 6 4 10 10 C 1.46905 * 110.99872 * 104.50456 * 9 7 6 11 11 H 1.09002 * 109.47138 * 325.00320 * 10 9 7 12 12 C 1.53001 * 109.46856 * 84.99820 * 10 9 7 13 13 C 1.52997 * 109.47322 * 205.00270 * 10 9 7 14 14 C 1.50697 * 109.47097 * 64.99670 * 13 10 9 15 15 H 1.08002 * 120.00234 * 0.02562 * 14 13 10 16 16 C 1.37880 * 120.00121 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99985 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99680 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47220 * 90.00360 * 18 16 14 20 20 H 1.48506 * 109.47270 * 209.99872 * 18 16 14 21 21 H 1.48498 * 109.47576 * 330.00138 * 18 16 14 22 22 C 1.53019 * 86.85399 * 24.82050 * 7 6 4 23 23 C 1.53561 * 115.13539 * 218.16222 * 22 7 6 24 24 C 1.55060 * 103.98709 * 206.85364 * 23 22 7 25 25 C 1.54950 * 102.85854 * 37.30534 * 24 23 22 26 26 C 1.53177 * 115.37517 * 92.15384 * 22 7 6 27 27 H 1.09008 * 109.46943 * 60.00350 * 1 2 3 28 28 H 1.08998 * 109.46720 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47477 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.47477 * 239.99913 * 2 1 3 31 31 H 1.08999 * 109.46862 * 119.99452 * 2 1 3 32 32 H 1.09002 * 113.59278 * 106.06589 * 6 4 3 33 33 H 1.08999 * 113.59151 * 335.31479 * 6 4 3 34 34 H 1.00900 * 111.00131 * 228.45727 * 9 7 6 35 35 H 1.09002 * 109.46839 * 60.00316 * 12 10 9 36 36 H 1.09000 * 109.47051 * 179.97438 * 12 10 9 37 37 H 1.08994 * 109.47679 * 300.00086 * 12 10 9 38 38 H 1.08995 * 109.47110 * 184.99967 * 13 10 9 39 39 H 1.09009 * 109.46867 * 305.00183 * 13 10 9 40 40 H 0.96997 * 119.99271 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.53241 * 325.47726 * 23 22 7 42 42 H 1.08997 * 110.52562 * 88.22413 * 23 22 7 43 43 H 1.09005 * 110.73742 * 278.96554 * 24 23 22 44 44 H 1.09000 * 110.73886 * 155.65218 * 24 23 22 45 45 H 1.08996 * 110.48475 * 203.76537 * 25 24 23 46 46 H 1.08997 * 110.48028 * 81.14083 * 25 24 23 47 47 H 1.09002 * 110.09026 * 248.88069 * 26 22 7 48 48 H 1.08996 * 110.08994 * 10.46697 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9280 0.5651 -0.3730 6 6 4.0087 1.9784 1.3297 7 6 4.9841 2.8246 0.4921 8 1 5.9165 2.3118 0.2562 9 7 5.1952 4.1782 1.0224 10 6 6.5014 4.2859 1.6860 11 1 6.7361 3.3436 2.1811 12 6 7.5783 4.5969 0.6446 13 6 6.4554 5.4095 2.7234 14 6 5.4823 5.0457 3.8151 15 1 4.9503 4.1068 3.7735 16 6 5.2713 5.9116 4.8672 17 7 4.4225 5.5938 5.8202 18 14 6.1910 7.5358 4.9389 19 1 5.4011 8.5831 4.2430 20 1 6.3927 7.9284 6.3568 21 1 7.5105 7.3874 4.2740 22 6 3.9459 2.7578 -0.6300 23 6 4.5236 2.6112 -2.0452 24 6 3.4440 3.2473 -2.9586 25 6 2.9395 4.4444 -2.1138 26 6 2.9403 3.9128 -0.6635 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 4.4992 1.2064 1.9226 33 1 3.3030 2.5728 1.9100 34 1 5.1013 4.8706 0.2945 35 1 7.3435 5.5391 0.1495 36 1 8.5474 4.6772 1.1370 37 1 7.6111 3.7964 -0.0944 38 1 7.4476 5.5486 3.1525 39 1 6.1340 6.3341 2.2436 40 1 4.2738 6.2032 6.5601 41 1 5.4652 3.1534 -2.1319 42 1 4.6631 1.5592 -2.2940 43 1 2.6354 2.5417 -3.1495 44 1 3.8846 3.5932 -3.8936 45 1 1.9310 4.7263 -2.4161 46 1 3.6183 5.2918 -2.2097 47 1 1.9469 3.5522 -0.3963 48 1 3.2509 4.6997 0.0237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579665352.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:45 Heat of formation + Delta-G solvation = -41.406447 kcal Electronic energy + Delta-G solvation = -23683.656824 eV Core-core repulsion = 20545.453102 eV Total energy + Delta-G solvation = -3138.203722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.48236 -37.16034 -36.14912 -34.24456 -32.29086 -30.98544 -29.35836 -28.52112 -27.59300 -26.65963 -23.53715 -22.77327 -22.25935 -21.37360 -20.58552 -19.62462 -17.94684 -16.69929 -16.48404 -15.87497 -15.59075 -15.32525 -14.80921 -14.33809 -13.90861 -13.52770 -13.25405 -13.13197 -12.94947 -12.62901 -12.50145 -12.30830 -12.15149 -12.03323 -11.63325 -11.46405 -11.39111 -11.28296 -11.07235 -11.01940 -10.81773 -10.71343 -10.55879 -10.31201 -10.11794 -10.08142 -9.92712 -9.61800 -9.48500 -9.10385 -8.96164 -8.35781 -7.55368 -5.84255 -3.77383 3.40741 3.47808 3.50269 3.75793 4.55814 4.60349 4.62771 4.71232 4.94984 4.98833 5.07428 5.17350 5.23336 5.29089 5.31209 5.35617 5.50366 5.55168 5.63154 5.65961 5.68437 5.71138 5.78378 5.82393 5.87969 5.89033 5.92627 5.95626 6.05417 6.06986 6.24934 6.26242 6.30070 6.41104 6.51667 6.60821 6.64791 6.68607 6.81449 6.89620 7.23250 7.39053 7.47142 7.91211 7.99331 8.15995 8.79870 9.28464 9.79260 11.29948 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.004933 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.427389 B = 5674.628645 C = 6487.649427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.071 3.929 5 H 0.078 0.922 6 C -0.137 4.137 7 C 0.075 3.925 8 H 0.062 0.938 9 N -0.643 5.643 10 C 0.097 3.903 11 H 0.069 0.931 12 C -0.182 4.182 13 C -0.003 4.003 14 C -0.485 4.485 15 H 0.078 0.922 16 C 0.060 3.940 17 N -0.910 5.910 18 Si 0.874 3.126 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.269 1.269 22 C -0.075 4.075 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.102 4.102 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.332 0.668 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.258 0.742 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 -9.285 -17.542 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.013 3.987 5 H 0.096 0.904 6 C -0.175 4.175 7 C -0.036 4.036 8 H 0.080 0.920 9 N -0.274 5.274 10 C -0.012 4.012 11 H 0.087 0.913 12 C -0.241 4.241 13 C -0.041 4.041 14 C -0.523 4.523 15 H 0.096 0.904 16 C -0.139 4.139 17 N -0.551 5.551 18 Si 0.702 3.298 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.194 1.194 22 C -0.075 4.075 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.140 4.140 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.717 -9.168 -16.782 19.315 hybrid contribution 1.282 0.612 -0.586 1.536 sum -1.436 -8.556 -17.369 19.415 Atomic orbital electron populations 1.21733 0.94102 1.01825 1.03139 1.22431 0.95377 0.84673 0.99530 1.87946 1.20683 1.25229 1.94600 1.23553 0.80856 0.96501 0.97792 0.90449 1.23587 0.98918 0.98915 0.96104 1.22579 0.95071 0.92064 0.93861 0.91997 1.60652 1.32586 1.02173 1.31989 1.21606 0.85199 1.00799 0.93628 0.91277 1.22610 1.01111 1.00449 0.99949 1.19594 0.96838 0.93419 0.94247 1.21044 1.22097 1.05895 1.03294 0.90425 1.25010 0.95265 0.97759 0.95884 1.69917 1.36321 1.36946 1.11868 0.86889 0.80951 0.85226 0.76740 1.20632 1.21806 1.19427 1.22494 0.96050 0.95546 0.93434 1.22323 0.98277 1.00192 0.94296 1.22471 0.98170 0.97687 0.97500 1.22403 1.00569 0.97391 0.95712 1.21769 0.99293 0.96731 0.96197 0.92096 0.91544 0.91673 0.94044 0.93569 0.92213 0.87803 0.84797 0.93126 0.92606 0.94119 0.96733 0.97146 0.93195 0.91606 0.92183 0.91789 0.92331 0.92104 0.92062 0.90320 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.06 0.63 6.51 37.16 0.24 0.88 16 3 O -0.37 -5.18 8.80 -35.23 -0.31 -5.49 16 4 C 0.07 0.97 3.79 -26.16 -0.10 0.87 16 5 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 6 C -0.14 -2.23 7.55 -25.78 -0.19 -2.43 16 7 C 0.08 1.16 3.33 -67.22 -0.22 0.93 16 8 H 0.06 0.92 7.46 -51.93 -0.39 0.53 16 9 N -0.64 -11.62 5.08 -99.22 -0.50 -12.13 16 10 C 0.10 1.88 2.40 -67.71 -0.16 1.72 16 11 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 12 C -0.18 -2.86 9.15 37.16 0.34 -2.52 16 13 C 0.00 -0.08 3.72 -27.89 -0.10 -0.18 16 14 C -0.48 -13.85 9.39 -34.44 -0.32 -14.17 16 15 H 0.08 2.42 7.99 -52.49 -0.42 2.00 16 16 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 17 N -0.91 -28.73 13.96 55.43 0.77 -27.96 16 18 Si 0.87 22.25 27.47 -169.99 -4.67 17.58 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 22 C -0.07 -1.00 1.01 -154.02 -0.16 -1.16 16 23 C -0.11 -1.29 6.20 -25.35 -0.16 -1.45 16 24 C -0.12 -1.30 6.91 -24.61 -0.17 -1.47 16 25 C -0.12 -1.46 6.84 -24.93 -0.17 -1.63 16 26 C -0.10 -1.46 5.76 -25.87 -0.15 -1.61 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 34 H 0.33 5.61 7.02 -39.29 -0.28 5.34 16 35 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.56 7.68 -51.93 -0.40 0.16 16 38 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 39 H 0.01 0.25 7.57 -51.92 -0.39 -0.15 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.07 0.75 8.11 -51.93 -0.42 0.32 16 42 H 0.06 0.63 7.81 -51.93 -0.41 0.22 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.08 1.23 6.67 -51.93 -0.35 0.88 16 48 H 0.09 1.43 6.00 -51.93 -0.31 1.12 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -30.81 367.61 -9.42 -40.23 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -9.20 Total: 3.85 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -1.04 Total: -21.62 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.27 Total: -40.09 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.31 Total: -5.49 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.81 -9.42 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579665352.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.178 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds