Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46843 * 2 1 4 4 C 1.53003 * 109.46897 * 240.00341 * 2 1 3 5 5 C 1.53002 * 109.46897 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47201 * 59.99589 * 5 4 2 7 7 C 1.52999 * 109.47179 * 300.00021 * 6 5 4 8 8 H 1.08997 * 109.46828 * 299.99992 * 7 6 5 9 9 C 1.53006 * 109.46811 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.46995 * 65.00061 * 9 7 6 11 11 C 1.34776 * 119.99846 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99940 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.53006 * 109.47184 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47127 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47188 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00218 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99966 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99729 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00167 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47149 * 90.00120 * 21 19 17 23 23 H 1.48501 * 109.47501 * 210.00465 * 21 19 17 24 24 H 1.48501 * 109.46930 * 330.00484 * 21 19 17 25 25 C 1.52996 * 109.47201 * 119.99930 * 2 1 3 26 26 H 1.09007 * 109.47221 * 299.99571 * 1 2 3 27 27 H 1.09002 * 109.47423 * 59.99878 * 1 2 3 28 28 H 1.08997 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46651 * 299.99693 * 4 2 1 30 30 H 1.09002 * 109.47262 * 59.99682 * 4 2 1 31 31 H 1.08998 * 109.46646 * 179.97438 * 5 4 2 32 32 H 1.09001 * 109.46843 * 299.99659 * 5 4 2 33 33 H 1.08998 * 109.46746 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47165 * 60.00267 * 6 5 4 35 35 H 1.09001 * 109.46801 * 304.99916 * 9 7 6 36 36 H 1.09001 * 109.47002 * 184.99763 * 9 7 6 37 37 H 0.96998 * 120.00192 * 0.02562 * 10 9 7 38 38 H 1.09001 * 109.47612 * 59.99945 * 13 11 10 39 39 H 1.09001 * 109.47122 * 299.99777 * 13 11 10 40 40 H 1.09001 * 109.47002 * 299.99404 * 14 13 11 41 41 H 1.08993 * 109.46955 * 59.99842 * 14 13 11 42 42 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 43 43 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 44 44 H 1.09001 * 109.46997 * 299.99574 * 16 15 14 45 45 H 1.08992 * 109.47534 * 59.99520 * 16 15 14 46 46 H 0.96996 * 119.99717 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.47165 * 60.00267 * 25 2 1 48 48 H 1.08994 * 109.47129 * 300.00318 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7202 1.2488 8 1 3.9335 0.3075 1.2485 9 6 4.0817 -1.4408 2.4980 10 7 5.5416 -1.3363 2.5590 11 6 6.2156 -1.9012 3.5804 12 8 5.6133 -2.4956 4.4493 13 6 7.7174 -1.7932 3.6435 14 6 8.2285 -2.5139 4.8926 15 6 9.7533 -2.4048 4.9563 16 6 10.2644 -3.1260 6.2051 17 6 11.7662 -3.0180 6.2682 18 1 12.3025 -2.4884 5.4947 19 6 12.4557 -3.5964 7.3128 20 7 13.7664 -3.5025 7.3676 21 14 11.5283 -4.5130 8.6502 22 1 11.3981 -5.9430 8.2713 23 1 12.2723 -4.4061 9.9310 24 1 10.1770 -3.9188 8.8117 25 6 2.0400 -0.7212 1.2492 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6766 -1.7488 -1.2493 30 1 1.6766 -0.2073 -2.1393 31 1 3.9332 -1.2348 -2.1394 32 1 3.9329 0.3072 -1.2499 33 1 5.1705 -1.4414 -0.0010 34 1 3.7176 -2.4693 -0.0002 35 1 3.7940 -2.4913 2.4547 36 1 3.6472 -0.9813 3.3859 37 1 6.0233 -0.8606 1.8643 38 1 8.0047 -0.7427 3.6875 39 1 8.1522 -2.2519 2.7554 40 1 7.7937 -2.0547 5.7805 41 1 7.9413 -3.5644 4.8491 42 1 10.1878 -2.8642 4.0685 43 1 10.0409 -1.3543 4.9996 44 1 9.8300 -2.6670 7.0932 45 1 9.9768 -4.1764 6.1614 46 1 14.2514 -3.9091 8.1026 47 1 1.6767 -1.7489 1.2492 48 1 1.6767 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588153336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = -100.399553 kcal Electronic energy + Delta-G solvation = -21515.736371 eV Core-core repulsion = 18374.974515 eV Total energy + Delta-G solvation = -3140.761855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05711 -39.05394 -35.46444 -34.86200 -32.80543 -32.53517 -31.68543 -30.05944 -26.91197 -26.67642 -25.11532 -22.53469 -22.09251 -20.89639 -20.41689 -19.99189 -19.94017 -16.89956 -16.57775 -16.10024 -15.90802 -15.55852 -15.01080 -14.84937 -14.38823 -14.19246 -14.03603 -13.82641 -13.52071 -12.92962 -12.81449 -12.62531 -12.41104 -12.21731 -12.17248 -11.98825 -11.78062 -11.72192 -11.44989 -11.26656 -11.08144 -10.87465 -10.70801 -10.58183 -10.50939 -10.42283 -9.93245 -9.78435 -9.62127 -9.38121 -9.15365 -9.09551 -8.47401 -5.98743 -3.96010 2.72636 3.13190 3.36930 3.43793 3.50217 4.14986 4.21871 4.27976 4.51932 4.60118 4.69477 4.79590 4.89757 4.93599 5.02730 5.05916 5.19313 5.22151 5.26080 5.29366 5.33703 5.36654 5.38830 5.45910 5.55164 5.57908 5.61868 5.74611 5.78701 5.81734 5.81944 5.88557 5.90946 6.06438 6.07688 6.18954 6.33098 6.45576 6.71603 6.85704 7.02041 7.40801 7.43681 7.53637 7.86916 8.26426 8.60388 9.06331 9.64722 11.14746 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.048087 B = 0.002157 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.141933 B =12977.793589 C =13366.560224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.098 4.098 8 H 0.076 0.924 9 C 0.123 3.877 10 N -0.737 5.737 11 C 0.511 3.489 12 O -0.539 6.539 13 C -0.139 4.139 14 C -0.106 4.106 15 C -0.103 4.103 16 C -0.016 4.016 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 C -0.107 4.107 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.016 0.984 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.066 0.934 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.495 8.446 -19.407 33.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.117 4.117 8 H 0.095 0.905 9 C -0.001 4.001 10 N -0.391 5.391 11 C 0.298 3.702 12 O -0.415 6.415 13 C -0.179 4.179 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.788 7.954 -18.653 33.598 hybrid contribution -0.102 -0.262 0.362 0.458 sum -26.890 7.692 -18.291 33.419 Atomic orbital electron populations 1.21836 0.95204 1.01869 1.01663 1.21121 0.95430 0.99613 0.94809 0.91224 1.21612 0.95534 1.00728 0.97398 1.21536 0.95651 1.00776 0.97788 1.21615 1.00414 0.99562 0.93739 1.21417 0.96218 0.99985 0.94083 0.90513 1.21355 0.80360 1.00814 0.97558 1.46111 1.07511 1.58024 1.27426 1.21074 0.90750 0.77659 0.80696 1.90699 1.70650 1.41743 1.38384 1.21773 0.90416 1.03490 1.02228 1.21476 0.97170 1.00367 0.95386 1.21478 0.91813 1.00658 1.00080 1.19579 0.96899 0.95279 0.93574 1.21191 0.90086 1.34831 1.09574 0.91114 1.25050 0.94740 0.95950 0.97932 1.69925 1.06526 1.45696 1.32402 0.86768 0.80539 0.80528 0.81431 1.20323 1.21466 1.18903 1.21574 0.93837 1.01227 0.97836 0.92650 0.92740 0.92669 0.91955 0.92130 0.91916 0.91965 0.91818 0.91682 0.91657 0.91675 0.76672 0.89051 0.89056 0.91826 0.91840 0.92883 0.92852 0.96617 0.97052 0.92845 0.91557 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 2 C -0.09 -0.48 2.72 -90.62 -0.25 -0.73 16 3 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.12 -0.60 5.20 -26.73 -0.14 -0.74 16 5 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 6 C -0.12 -0.69 5.08 -26.73 -0.14 -0.83 16 7 C -0.10 -0.61 2.23 -90.59 -0.20 -0.82 16 8 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 9 C 0.12 1.10 5.07 -4.04 -0.02 1.08 16 10 N -0.74 -7.11 5.28 -60.29 -0.32 -7.43 16 11 C 0.51 6.94 7.83 -10.99 -0.09 6.86 16 12 O -0.54 -9.69 15.98 5.56 0.09 -9.60 16 13 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 14 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 15 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 16 C -0.02 -0.40 4.04 -27.89 -0.11 -0.51 16 17 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.06 1.92 5.47 -17.81 -0.10 1.82 16 20 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 21 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 25 C -0.11 -0.63 4.49 -26.71 -0.12 -0.75 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 2.75 7.66 -40.82 -0.31 2.44 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.16 8.10 -51.93 -0.42 0.73 16 41 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 45 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -33.79 374.36 -9.70 -43.49 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -9.49 Total: -4.79 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.73 Total: -17.43 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.46 Total: -35.23 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.79 -9.70 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.906 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds