Wall clock time and date at job start Tue Mar 31 2020 05:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46851 * 2 1 4 4 N 1.46499 * 109.47314 * 119.99773 * 2 1 3 5 5 C 1.46499 * 119.99635 * 115.60953 * 4 2 1 6 6 C 1.50697 * 109.47167 * 276.39841 * 5 4 2 7 7 H 1.08000 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99969 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99912 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00211 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47469 * 59.99546 * 10 8 6 12 12 H 1.48505 * 109.47169 * 299.99708 * 10 8 6 13 13 H 1.48501 * 109.47499 * 180.02562 * 10 8 6 14 14 C 1.34774 * 120.00012 * 295.61265 * 4 2 1 15 15 O 1.21281 * 120.00076 * 4.93368 * 14 4 2 16 16 C 1.50706 * 119.99792 * 184.93204 * 14 4 2 17 17 H 1.08997 * 109.47039 * 306.37192 * 16 14 4 18 18 C 1.53000 * 109.46802 * 66.37248 * 16 14 4 19 19 C 1.53005 * 109.46695 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47282 * 300.00185 * 19 18 16 21 21 H 1.09003 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47141 * 299.99829 * 20 19 18 23 23 C 1.52997 * 109.47332 * 59.99875 * 20 19 18 24 24 H 1.08997 * 109.47099 * 59.99854 * 23 20 19 25 25 C 1.53005 * 109.47096 * 180.02562 * 23 20 19 26 26 C 1.52993 * 109.47170 * 300.00050 * 23 20 19 27 27 H 1.09000 * 109.47065 * 307.89903 * 1 2 3 28 28 H 1.08995 * 109.47357 * 67.90064 * 1 2 3 29 29 H 1.08997 * 109.46474 * 187.90493 * 1 2 3 30 30 H 1.08999 * 109.46758 * 240.00125 * 2 1 3 31 31 H 1.08999 * 109.46870 * 183.06933 * 3 2 1 32 32 H 1.09000 * 109.46647 * 303.06392 * 3 2 1 33 33 H 1.08998 * 109.47323 * 63.06283 * 3 2 1 34 34 H 1.08998 * 109.46696 * 156.40001 * 5 4 2 35 35 H 1.08997 * 109.47560 * 36.40355 * 5 4 2 36 36 H 0.96996 * 120.00378 * 0.02562 * 9 8 6 37 37 H 1.08992 * 109.47249 * 300.00040 * 18 16 14 38 38 H 1.08997 * 109.46848 * 60.00204 * 18 16 14 39 39 H 1.09004 * 109.46996 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.46833 * 60.00137 * 19 18 16 41 41 H 1.08998 * 109.46955 * 179.97438 * 22 20 19 42 42 H 1.09000 * 109.46977 * 300.00557 * 22 20 19 43 43 H 1.09006 * 109.46874 * 59.99807 * 22 20 19 44 44 H 1.08995 * 109.46758 * 180.02562 * 25 23 20 45 45 H 1.08998 * 109.46731 * 300.00279 * 25 23 20 46 46 H 1.08990 * 109.46991 * 60.00211 * 25 23 20 47 47 H 1.09004 * 109.47244 * 300.00074 * 26 23 20 48 48 H 1.09004 * 109.47127 * 179.97438 * 26 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6905 1.1962 5 6 2.7797 -1.9352 1.0638 6 6 1.8268 -3.0943 0.9234 7 1 0.7608 -2.9211 0.9314 8 6 2.3159 -4.3759 0.7846 9 7 3.6140 -4.5869 0.7753 10 14 1.1349 -5.8125 0.6098 11 1 0.2929 -5.6171 -0.5977 12 1 0.2662 -5.8883 1.8119 13 1 1.9065 -7.0744 0.4771 14 6 1.7674 -0.1808 2.4183 15 8 1.0623 0.7993 2.5334 16 6 2.3629 -0.8286 3.6418 17 1 2.1107 -1.8890 3.6505 18 6 3.8840 -0.6663 3.6155 19 6 4.4884 -1.3235 4.8580 20 6 3.9257 -0.6546 6.1137 21 1 4.3567 -1.1225 6.9988 22 6 4.2797 0.8339 6.1008 23 6 2.4046 -0.8168 6.1398 24 1 2.1524 -1.8772 6.1490 25 6 1.8418 -0.1473 7.3953 26 6 1.8001 -0.1596 4.8975 27 1 -0.3633 0.6313 0.8109 28 1 -0.3634 0.3866 -0.9521 29 1 -0.3632 -1.0179 0.1413 30 1 1.8934 -0.5138 -0.8900 31 1 3.1286 1.4431 -0.0550 32 1 1.6325 1.9719 -0.8613 33 1 1.7222 1.9403 0.9161 34 1 3.3982 -2.0787 1.9498 35 1 3.4167 -1.8795 0.1812 36 1 4.2273 -3.8410 0.8665 37 1 4.2848 -1.1425 2.7208 38 1 4.1361 0.3941 3.6068 39 1 5.5721 -1.2075 4.8396 40 1 4.2363 -2.3839 4.8672 41 1 3.8784 1.3105 6.9951 42 1 5.3634 0.9495 6.0821 43 1 3.8491 1.3021 5.2156 44 1 0.7582 -0.2633 7.4141 45 1 2.2725 -0.6151 8.2805 46 1 2.0940 0.9130 7.3856 47 1 2.0523 0.9008 4.8882 48 1 0.7165 -0.2756 4.9159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583243811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:15 Heat of formation + Delta-G solvation = -72.147422 kcal Electronic energy + Delta-G solvation = -24448.883546 eV Core-core repulsion = 21309.346795 eV Total energy + Delta-G solvation = -3139.536751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17935 -38.36954 -35.44318 -33.70883 -32.66123 -31.64556 -30.75250 -27.46439 -26.72875 -26.39994 -25.67835 -23.46124 -22.69295 -21.39631 -20.93500 -18.21712 -18.02371 -17.13069 -15.87693 -15.54958 -15.33091 -14.82800 -14.54258 -13.83972 -13.76113 -13.75392 -13.21902 -13.02803 -12.79041 -12.49965 -12.45206 -12.34500 -12.05164 -11.89250 -11.75874 -11.62756 -11.45021 -11.31863 -11.03713 -10.85850 -10.80328 -10.73481 -10.63403 -10.42827 -10.35358 -10.17551 -9.92652 -9.90015 -9.69594 -9.16585 -8.68299 -8.45082 -7.61142 -6.48962 -4.23983 3.36965 3.37789 3.42938 3.57024 3.89785 4.43692 4.85104 4.89114 4.89616 5.22241 5.31742 5.34237 5.37478 5.48674 5.56166 5.58455 5.65219 5.69781 5.79478 5.80914 5.86616 5.88826 5.98853 6.04953 6.07068 6.07359 6.14753 6.18504 6.20531 6.25802 6.33290 6.37538 6.45393 6.47261 6.51642 6.55085 6.64696 6.69032 6.72448 6.82968 6.86633 6.97068 7.54352 7.90341 8.19335 8.48413 8.69557 9.03778 9.46297 10.86700 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.006839 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.913610 B = 4093.148821 C = 5215.059590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 C -0.168 4.168 4 N -0.587 5.587 5 C 0.215 3.785 6 C -0.613 4.613 7 H 0.054 0.946 8 C 0.024 3.976 9 N -0.906 5.906 10 Si 1.066 2.934 11 H -0.288 1.288 12 H -0.287 1.287 13 H -0.281 1.281 14 C 0.523 3.477 15 O -0.569 6.569 16 C -0.103 4.103 17 H 0.101 0.899 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.085 4.085 21 H 0.065 0.935 22 C -0.152 4.152 23 C -0.089 4.089 24 H 0.070 0.930 25 C -0.146 4.146 26 C -0.089 4.089 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.018 0.982 36 H 0.268 0.732 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 8.187 7.559 11.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 C -0.226 4.226 4 N -0.317 5.317 5 C 0.095 3.905 6 C -0.652 4.652 7 H 0.072 0.928 8 C -0.181 4.181 9 N -0.542 5.542 10 Si 0.894 3.106 11 H -0.214 1.214 12 H -0.214 1.214 13 H -0.206 1.206 14 C 0.312 3.688 15 O -0.451 6.451 16 C -0.124 4.124 17 H 0.119 0.881 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.103 4.103 21 H 0.083 0.917 22 C -0.209 4.209 23 C -0.107 4.107 24 H 0.088 0.912 25 C -0.203 4.203 26 C -0.127 4.127 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.192 7.028 7.394 10.203 hybrid contribution 0.056 1.404 -0.049 1.406 sum 0.248 8.432 7.345 11.185 Atomic orbital electron populations 1.22135 0.95727 1.02614 1.01360 1.20784 0.94271 0.92140 0.88258 1.22216 1.00277 0.97008 1.03061 1.48110 1.53962 1.25130 1.04510 1.19806 0.92106 0.80909 0.97672 1.22329 0.94377 0.92926 1.55536 0.92760 1.25765 0.98741 1.00048 0.93582 1.70833 1.02031 1.35360 1.45928 0.83564 0.74627 0.75695 0.76691 1.21399 1.21354 1.20649 1.20440 0.80246 0.83463 0.84681 1.90511 1.39678 1.28170 1.86698 1.21239 0.96067 1.02204 0.92895 0.88088 1.21711 0.93524 1.00982 0.99047 1.21543 0.99393 1.00081 0.93916 1.21110 0.95246 0.96093 0.97881 0.91686 1.21993 1.00645 0.96214 1.02052 1.21162 0.94644 1.00145 0.94781 0.91180 1.21856 1.00589 1.00763 0.97095 1.21374 0.99702 0.99826 0.91815 0.91331 0.93206 0.92275 0.90257 0.93472 0.92678 0.90339 0.93517 0.96366 0.92217 0.90286 0.92048 0.92084 0.91485 0.92826 0.93260 0.91864 0.92905 0.93075 0.92521 0.91322 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.07 37.16 0.34 -2.64 16 2 C 0.15 2.87 3.27 -67.92 -0.22 2.65 16 3 C -0.17 -2.83 9.09 37.16 0.34 -2.50 16 4 N -0.59 -12.39 2.41 -167.47 -0.40 -12.79 16 5 C 0.22 5.02 3.87 -5.20 -0.02 5.00 16 6 C -0.61 -16.09 9.37 -34.44 -0.32 -16.41 16 7 H 0.05 1.48 7.61 -52.49 -0.40 1.08 16 8 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 9 N -0.91 -25.47 13.65 55.43 0.76 -24.72 16 10 Si 1.07 24.20 29.90 -169.99 -5.08 19.12 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.52 10.75 6.38 -10.98 -0.07 10.68 16 15 O -0.57 -12.34 12.29 5.56 0.07 -12.27 16 16 C -0.10 -1.86 1.69 -91.77 -0.15 -2.01 16 17 H 0.10 2.04 7.68 -51.93 -0.40 1.64 16 18 C -0.12 -1.87 4.54 -26.73 -0.12 -1.99 16 19 C -0.11 -1.57 5.45 -26.73 -0.15 -1.72 16 20 C -0.08 -1.06 2.72 -90.62 -0.25 -1.30 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 22 C -0.15 -1.77 8.15 37.16 0.30 -1.47 16 23 C -0.09 -1.18 2.50 -90.62 -0.23 -1.41 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 25 C -0.15 -1.65 8.84 37.16 0.33 -1.32 16 26 C -0.09 -1.41 3.52 -26.73 -0.09 -1.51 16 27 H 0.07 1.34 6.55 -51.93 -0.34 1.00 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.20 7.94 -51.93 -0.41 0.78 16 30 H 0.08 1.54 7.86 -51.93 -0.41 1.13 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.46 5.94 -51.93 -0.31 1.15 16 34 H 0.05 1.08 3.84 -51.93 -0.20 0.88 16 35 H 0.02 0.45 7.89 -51.93 -0.41 0.04 16 36 H 0.27 7.39 7.22 -40.82 -0.29 7.09 16 37 H 0.08 1.41 5.37 -51.93 -0.28 1.13 16 38 H 0.06 0.96 6.43 -51.93 -0.33 0.62 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.82 4.81 -51.93 -0.25 0.57 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 47 H 0.07 1.10 6.32 -51.93 -0.33 0.77 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -28.03 351.36 -8.26 -36.28 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.48 Total: 4.48 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.41 Total: -15.40 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.35 Total: -37.51 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.08 Total: 19.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.03 -8.26 -36.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583243811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.865 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds