Wall clock time and date at job start Tue Mar 31 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46322 * 2 1 4 4 C 1.52997 * 109.47530 * 119.99964 * 2 1 3 5 5 C 1.52999 * 109.46991 * 59.99990 * 4 2 1 6 6 C 1.53006 * 109.46626 * 60.00378 * 5 4 2 7 7 C 1.52997 * 109.47127 * 299.99539 * 6 5 4 8 8 C 1.52996 * 109.47467 * 240.00437 * 2 1 3 9 9 H 1.08996 * 109.47452 * 179.97438 * 8 2 1 10 10 C 1.52997 * 109.47131 * 59.99284 * 8 2 1 11 11 N 1.46503 * 109.47269 * 175.00211 * 10 8 2 12 12 C 1.34776 * 120.00408 * 179.97438 * 11 10 8 13 13 O 1.21285 * 119.99470 * 0.02562 * 12 11 10 14 14 C 1.50691 * 120.00154 * 179.97438 * 12 11 10 15 15 C 1.53005 * 109.47340 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47478 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47153 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47011 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99790 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99722 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99950 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99796 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47049 * 59.99968 * 22 20 18 24 24 H 1.48503 * 109.47080 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46798 * 300.00234 * 22 20 18 26 26 H 1.09001 * 109.46322 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47347 * 299.99610 * 1 2 3 28 28 H 1.08999 * 109.47550 * 60.00660 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00544 * 4 2 1 30 30 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 31 31 H 1.08993 * 109.47839 * 300.00447 * 5 4 2 32 32 H 1.09000 * 109.47160 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.46801 * 59.99811 * 6 5 4 34 34 H 1.09001 * 109.46998 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 37 37 H 1.09001 * 109.47630 * 295.00237 * 10 8 2 38 38 H 1.09002 * 109.47196 * 55.00332 * 10 8 2 39 39 H 0.97002 * 119.99507 * 0.02562 * 11 10 8 40 40 H 1.09001 * 109.47692 * 299.99884 * 14 12 11 41 41 H 1.09005 * 109.47346 * 60.00778 * 14 12 11 42 42 H 1.09009 * 109.46625 * 300.00366 * 15 14 12 43 43 H 1.08993 * 109.47197 * 59.99854 * 15 14 12 44 44 H 1.09001 * 109.46685 * 300.00061 * 16 15 14 45 45 H 1.09002 * 109.47159 * 59.99555 * 16 15 14 46 46 H 1.09003 * 109.47402 * 300.00275 * 17 16 15 47 47 H 1.09002 * 109.47196 * 59.99890 * 17 16 15 48 48 H 0.97005 * 119.99502 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5302 -2.1637 1.2492 6 6 2.0403 -2.8849 -0.0001 7 6 1.5302 -2.1637 -1.2493 8 6 2.0401 -0.7211 -1.2492 9 1 3.1301 -0.7207 -1.2495 10 6 1.5300 0.0001 -2.4984 11 7 2.1142 -0.6174 -3.6916 12 6 1.8052 -0.1443 -4.9152 13 8 1.0439 0.7930 -5.0284 14 6 2.4066 -0.7791 -6.1425 15 6 1.8964 -0.0580 -7.3918 16 6 2.5065 -0.7030 -8.6379 17 6 1.9958 0.0177 -9.8871 18 6 2.5972 -0.6171 -11.1145 19 1 3.2754 -1.4515 -11.0135 20 6 2.2815 -0.1327 -12.3662 21 7 1.4559 0.8836 -12.4889 22 14 3.0264 -0.9201 -13.8876 23 1 2.6337 -2.3510 -13.9470 24 1 2.5317 -0.2197 -15.1000 25 1 4.5064 -0.8152 -13.8250 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6767 -0.2074 2.1392 30 1 3.1301 -0.7208 1.2494 31 1 0.4402 -2.1639 1.2492 32 1 1.8932 -2.6774 2.1394 33 1 3.1303 -2.8847 0.0000 34 1 1.6774 -3.9127 0.0001 35 1 1.8932 -2.6777 -2.1393 36 1 0.4402 -2.1638 -1.2492 37 1 0.4437 -0.0769 -2.5444 38 1 1.8183 1.0504 -2.4548 39 1 2.7228 -1.3673 -3.6010 40 1 3.4929 -0.7013 -6.0967 41 1 2.1190 -1.8297 -6.1862 42 1 0.8101 -0.1355 -7.4378 43 1 2.1842 0.9923 -7.3480 44 1 3.5928 -0.6259 -8.5920 45 1 2.2183 -1.7533 -8.6815 46 1 0.9095 -0.0597 -9.9328 47 1 2.2836 1.0682 -9.8438 48 1 1.2341 1.2246 -13.3696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588153947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:53 Heat of formation + Delta-G solvation = -97.376305 kcal Electronic energy + Delta-G solvation = -21766.818433 eV Core-core repulsion = 18626.187676 eV Total energy + Delta-G solvation = -3140.630758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.25670 -39.13856 -35.18472 -34.66899 -32.65132 -32.46420 -31.40365 -29.66131 -27.56874 -26.17146 -24.97269 -22.78169 -22.28756 -21.46568 -20.27434 -19.92486 -18.76894 -16.88575 -16.31482 -16.06131 -15.96321 -15.71017 -15.03915 -14.52416 -14.49761 -14.37609 -13.95506 -13.58089 -13.24789 -13.06599 -12.95904 -12.56879 -12.29592 -12.10866 -11.93584 -11.78284 -11.63931 -11.56511 -11.45318 -11.21536 -10.94111 -10.60674 -10.51880 -10.48646 -10.46319 -10.37048 -10.33791 -9.74186 -9.57460 -9.18388 -9.07660 -8.95715 -8.27718 -5.92585 -3.95069 2.79966 3.19723 3.37003 3.41223 3.43576 4.19617 4.26352 4.30529 4.51012 4.72384 4.78283 4.85132 4.92182 4.95629 5.01427 5.07368 5.19990 5.28150 5.36062 5.37276 5.41635 5.43126 5.46564 5.56388 5.60373 5.62358 5.70159 5.73285 5.81498 5.87508 5.91989 5.92786 5.98963 6.16838 6.18420 6.34868 6.40536 6.59370 6.88270 7.06377 7.23693 7.50288 7.76808 7.93481 8.09056 8.33768 8.50782 9.12456 9.68242 11.18681 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.047408 B = 0.002172 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.474990 B =12890.790697 C =13260.342781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.093 4.093 9 H 0.076 0.924 10 C 0.122 3.878 11 N -0.738 5.738 12 C 0.510 3.490 13 O -0.537 6.537 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 -6.555 30.648 31.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.112 4.112 9 H 0.094 0.906 10 C -0.002 4.002 11 N -0.392 5.392 12 C 0.298 3.702 13 O -0.413 6.413 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.074 -5.742 30.427 30.982 hybrid contribution 0.708 -0.747 -0.808 1.309 sum 1.783 -6.489 29.618 30.373 Atomic orbital electron populations 1.22026 0.95076 1.02283 1.01941 1.21039 0.96225 0.99127 0.93823 0.90972 1.21549 1.00523 0.95664 0.97344 1.21583 1.01118 0.95595 0.97700 1.21525 1.00732 0.98840 0.94549 1.21650 1.01422 0.94615 0.97840 1.21404 1.00647 0.95327 0.93817 0.90573 1.21425 0.98526 0.96957 0.83310 1.46131 1.50060 1.37024 1.05956 1.21088 0.81096 0.83402 0.84643 1.90704 1.35621 1.28229 1.86715 1.21791 1.01726 1.01313 0.93064 1.21446 1.00988 0.99634 0.92045 1.21649 0.99109 0.99198 0.94826 1.19095 0.96447 0.95618 0.90579 1.21250 1.27253 1.16060 0.91307 0.92818 1.25050 0.95310 0.95137 0.99129 1.69968 1.34961 1.25055 1.23481 0.86667 0.79496 0.79417 0.82440 1.20295 1.21334 1.20301 0.91949 0.92759 0.92210 0.91939 0.92008 0.91638 0.92266 0.92045 0.92029 0.91888 0.91328 0.91357 0.91758 0.76778 0.89234 0.89235 0.91847 0.91840 0.93507 0.93509 0.96599 0.96598 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.15 37.16 0.30 -0.71 16 2 C -0.08 -0.52 2.72 -90.62 -0.25 -0.76 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -0.62 5.45 -26.73 -0.15 -0.76 16 5 C -0.12 -0.65 5.65 -26.73 -0.15 -0.80 16 6 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 7 C -0.12 -0.74 4.80 -26.73 -0.13 -0.86 16 8 C -0.09 -0.62 2.00 -90.62 -0.18 -0.80 16 9 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 10 C 0.12 1.15 4.56 -4.04 -0.02 1.13 16 11 N -0.74 -7.50 5.28 -60.30 -0.32 -7.82 16 12 C 0.51 7.29 7.83 -10.99 -0.09 7.20 16 13 O -0.54 -10.08 15.98 5.55 0.09 -9.99 16 14 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 15 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 18 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 22 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.06 0.39 4.81 -51.93 -0.25 0.14 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.39 7.18 -51.93 -0.37 0.02 16 36 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 37 H 0.07 0.72 6.71 -51.93 -0.35 0.37 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 2.93 7.65 -40.82 -0.31 2.62 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 43 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -33.49 367.53 -9.77 -43.26 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -9.01 Total: -3.73 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.78 Total: -17.29 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.42 Total: -34.88 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.49 -9.77 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.113 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds