Wall clock time and date at job start Tue Mar 31 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 6 6 C 1.53002 * 109.46969 * 299.99553 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00060 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99774 * 7 6 5 9 9 N 1.46500 * 109.47204 * 179.97438 * 7 6 5 10 10 C 1.34773 * 119.99955 * 274.99858 * 9 7 6 11 11 O 1.21282 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99832 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.47257 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47412 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47396 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47563 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99578 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00401 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99848 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00233 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47151 * 60.00567 * 20 18 16 22 22 H 1.48499 * 109.47204 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47290 * 300.00421 * 20 18 16 24 24 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 25 25 H 1.09000 * 109.47486 * 180.02562 * 24 2 1 26 26 C 1.53005 * 109.47159 * 300.00546 * 24 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.47552 * 59.99646 * 5 4 2 33 33 H 1.09004 * 109.47298 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47067 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47312 * 299.99939 * 6 5 4 36 36 H 0.97001 * 119.99882 * 94.99976 * 9 7 6 37 37 H 1.08999 * 109.47354 * 299.99726 * 12 10 9 38 38 H 1.08994 * 109.47297 * 60.00293 * 12 10 9 39 39 H 1.08999 * 109.47218 * 300.00199 * 13 12 10 40 40 H 1.09006 * 109.47018 * 59.99634 * 13 12 10 41 41 H 1.08999 * 109.47289 * 300.00398 * 14 13 12 42 42 H 1.09012 * 109.47027 * 60.00404 * 14 13 12 43 43 H 1.08999 * 109.47356 * 300.00516 * 15 14 13 44 44 H 1.09001 * 109.47016 * 60.00395 * 15 14 13 45 45 H 0.97000 * 120.00190 * 180.02562 * 19 18 16 46 46 H 1.08992 * 109.47061 * 59.99386 * 26 24 2 47 47 H 1.09001 * 109.46812 * 179.97438 * 26 24 2 48 48 H 1.09002 * 109.46935 * 299.99411 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 7 2.0179 -2.8547 2.4455 10 6 1.3406 -3.9113 2.9367 11 8 0.3275 -4.2904 2.3882 12 6 1.8421 -4.6216 4.1675 13 6 0.8980 -5.7757 4.5106 14 6 1.4074 -6.4973 5.7598 15 6 0.4630 -7.6510 6.1032 16 6 0.9645 -8.3614 7.3340 17 1 1.8664 -8.0235 7.8227 18 6 0.2714 -9.4420 7.8369 19 7 -0.8272 -9.8531 7.2421 20 14 0.8934 -10.3230 9.3621 21 1 0.9439 -9.3688 10.4988 22 1 -0.0234 -11.4426 9.6954 23 1 2.2543 -10.8582 9.1042 24 6 2.0400 -0.7212 1.2493 25 1 3.1300 -0.7208 1.2495 26 6 1.5299 0.0001 2.4985 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6768 -0.2074 -2.1391 31 1 3.1300 -0.7209 -1.2494 32 1 0.4400 -2.1638 -1.2492 33 1 1.8931 -2.6775 -2.1394 34 1 1.6764 -3.9125 0.0003 35 1 3.1301 -2.8850 0.0001 36 1 2.8283 -2.5517 2.8840 37 1 2.8413 -5.0141 3.9788 38 1 1.8784 -3.9212 5.0018 39 1 -0.1015 -5.3838 4.6992 40 1 0.8620 -6.4761 3.6761 41 1 2.4068 -6.8893 5.5708 42 1 1.4436 -5.7971 6.5945 43 1 -0.5361 -7.2586 6.2923 44 1 0.4264 -8.3512 5.2687 45 1 -1.3151 -10.6131 7.5960 46 1 0.4400 0.0001 2.4984 47 1 1.8929 -0.5140 3.3885 48 1 1.8933 1.0278 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:23 Heat of formation + Delta-G solvation = -93.474658 kcal Electronic energy + Delta-G solvation = -22295.073580 eV Core-core repulsion = 19154.612010 eV Total energy + Delta-G solvation = -3140.461569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.53816 -38.81112 -34.95769 -34.44723 -33.09267 -32.59477 -30.81157 -29.42739 -27.67175 -26.13802 -25.38198 -22.95773 -21.89069 -21.48875 -20.30289 -19.93357 -18.79139 -16.78343 -16.60299 -16.10448 -15.64517 -15.34799 -14.85208 -14.45503 -14.36662 -14.17753 -14.01702 -13.55238 -13.36175 -12.83240 -12.64997 -12.52468 -12.29624 -12.17954 -11.83197 -11.65968 -11.64467 -11.57096 -11.46556 -11.02854 -10.94320 -10.74517 -10.59796 -10.51424 -10.48638 -10.37109 -10.25152 -9.69021 -9.57560 -9.17962 -9.03258 -8.95587 -8.27899 -5.92814 -3.95351 2.80643 3.18234 3.36842 3.41095 3.43422 4.24311 4.36020 4.45750 4.50972 4.73432 4.84652 4.96468 5.01488 5.04262 5.10295 5.12970 5.27272 5.33800 5.39424 5.41635 5.43439 5.49242 5.50081 5.59649 5.66545 5.71903 5.75820 5.84863 5.88392 5.92586 5.94989 6.03832 6.07054 6.18248 6.24847 6.35222 6.48171 6.59850 6.88169 7.06280 7.23603 7.53378 7.76577 7.93304 8.08873 8.35927 8.50591 9.12241 9.68061 11.18525 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.042019 B = 0.002444 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.206961 B =11455.288783 C =11642.019333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.130 4.130 7 C 0.148 3.852 8 H 0.090 0.910 9 N -0.734 5.734 10 C 0.512 3.488 11 O -0.536 6.536 12 C -0.139 4.139 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.053 0.947 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.093 4.093 25 H 0.073 0.927 26 C -0.150 4.150 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 23.091 -16.281 29.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.101 4.101 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.169 4.169 7 C 0.043 3.957 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.300 3.700 11 O -0.412 6.412 12 C -0.179 4.179 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.112 4.112 25 H 0.091 0.909 26 C -0.207 4.207 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.231 0.769 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.185 22.665 -16.656 29.030 hybrid contribution 0.766 -0.400 1.055 1.364 sum 7.951 22.265 -15.601 28.326 Atomic orbital electron populations 1.22040 0.95114 1.02557 1.01718 1.21075 0.96206 0.98947 0.93851 0.90966 1.21600 1.00519 0.95783 0.97442 1.21538 1.01369 0.95283 0.97521 1.21929 1.00717 1.00111 0.94118 1.21008 1.00209 0.90205 0.84248 0.89183 1.46178 1.29502 1.32910 1.29997 1.21069 0.83577 0.79582 0.85797 1.90696 1.24822 1.64818 1.60828 1.21794 1.01819 0.99331 0.94988 1.21440 0.98061 0.95188 0.99385 1.21648 0.99924 0.98558 0.94650 1.19090 0.94342 0.92040 0.96231 1.21253 1.09688 1.13544 1.11395 0.92826 1.25043 0.95033 0.97268 0.97240 1.69967 1.16721 1.26483 1.40342 0.86669 0.78623 0.79236 0.83513 1.20291 1.21327 1.20295 1.21395 1.00400 0.93902 0.95475 0.90850 1.21894 1.01851 0.99893 0.97098 0.91804 0.92749 0.92329 0.91890 0.91993 0.91405 0.91875 0.91280 0.91997 0.76911 0.89279 0.89281 0.91856 0.91868 0.93525 0.93528 0.96609 0.96611 0.92997 0.92141 0.92419 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.15 37.16 0.30 -0.81 16 2 C -0.08 -0.53 2.72 -90.63 -0.25 -0.78 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.12 -0.74 5.45 -26.74 -0.15 -0.89 16 5 C -0.12 -0.93 5.65 -26.73 -0.15 -1.08 16 6 C -0.13 -1.23 5.49 -26.73 -0.15 -1.37 16 7 C 0.15 1.41 1.62 -67.93 -0.11 1.30 16 8 H 0.09 1.08 5.86 -51.93 -0.30 0.77 16 9 N -0.73 -7.41 4.38 -53.81 -0.24 -7.64 16 10 C 0.51 7.18 7.79 -10.99 -0.09 7.10 16 11 O -0.54 -9.81 15.64 5.56 0.09 -9.73 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 14 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.82 13.29 55.43 0.74 -27.08 16 20 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.09 -0.66 2.07 -90.61 -0.19 -0.84 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 C -0.15 -1.07 8.68 37.16 0.32 -0.74 16 27 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.40 2.94 8.39 -40.82 -0.34 2.59 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 47 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -33.17 366.88 -9.33 -42.50 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -9.01 Total: -2.48 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.42 Total: -18.18 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.50 Total: -34.73 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.17 -9.33 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.975 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds