Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47129 * 2 1 4 4 C 1.53005 * 109.46929 * 119.99890 * 2 1 3 5 5 C 1.52992 * 109.47349 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47394 * 300.00039 * 5 4 2 7 7 C 1.53005 * 109.46872 * 59.99293 * 6 5 4 8 8 C 1.52992 * 109.47688 * 300.00527 * 7 6 5 9 9 H 1.09007 * 109.46906 * 300.00512 * 8 7 6 10 10 C 1.52999 * 109.47225 * 180.02562 * 8 7 6 11 11 N 1.46497 * 109.46992 * 64.99918 * 10 8 7 12 12 C 1.34777 * 119.99525 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 10 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.53010 * 109.46712 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46923 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99761 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00086 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00213 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00070 * 0.02562 * 20 18 17 23 23 H 1.48511 * 109.47040 * 89.99858 * 22 20 18 24 24 H 1.48494 * 109.47494 * 209.99837 * 22 20 18 25 25 H 1.48502 * 109.46977 * 330.00565 * 22 20 18 26 26 H 1.09002 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47409 * 300.00162 * 1 2 3 28 28 H 1.09001 * 109.47212 * 60.00323 * 1 2 3 29 29 H 1.09001 * 109.47432 * 59.99498 * 4 2 1 30 30 H 1.09007 * 109.46851 * 300.00110 * 4 2 1 31 31 H 1.09001 * 109.47633 * 179.97438 * 5 4 2 32 32 H 1.09008 * 109.46892 * 59.99874 * 5 4 2 33 33 H 1.09002 * 109.46799 * 300.00187 * 6 5 4 34 34 H 1.08994 * 109.47693 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.46549 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46679 * 60.00820 * 7 6 5 37 37 H 1.08995 * 109.46838 * 304.99806 * 10 8 7 38 38 H 1.09001 * 109.46617 * 185.00141 * 10 8 7 39 39 H 0.97000 * 120.00580 * 0.02562 * 11 10 8 40 40 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 41 41 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 42 42 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 43 43 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 44 44 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 45 45 H 1.09001 * 109.47109 * 60.00906 * 16 15 14 46 46 H 1.08995 * 109.47108 * 300.00413 * 17 16 15 47 47 H 1.09000 * 109.46707 * 60.01096 * 17 16 15 48 48 H 0.96999 * 120.00124 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7208 1.2497 6 6 4.0806 -1.4417 0.0005 7 6 3.5705 -0.7205 -1.2488 8 6 2.0406 -0.7210 -1.2492 9 1 1.6776 -1.7488 -1.2493 10 6 1.5307 -0.0003 -2.4988 11 7 1.9188 -0.7572 -3.6915 12 6 1.5749 -0.3093 -4.9153 13 8 0.9446 0.7206 -5.0291 14 6 1.9795 -1.0846 -6.1426 15 6 1.4739 -0.3613 -7.3925 16 6 1.8852 -1.1482 -8.6384 17 6 1.3790 -0.4252 -9.8883 18 6 1.7847 -1.1998 -11.1157 19 1 2.3469 -2.1164 -11.0143 20 6 1.4381 -0.7385 -12.3678 21 7 1.7917 -1.4148 -13.4389 22 14 0.4662 0.8471 -12.5431 23 1 1.4044 1.9931 -12.6531 24 1 -0.3768 0.7787 -13.7636 25 1 -0.4012 1.0302 -11.3518 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6766 -1.7489 1.2494 30 1 1.6766 -0.2074 2.1393 31 1 3.9333 -1.2342 2.1400 32 1 3.9329 0.3071 1.2499 33 1 3.7175 -2.4695 0.0003 34 1 5.1705 -1.4409 0.0006 35 1 3.9339 -1.2343 -2.1387 36 1 3.9335 0.3073 -1.2485 37 1 1.9649 0.9983 -2.5449 38 1 0.4443 0.0775 -2.4554 39 1 2.4226 -1.5811 -3.6005 40 1 3.0662 -1.1615 -6.1820 41 1 1.5459 -2.0837 -6.1006 42 1 0.3873 -0.2843 -7.3531 43 1 1.9076 0.6378 -7.4344 44 1 2.9718 -1.2247 -8.6776 45 1 1.4518 -2.1474 -8.5967 46 1 0.2924 -0.3489 -9.8489 47 1 1.8122 0.5742 -9.9304 48 1 1.5482 -1.0901 -14.3199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588153949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -97.886648 kcal Electronic energy + Delta-G solvation = -21740.531042 eV Core-core repulsion = 18599.878154 eV Total energy + Delta-G solvation = -3140.652888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -40.15533 -39.05893 -35.26433 -34.76093 -33.15720 -32.56185 -31.47316 -30.03668 -27.39320 -26.24821 -25.09256 -22.51721 -21.72344 -21.33598 -20.47596 -19.99188 -19.83717 -16.92792 -16.59037 -16.10842 -15.88366 -15.33861 -15.10874 -14.73800 -14.52661 -14.20370 -14.04289 -13.87145 -13.39502 -13.04673 -12.63465 -12.58034 -12.42115 -12.21492 -12.08858 -11.99806 -11.92328 -11.72057 -11.41872 -11.29579 -11.08148 -10.85994 -10.70698 -10.50848 -10.48767 -10.38880 -9.92761 -9.78198 -9.62120 -9.37899 -9.12561 -9.09480 -8.47395 -5.98639 -3.95955 2.73092 3.14065 3.36992 3.43868 3.50281 4.15965 4.22538 4.27985 4.51976 4.62432 4.70074 4.81098 4.91701 4.96803 5.03257 5.04866 5.10166 5.24573 5.27542 5.32408 5.35971 5.37351 5.42215 5.50849 5.55839 5.59907 5.65760 5.73393 5.77500 5.82147 5.83429 5.89506 5.95934 6.06615 6.09112 6.19157 6.34205 6.45804 6.71737 6.85801 7.02097 7.40851 7.44286 7.53724 7.86956 8.26969 8.60443 9.06377 9.64822 11.14833 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040681 B = 0.002302 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.124934 B =12159.811198 C =12602.180535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.093 4.093 9 H 0.077 0.923 10 C 0.120 3.880 11 N -0.737 5.737 12 C 0.511 3.489 13 O -0.539 6.539 14 C -0.139 4.139 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.016 4.016 18 C -0.519 4.519 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.906 5.906 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.264 1.264 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.016 0.984 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -0.247 33.147 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.112 4.112 9 H 0.095 0.905 10 C -0.004 4.004 11 N -0.391 5.391 12 C 0.298 3.702 13 O -0.415 6.415 14 C -0.179 4.179 15 C -0.144 4.144 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.556 4.556 19 H 0.089 0.911 20 C -0.137 4.137 21 N -0.546 5.546 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.189 1.189 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.009 0.515 32.868 32.933 hybrid contribution -0.197 0.369 -0.170 0.452 sum 1.812 0.884 32.698 32.760 Atomic orbital electron populations 1.21942 0.95037 1.02055 1.02096 1.21075 0.95616 0.99682 0.93835 0.90909 1.21585 0.95463 1.00708 0.97303 1.21549 0.95686 1.00829 0.97799 1.21535 1.00282 0.99398 0.94499 1.21618 0.94557 1.01269 0.97934 1.21435 0.95844 1.00142 0.93786 0.90489 1.21459 1.00262 0.95353 0.83303 1.46118 1.58929 1.28057 1.05951 1.21069 0.78712 0.85734 0.84668 1.90697 1.39477 1.24565 1.86746 1.21775 1.02955 1.00295 0.92894 1.21476 1.01358 0.99278 0.92282 1.21477 1.00243 0.98660 0.93633 1.19582 0.96247 0.95918 0.93579 1.21187 1.35349 1.09732 0.89383 0.91116 1.25048 0.95631 0.97090 0.95918 1.69923 1.47251 1.39417 0.97969 0.86769 0.80697 0.84140 0.77663 1.20327 1.21471 1.18896 0.92595 0.92599 0.92027 0.91926 0.91924 0.92111 0.91999 0.91968 0.91962 0.91766 0.91679 0.91744 0.91230 0.76710 0.89062 0.89067 0.91830 0.91845 0.92883 0.92863 0.96616 0.97062 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.85 37.16 0.33 -0.62 16 2 C -0.08 -0.50 2.25 -90.62 -0.20 -0.70 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.11 -0.59 5.20 -26.73 -0.14 -0.73 16 5 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 6 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 7 C -0.12 -0.70 5.08 -26.73 -0.14 -0.84 16 8 C -0.09 -0.59 1.75 -90.62 -0.16 -0.75 16 9 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 10 C 0.12 1.08 4.85 -4.04 -0.02 1.06 16 11 N -0.74 -7.13 5.28 -60.30 -0.32 -7.45 16 12 C 0.51 6.94 7.83 -10.98 -0.09 6.85 16 13 O -0.54 -9.67 15.98 5.55 0.09 -9.58 16 14 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 15 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 16 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 17 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 18 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 19 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 20 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 22 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.38 7.18 -51.93 -0.37 0.01 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.70 6.18 -51.93 -0.32 0.38 16 39 H 0.40 2.77 7.65 -40.82 -0.31 2.46 16 40 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 47 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -33.74 370.50 -9.53 -43.26 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -9.29 Total: -4.29 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -1.69 Total: -17.63 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.46 Total: -35.26 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.74 -9.53 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.622 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds