Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47390 * 2 1 4 4 C 1.53008 * 109.47079 * 240.00648 * 2 1 3 5 5 C 1.53000 * 109.46668 * 299.99868 * 4 2 1 6 6 C 1.52997 * 109.47341 * 299.99772 * 5 4 2 7 7 C 1.53004 * 109.47236 * 60.00158 * 6 5 4 8 8 H 1.09004 * 109.46741 * 59.99889 * 7 6 5 9 9 C 1.52997 * 109.47236 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.46983 * 295.00225 * 9 7 6 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99861 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00050 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00180 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47117 * 90.00278 * 21 19 17 23 23 H 1.48501 * 109.47010 * 210.00349 * 21 19 17 24 24 H 1.48506 * 109.47147 * 329.99935 * 21 19 17 25 25 C 1.53000 * 109.46826 * 300.00157 * 7 6 5 26 26 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46786 * 299.99357 * 1 2 3 28 28 H 1.09000 * 109.47264 * 59.99534 * 1 2 3 29 29 H 1.08994 * 109.47037 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.46932 * 59.99362 * 4 2 1 31 31 H 1.09002 * 109.46818 * 179.97438 * 5 4 2 32 32 H 1.09004 * 109.47242 * 60.00254 * 5 4 2 33 33 H 1.09004 * 109.47346 * 300.00418 * 6 5 4 34 34 H 1.09001 * 109.47630 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46832 * 175.00042 * 9 7 6 36 36 H 1.09002 * 109.47153 * 55.00233 * 9 7 6 37 37 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 38 38 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 39 39 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 40 40 H 1.09002 * 109.47153 * 299.99998 * 14 13 11 41 41 H 1.08998 * 109.47533 * 59.99628 * 14 13 11 42 42 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 43 43 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 44 44 H 1.09002 * 109.47153 * 300.00216 * 16 15 14 45 45 H 1.09001 * 109.47289 * 60.00300 * 16 15 14 46 46 H 0.97000 * 120.00500 * 180.02562 * 20 19 17 47 47 H 1.09006 * 109.46596 * 179.97438 * 25 7 6 48 48 H 1.08994 * 109.47725 * 299.99692 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5300 -2.1636 -1.2494 6 6 2.0400 -2.8850 -0.0003 7 6 1.5301 -2.1639 1.2491 8 1 0.4401 -2.1639 1.2491 9 6 2.0396 -2.8856 2.4982 10 7 1.4550 -4.2275 2.5594 11 6 1.7627 -5.0505 3.5814 12 8 2.5239 -4.6805 4.4501 13 6 1.1617 -6.4311 3.6442 14 6 1.6712 -7.1528 4.8933 15 6 1.0606 -8.5541 4.9574 16 6 1.5706 -9.2761 6.2063 17 6 0.9696 -10.6567 6.2690 18 1 0.2915 -10.9861 5.4957 19 6 1.2848 -11.4988 7.3142 20 7 0.7608 -12.7039 7.3687 21 14 2.4572 -10.9289 8.6521 22 1 1.6866 -10.2734 9.7392 23 1 3.1892 -12.0989 9.2003 24 1 3.4279 -9.9612 8.0804 25 6 2.0402 -0.7214 1.2491 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.1300 -0.7215 -1.2492 30 1 1.6766 -0.2072 -2.1393 31 1 1.8929 -2.6773 -2.1397 32 1 0.4400 -2.1636 -1.2494 33 1 3.1301 -2.8850 -0.0003 34 1 1.6771 -3.9128 -0.0005 35 1 1.7513 -2.3227 3.3860 36 1 3.1259 -2.9642 2.4547 37 1 0.8459 -4.5233 1.8649 38 1 0.0754 -6.3529 3.6870 39 1 1.4508 -6.9939 2.7566 40 1 2.7575 -7.2310 4.8502 41 1 1.3825 -6.5902 5.7812 42 1 -0.0257 -8.4756 5.0008 43 1 1.3490 -9.1170 4.0697 44 1 2.6568 -9.3547 6.1624 45 1 1.2825 -8.7134 7.0943 46 1 0.9821 -13.2963 8.1042 47 1 1.6765 -0.2075 2.1390 48 1 3.1301 -0.7213 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588153338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = -95.981860 kcal Electronic energy + Delta-G solvation = -21692.825312 eV Core-core repulsion = 18552.255022 eV Total energy + Delta-G solvation = -3140.570290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18926 -39.20555 -35.43653 -34.84523 -32.60829 -32.20951 -31.68247 -30.05099 -27.22028 -26.73270 -25.11525 -22.80507 -22.15544 -21.37559 -20.21670 -19.99214 -18.99500 -17.01015 -16.60998 -16.07335 -15.99222 -15.66164 -15.09290 -14.79352 -14.34809 -14.24535 -14.10308 -13.69697 -13.51881 -13.07541 -12.73253 -12.62870 -12.48181 -12.14548 -12.04639 -11.97627 -11.88558 -11.72174 -11.45897 -11.34113 -11.08189 -10.70833 -10.68841 -10.50901 -10.46453 -10.40436 -9.92936 -9.78288 -9.62132 -9.38051 -9.15031 -9.09518 -8.47416 -5.98673 -3.95976 2.72815 3.13795 3.36994 3.43840 3.50249 4.18088 4.22719 4.25749 4.51952 4.64729 4.73638 4.79846 4.90362 4.92474 4.96232 5.07741 5.13284 5.26239 5.26876 5.30708 5.35316 5.37430 5.40513 5.49017 5.56398 5.59212 5.60844 5.74207 5.77966 5.82750 5.82954 5.89992 5.94762 6.06513 6.09958 6.19014 6.33445 6.45652 6.71621 6.85744 7.02057 7.40803 7.43896 7.53648 7.86912 8.26626 8.60395 9.06357 9.64765 11.14791 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.045557 B = 0.002217 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.461142 B =12626.211079 C =12896.070901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.100 4.100 8 H 0.080 0.920 9 C 0.123 3.877 10 N -0.737 5.737 11 C 0.511 3.489 12 O -0.539 6.539 13 C -0.139 4.139 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.016 4.016 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 C -0.107 4.107 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 27.352 -19.439 33.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.119 4.119 8 H 0.098 0.902 9 C -0.001 4.001 10 N -0.391 5.391 11 C 0.298 3.702 12 O -0.415 6.415 13 C -0.179 4.179 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.145 4.145 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.842 27.460 -18.690 33.227 hybrid contribution 0.259 0.041 0.390 0.470 sum 1.101 27.501 -18.300 33.052 Atomic orbital electron populations 1.21955 0.95281 1.02172 1.01516 1.21085 0.95986 0.99064 0.94810 0.91243 1.21575 1.00591 0.95706 0.97416 1.21573 1.01038 0.95577 0.97722 1.21607 1.01127 0.98784 0.93756 1.21445 1.01161 0.95216 0.94030 0.90193 1.21360 0.98349 0.82804 0.97604 1.46109 1.49994 1.15573 1.27378 1.21074 0.81061 0.87348 0.80700 1.90698 1.35717 1.76649 1.38410 1.21772 1.01864 0.92038 1.02235 1.21474 1.00975 0.96570 0.95382 1.21475 0.99541 0.92900 1.00095 1.19581 0.96459 0.95970 0.93320 1.21188 1.27845 0.97040 1.09582 0.91115 1.25051 0.95900 0.94773 0.97966 1.69923 1.44706 1.07576 1.32351 0.86768 0.81862 0.78335 0.82298 1.20325 1.21472 1.18899 1.21530 1.00886 0.94228 0.97860 0.91983 0.92779 0.92899 0.92005 0.92130 0.92036 0.91636 0.91723 0.91855 0.91702 0.91692 0.76693 0.89059 0.89059 0.91831 0.91842 0.92884 0.92862 0.96620 0.97057 0.92842 0.91623 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.50 37.16 0.32 -0.45 16 2 C -0.09 -0.48 3.19 -90.61 -0.29 -0.77 16 3 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 4 C -0.12 -0.59 5.45 -26.73 -0.15 -0.74 16 5 C -0.12 -0.64 5.65 -26.73 -0.15 -0.79 16 6 C -0.12 -0.68 5.08 -26.73 -0.14 -0.82 16 7 C -0.10 -0.62 1.95 -90.62 -0.18 -0.80 16 8 H 0.08 0.48 6.43 -51.93 -0.33 0.15 16 9 C 0.12 1.10 5.07 -4.04 -0.02 1.08 16 10 N -0.74 -7.09 5.28 -60.30 -0.32 -7.41 16 11 C 0.51 6.94 7.83 -10.98 -0.09 6.85 16 12 O -0.54 -9.68 15.98 5.56 0.09 -9.60 16 13 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 14 C -0.11 -1.82 4.50 -26.74 -0.12 -1.94 16 15 C -0.10 -2.05 5.15 -26.74 -0.14 -2.18 16 16 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 17 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 21 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 25 C -0.11 -0.63 4.73 -26.73 -0.13 -0.75 16 26 H 0.06 0.32 4.81 -51.93 -0.25 0.07 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.34 6.43 -51.93 -0.33 0.00 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 2.75 7.66 -40.82 -0.31 2.43 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 45 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -33.80 367.32 -9.50 -43.30 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -9.14 Total: -4.42 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.78 Total: -17.51 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.46 Total: -35.22 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.80 -9.50 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.679 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds