Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47471 * 2 1 4 4 C 1.52997 * 109.46992 * 239.99742 * 2 1 3 5 5 C 1.53003 * 109.46992 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46833 * 60.00128 * 5 4 2 7 7 C 1.52997 * 109.47227 * 299.99728 * 6 5 4 8 8 C 1.53002 * 109.46833 * 119.99870 * 2 1 3 9 9 H 1.09000 * 109.47254 * 60.00287 * 8 2 1 10 10 C 1.52997 * 109.47227 * 299.99728 * 8 2 1 11 11 N 1.46496 * 109.47194 * 174.99954 * 10 8 2 12 12 C 1.34777 * 120.00271 * 179.97438 * 11 10 8 13 13 O 1.21278 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46912 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 H 1.08009 * 120.00339 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00310 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99776 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00473 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47163 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47233 * 120.00015 * 22 20 18 25 25 H 1.48504 * 109.47158 * 239.99855 * 22 20 18 26 26 H 1.09004 * 109.47134 * 300.00154 * 1 2 3 27 27 H 1.08998 * 109.46717 * 59.99900 * 1 2 3 28 28 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47459 * 299.99936 * 4 2 1 30 30 H 1.08998 * 109.47097 * 60.00590 * 4 2 1 31 31 H 1.08996 * 109.47264 * 179.97438 * 5 4 2 32 32 H 1.08993 * 109.47618 * 300.00236 * 5 4 2 33 33 H 1.09000 * 109.47254 * 60.00287 * 6 5 4 34 34 H 1.09001 * 109.46896 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.47132 * 299.99836 * 7 6 5 36 36 H 1.09002 * 109.46840 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47045 * 55.00081 * 10 8 2 38 38 H 1.09001 * 109.47375 * 295.00005 * 10 8 2 39 39 H 0.97005 * 120.00266 * 0.02562 * 11 10 8 40 40 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 41 41 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 42 42 H 1.09001 * 109.47194 * 299.99742 * 15 14 12 43 43 H 1.08992 * 109.47399 * 59.99914 * 15 14 12 44 44 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 45 45 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 46 46 H 1.08992 * 109.47098 * 299.99158 * 17 16 15 47 47 H 1.09001 * 109.47583 * 60.00267 * 17 16 15 48 48 H 0.96998 * 120.00187 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 2.0400 -0.7212 1.2493 9 1 1.6767 -1.7489 1.2493 10 6 1.5300 0.0001 2.4985 11 7 1.9175 -0.7565 3.6916 12 6 1.5744 -0.3075 4.9152 13 8 0.9445 0.7226 5.0285 14 6 1.9735 -1.0856 6.1426 15 6 1.4634 -0.3643 7.3918 16 6 1.8692 -1.1538 8.6380 17 6 1.3585 -0.4329 9.8871 18 6 1.7576 -1.2109 11.1145 19 1 2.3197 -2.1277 11.0138 20 6 1.4062 -0.7519 12.3662 21 7 0.7231 0.3652 12.4891 22 14 1.9015 -1.7159 13.8877 23 1 2.6598 -2.9264 13.4816 24 1 2.7552 -0.8659 14.7561 25 1 0.6839 -2.1213 14.6350 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6767 -1.7490 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.9334 -1.2350 -2.1392 32 1 3.9330 0.3070 -1.2497 33 1 3.7175 -2.4694 0.0000 34 1 5.1705 -1.4416 -0.0007 35 1 3.9335 0.3074 1.2487 36 1 3.9346 -1.2337 2.1390 37 1 0.4437 0.0783 2.4548 38 1 1.9647 0.9986 2.5444 39 1 2.4216 -1.5803 3.6011 40 1 3.0599 -1.1638 6.1859 41 1 1.5389 -2.0841 6.0971 42 1 1.8977 0.6344 7.4375 43 1 0.3772 -0.2864 7.3483 44 1 1.4351 -2.1527 8.5925 45 1 2.9556 -1.2314 8.6813 46 1 1.7922 0.5660 9.9329 47 1 0.2721 -0.3558 9.8437 48 1 0.4755 0.6880 13.3697 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588153948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = -101.158708 kcal Electronic energy + Delta-G solvation = -21684.838057 eV Core-core repulsion = 18544.043282 eV Total energy + Delta-G solvation = -3140.794775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.10742 -39.00718 -35.16456 -34.66390 -33.12907 -32.59324 -31.41417 -29.65573 -27.29160 -26.07692 -24.98332 -22.60868 -21.81188 -21.31545 -20.46787 -19.95995 -19.79321 -16.83875 -16.26641 -15.96420 -15.81192 -15.30882 -15.06020 -14.68943 -14.49348 -14.41932 -13.98800 -13.78983 -13.31513 -12.99712 -12.59821 -12.50221 -12.33794 -12.15804 -11.97482 -11.89454 -11.64869 -11.55529 -11.38648 -11.27004 -10.97233 -10.83406 -10.50048 -10.46993 -10.45406 -10.37633 -10.35774 -9.74236 -9.58031 -9.18504 -9.06919 -8.94010 -8.28554 -5.93126 -3.95464 2.79983 3.19650 3.34526 3.41600 3.45686 4.18956 4.25385 4.30700 4.50794 4.65376 4.72771 4.85194 4.96240 5.00035 5.06316 5.07817 5.13182 5.27925 5.36735 5.38261 5.41433 5.42758 5.45911 5.54359 5.58859 5.63383 5.68431 5.76104 5.80316 5.84667 5.90290 5.93441 5.99389 6.11947 6.18307 6.34810 6.40640 6.59314 6.88195 7.06319 7.23569 7.50252 7.77098 7.93258 8.08726 8.33764 8.50523 9.12537 9.68043 11.18240 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.043400 B = 0.002182 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.999333 B =12830.631972 C =13255.818344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.093 4.093 9 H 0.077 0.923 10 C 0.120 3.880 11 N -0.738 5.738 12 C 0.510 3.490 13 O -0.537 6.537 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 -4.302 -30.681 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.112 4.112 9 H 0.095 0.905 10 C -0.004 4.004 11 N -0.392 5.392 12 C 0.298 3.702 13 O -0.413 6.413 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.147 4.147 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.403 -3.424 -30.465 30.971 hybrid contribution 0.491 -0.871 0.820 1.294 sum 4.895 -4.295 -29.644 30.351 Atomic orbital electron populations 1.21945 0.95029 1.02046 1.02116 1.21078 0.95632 0.99685 0.93823 0.90897 1.21584 0.95448 1.00700 0.97322 1.21549 0.95703 1.00825 0.97780 1.21534 1.00258 0.99390 0.94530 1.21625 0.94581 1.01271 0.97897 1.21444 0.95807 1.00125 0.93813 0.90505 1.21456 1.00274 0.95360 0.83295 1.46125 1.59044 1.28029 1.05953 1.21090 0.78714 0.85787 0.84641 1.90702 1.39319 1.24533 1.86711 1.21792 1.02822 1.00215 0.93061 1.21444 1.01353 0.99269 0.92046 1.21649 0.99742 0.98568 0.94822 1.19106 0.96471 0.95628 0.90613 1.21327 1.34704 1.08387 0.91281 0.92710 1.25054 0.95353 0.95120 0.99158 1.69988 1.39031 1.21187 1.23268 0.86553 0.78235 0.80064 0.83231 1.19790 1.21073 1.21067 0.91993 0.92603 0.92609 0.91940 0.91930 0.92134 0.91988 0.91993 0.91990 0.91672 0.91779 0.91230 0.91750 0.76784 0.89236 0.89235 0.91847 0.91839 0.93506 0.93503 0.96583 0.96583 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.85 37.16 0.33 -0.67 16 2 C -0.08 -0.52 2.25 -90.62 -0.20 -0.72 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.62 5.20 -26.73 -0.14 -0.76 16 5 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 6 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 7 C -0.12 -0.73 5.08 -26.70 -0.14 -0.87 16 8 C -0.09 -0.62 1.76 -90.59 -0.16 -0.78 16 9 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 10 C 0.12 1.13 4.85 -4.05 -0.02 1.11 16 11 N -0.74 -7.50 5.28 -60.30 -0.32 -7.82 16 12 C 0.51 7.28 7.83 -10.98 -0.09 7.20 16 13 O -0.54 -10.07 15.98 5.56 0.09 -9.98 16 14 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 15 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 19 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 20 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 22 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.06 0.46 6.32 -51.93 -0.33 0.13 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.39 7.19 -51.93 -0.37 0.02 16 37 H 0.07 0.73 6.17 -51.93 -0.32 0.41 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.40 2.93 7.66 -40.82 -0.31 2.62 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -33.53 374.11 -9.90 -43.43 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -9.33 Total: -4.09 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -1.70 Total: -17.20 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.42 Total: -34.88 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.53 -9.90 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.731 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds