Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46679 * 2 1 4 4 N 1.46496 * 109.47321 * 120.00070 * 2 1 3 5 5 C 1.46509 * 119.99768 * 305.50569 * 4 2 1 6 6 C 1.50698 * 109.46975 * 270.00188 * 5 4 2 7 7 H 1.07997 * 120.00439 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99605 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99767 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99893 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47474 * 89.99962 * 10 8 6 12 12 H 1.48500 * 109.47232 * 209.99936 * 10 8 6 13 13 H 1.48504 * 109.47168 * 329.99782 * 10 8 6 14 14 C 1.34772 * 120.00353 * 125.51023 * 4 2 1 15 15 O 1.21277 * 120.00416 * 185.52273 * 14 4 2 16 16 C 1.50706 * 119.99789 * 5.52305 * 14 4 2 17 17 H 1.09001 * 109.46743 * 44.87868 * 16 14 4 18 18 C 1.53000 * 109.46927 * 284.87927 * 16 14 4 19 19 C 1.52997 * 109.47010 * 179.97438 * 18 16 14 20 20 C 1.53003 * 109.47031 * 60.00488 * 19 18 16 21 21 H 1.08996 * 109.47436 * 59.99189 * 20 19 18 22 22 C 1.52997 * 109.47400 * 179.97438 * 20 19 18 23 23 C 1.53004 * 109.46643 * 299.99944 * 20 19 18 24 24 H 1.08998 * 109.47239 * 299.99390 * 23 20 19 25 25 C 1.53005 * 109.46970 * 180.02562 * 23 20 19 26 26 C 1.52992 * 109.47182 * 164.87761 * 16 14 4 27 27 H 1.09001 * 109.47397 * 299.99810 * 1 2 3 28 28 H 1.08991 * 109.47433 * 60.00022 * 1 2 3 29 29 H 1.09002 * 109.46635 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46665 * 240.00331 * 2 1 3 31 31 H 1.09006 * 109.47048 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47092 * 299.99938 * 3 2 1 33 33 H 1.08993 * 109.47628 * 60.00178 * 3 2 1 34 34 H 1.08993 * 109.46915 * 30.00439 * 5 4 2 35 35 H 1.08999 * 109.46425 * 150.00283 * 5 4 2 36 36 H 0.96999 * 120.00057 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47408 * 300.00332 * 18 16 14 38 38 H 1.08998 * 109.47115 * 60.00306 * 18 16 14 39 39 H 1.08998 * 109.47653 * 300.00607 * 19 18 16 40 40 H 1.09007 * 109.47233 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.46953 * 179.97438 * 22 20 19 42 42 H 1.08998 * 109.47277 * 299.99632 * 22 20 19 43 43 H 1.09004 * 109.47310 * 59.99609 * 22 20 19 44 44 H 1.08993 * 109.47334 * 59.99750 * 25 23 20 45 45 H 1.08998 * 109.46931 * 180.02562 * 25 23 20 46 46 H 1.09004 * 109.46895 * 299.99545 * 25 23 20 47 47 H 1.09004 * 109.46946 * 59.99923 * 26 16 14 48 48 H 1.08998 * 109.47814 * 300.00038 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5678 -0.2642 2.5234 6 6 2.5038 0.7894 3.0571 7 1 3.3494 1.1098 2.4666 8 6 2.2805 1.3444 4.2994 9 7 1.2505 0.9547 5.0182 10 14 3.4401 2.6509 4.9607 11 1 2.9591 3.9942 4.5489 12 1 3.4803 2.5727 6.4431 13 1 4.8030 2.4247 4.4160 14 6 2.8822 -1.7181 1.0756 15 8 3.2089 -2.3538 2.0554 16 6 3.4422 -2.0770 -0.2767 17 1 3.7495 -1.1688 -0.7953 18 6 2.3701 -2.7956 -1.0983 19 6 2.9385 -3.1594 -2.4714 20 6 4.1480 -4.0797 -2.2952 21 1 3.8411 -4.9880 -1.7766 22 6 4.7160 -4.4441 -3.6683 23 6 5.2201 -3.3610 -1.4735 24 1 5.5272 -2.4528 -1.9920 25 6 6.4300 -4.2810 -1.2978 26 6 4.6516 -2.9973 -0.1000 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.5612 0.1472 2.4505 35 1 1.5624 -1.1207 3.1976 36 1 1.0936 1.3448 5.8923 37 1 2.0628 -3.7037 -0.5796 38 1 1.5086 -2.1399 -1.2242 39 1 3.2455 -2.2511 -2.9899 40 1 2.1748 -3.6718 -3.0566 41 1 5.5780 -5.0993 -3.5426 42 1 3.9521 -4.9562 -4.2532 43 1 5.0229 -3.5359 -4.1872 44 1 6.8347 -4.5399 -2.2761 45 1 7.1935 -3.7692 -0.7120 46 1 6.1232 -5.1896 -0.7795 47 1 4.3443 -3.9054 0.4187 48 1 5.4154 -2.4854 0.4853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583243810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -74.072831 kcal Electronic energy + Delta-G solvation = -23945.350260 eV Core-core repulsion = 20805.730017 eV Total energy + Delta-G solvation = -3139.620243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.04785 -38.11244 -35.90104 -33.29576 -32.56375 -31.94534 -30.74826 -27.89796 -27.14861 -26.70367 -25.60630 -23.06206 -21.79279 -21.76348 -20.55338 -19.68520 -17.92952 -16.53747 -16.39360 -15.34980 -14.89356 -14.65896 -14.49788 -14.33586 -13.81797 -13.70466 -13.56685 -13.32431 -12.79601 -12.50355 -12.33451 -12.11839 -12.07788 -11.83413 -11.76220 -11.68208 -11.49898 -11.33472 -11.09376 -10.95502 -10.90557 -10.80824 -10.72586 -10.49193 -10.42144 -10.32151 -10.16198 -9.98636 -9.81690 -9.49191 -8.66496 -8.38419 -7.55406 -5.99930 -4.03142 3.31269 3.38287 3.41711 3.52926 3.98799 4.47453 4.64516 4.69762 4.73061 5.05879 5.14311 5.22049 5.32385 5.34624 5.36827 5.43911 5.48663 5.54345 5.58224 5.62273 5.69093 5.74802 5.76530 5.82027 5.88962 5.92835 6.01553 6.04303 6.06060 6.12815 6.24109 6.27748 6.29615 6.33364 6.37857 6.40197 6.50396 6.63494 6.66543 6.97914 7.20143 7.54312 7.65776 7.97923 8.30689 8.55183 8.96780 9.20665 9.61112 11.08110 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.004793 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.980321 B = 5840.392674 C = 6448.892448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 C -0.160 4.160 4 N -0.593 5.593 5 C 0.244 3.756 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.510 3.490 15 O -0.545 6.545 16 C -0.107 4.107 17 H 0.085 0.915 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.088 4.088 21 H 0.070 0.930 22 C -0.148 4.148 23 C -0.086 4.086 24 H 0.067 0.933 25 C -0.148 4.148 26 C -0.093 4.093 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -6.685 -18.099 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 C -0.218 4.218 4 N -0.324 5.324 5 C 0.124 3.876 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.297 3.703 15 O -0.423 6.423 16 C -0.128 4.128 17 H 0.104 0.896 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.107 4.107 21 H 0.088 0.912 22 C -0.205 4.205 23 C -0.105 4.105 24 H 0.086 0.914 25 C -0.205 4.205 26 C -0.131 4.131 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.234 -6.978 -17.376 19.003 hybrid contribution 0.573 0.953 0.506 1.221 sum 3.807 -6.026 -16.870 18.314 Atomic orbital electron populations 1.22151 0.95572 1.01789 1.02468 1.21110 0.94168 0.93887 0.88435 1.22185 1.01114 0.96186 1.02309 1.48288 1.44280 1.31322 1.08548 1.19240 0.95047 0.95753 0.77517 1.21460 1.11371 1.20972 1.01957 0.92435 1.24926 0.95504 0.97153 0.96587 1.69932 1.28376 1.43061 1.12100 0.86562 0.81387 0.81698 0.78167 1.20715 1.21179 1.19972 1.20327 0.79458 0.80423 0.90090 1.90641 1.59682 1.51865 1.40094 1.21335 0.96766 0.99779 0.94949 0.89638 1.21634 0.97395 1.00791 0.95327 1.21583 0.97107 0.99469 0.96642 1.21186 0.95113 0.98605 0.95773 0.91205 1.21888 1.00736 1.01245 0.96655 1.21183 0.94820 0.98398 0.96050 0.91410 1.21870 0.97665 0.99699 1.01269 1.21385 0.96077 0.99774 0.95826 0.91129 0.92369 0.92905 0.90102 0.93007 0.93349 0.90082 0.94820 0.94092 0.92847 0.91497 0.91018 0.91915 0.91941 0.92518 0.93028 0.92859 0.92665 0.92752 0.92728 0.91067 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.06 37.16 0.34 -2.10 16 2 C 0.13 2.12 2.44 -67.93 -0.17 1.95 16 3 C -0.16 -2.65 8.62 37.16 0.32 -2.33 16 4 N -0.59 -12.56 2.39 -167.47 -0.40 -12.96 16 5 C 0.24 6.36 4.78 -5.19 -0.02 6.33 16 6 C -0.52 -14.53 7.86 -34.44 -0.27 -14.81 16 7 H 0.06 1.61 7.59 -52.49 -0.40 1.21 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 10 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.51 10.78 6.90 -10.98 -0.08 10.70 16 15 O -0.55 -13.98 15.55 5.56 0.09 -13.89 16 16 C -0.11 -1.64 1.66 -91.77 -0.15 -1.80 16 17 H 0.09 1.24 7.32 -51.93 -0.38 0.86 16 18 C -0.11 -1.45 4.81 -26.73 -0.13 -1.58 16 19 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 20 C -0.09 -0.88 2.25 -90.62 -0.20 -1.08 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.15 -1.22 8.84 37.16 0.33 -0.89 16 23 C -0.09 -0.96 2.25 -90.59 -0.20 -1.16 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 C -0.15 -1.49 8.84 37.16 0.33 -1.16 16 26 C -0.09 -1.36 3.90 -26.71 -0.10 -1.46 16 27 H 0.07 1.22 6.51 -51.93 -0.34 0.89 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.13 4.18 -51.93 -0.22 0.91 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.59 6.93 -51.93 -0.36 1.23 16 34 H 0.03 0.89 6.15 -51.93 -0.32 0.57 16 35 H 0.04 1.23 7.35 -51.93 -0.38 0.85 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.89 5.92 -51.93 -0.31 0.58 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.48 6.43 -51.93 -0.33 0.14 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 359.99 15.07 5.42 5.42 Total: -1.00 -31.68 359.99 -8.26 -39.94 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.84 Total: -0.49 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.25 Total: -9.02 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.34 Total: -38.90 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.68 -8.26 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583243810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.133 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds