Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47129 * 2 1 4 4 C 1.53005 * 109.46929 * 119.99890 * 2 1 3 5 5 C 1.52992 * 109.47349 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47394 * 300.00039 * 5 4 2 7 7 C 1.53005 * 109.46872 * 59.99293 * 6 5 4 8 8 C 1.52992 * 109.47688 * 300.00527 * 7 6 5 9 9 H 1.09007 * 109.46906 * 300.00512 * 8 7 6 10 10 C 1.52999 * 109.47225 * 180.02562 * 8 7 6 11 11 N 1.46497 * 109.46992 * 64.99918 * 10 8 7 12 12 C 1.34777 * 119.99525 * 179.97438 * 11 10 8 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72583 * 12 11 10 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 11 16 16 C 1.52997 * 109.47000 * 179.97438 * 15 14 12 17 17 C 1.53010 * 109.46712 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46923 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99761 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00086 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00213 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00070 * 0.02562 * 20 18 17 23 23 H 1.48511 * 109.47040 * 89.99858 * 22 20 18 24 24 H 1.48494 * 109.47494 * 209.99837 * 22 20 18 25 25 H 1.48502 * 109.46977 * 330.00565 * 22 20 18 26 26 H 1.09002 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47409 * 300.00162 * 1 2 3 28 28 H 1.09001 * 109.47212 * 60.00323 * 1 2 3 29 29 H 1.09001 * 109.47432 * 59.99498 * 4 2 1 30 30 H 1.09007 * 109.46851 * 300.00110 * 4 2 1 31 31 H 1.09001 * 109.47633 * 179.97438 * 5 4 2 32 32 H 1.09008 * 109.46892 * 59.99874 * 5 4 2 33 33 H 1.09002 * 109.46799 * 300.00187 * 6 5 4 34 34 H 1.08994 * 109.47693 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.46549 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46679 * 60.00820 * 7 6 5 37 37 H 1.08995 * 109.46838 * 304.99806 * 10 8 7 38 38 H 1.09001 * 109.46617 * 185.00141 * 10 8 7 39 39 H 0.97000 * 120.00580 * 0.02562 * 11 10 8 40 40 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 41 41 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 42 42 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 43 43 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 44 44 H 1.08995 * 109.47672 * 299.99669 * 16 15 14 45 45 H 1.09001 * 109.47109 * 60.00906 * 16 15 14 46 46 H 1.08995 * 109.47108 * 300.00413 * 17 16 15 47 47 H 1.09000 * 109.46707 * 60.01096 * 17 16 15 48 48 H 0.96999 * 120.00124 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7208 1.2497 6 6 4.0806 -1.4417 0.0005 7 6 3.5705 -0.7205 -1.2488 8 6 2.0406 -0.7210 -1.2492 9 1 1.6776 -1.7488 -1.2493 10 6 1.5307 -0.0003 -2.4988 11 7 1.9188 -0.7572 -3.6915 12 6 1.5749 -0.3093 -4.9153 13 8 0.9446 0.7206 -5.0291 14 6 1.9795 -1.0846 -6.1426 15 6 1.4739 -0.3613 -7.3925 16 6 1.8852 -1.1482 -8.6384 17 6 1.3790 -0.4252 -9.8883 18 6 1.7847 -1.1998 -11.1157 19 1 2.3469 -2.1164 -11.0143 20 6 1.4381 -0.7385 -12.3678 21 7 1.7917 -1.4148 -13.4389 22 14 0.4662 0.8471 -12.5431 23 1 1.4044 1.9931 -12.6531 24 1 -0.3768 0.7787 -13.7636 25 1 -0.4012 1.0302 -11.3518 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6766 -1.7489 1.2494 30 1 1.6766 -0.2074 2.1393 31 1 3.9333 -1.2342 2.1400 32 1 3.9329 0.3071 1.2499 33 1 3.7175 -2.4695 0.0003 34 1 5.1705 -1.4409 0.0006 35 1 3.9339 -1.2343 -2.1387 36 1 3.9335 0.3073 -1.2485 37 1 1.9649 0.9983 -2.5449 38 1 0.4443 0.0775 -2.4554 39 1 2.4226 -1.5811 -3.6005 40 1 3.0662 -1.1615 -6.1820 41 1 1.5459 -2.0837 -6.1006 42 1 0.3873 -0.2843 -7.3531 43 1 1.9076 0.6378 -7.4344 44 1 2.9718 -1.2247 -8.6776 45 1 1.4518 -2.1474 -8.5967 46 1 0.2924 -0.3489 -9.8489 47 1 1.8122 0.5742 -9.9304 48 1 1.5482 -1.0901 -14.3199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588153949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = -117.784407 kcal Electronic energy + Delta-G solvation = -21741.393874 eV Core-core repulsion = 18599.878154 eV Total energy + Delta-G solvation = -3141.515719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.99528 -39.81083 -36.72753 -35.80034 -34.59726 -33.64285 -32.36541 -31.49376 -28.31436 -27.31355 -26.07210 -23.81859 -22.57080 -21.91596 -21.72720 -21.27100 -20.51381 -18.85153 -17.88337 -17.02366 -16.96386 -16.30521 -15.98243 -15.85217 -15.41477 -15.15748 -14.95077 -14.89449 -14.65280 -14.18024 -13.93785 -13.66441 -13.56015 -13.42668 -13.02349 -12.87017 -12.76183 -12.68664 -12.39992 -12.32837 -12.06783 -11.92038 -11.75569 -11.74848 -11.51135 -11.34400 -11.32189 -11.26159 -11.02404 -10.89341 -10.75962 -10.69108 -10.03210 -8.29612 -6.32556 1.34673 1.36132 1.49150 1.68151 2.25610 2.35923 3.05619 3.63749 3.72647 3.78636 3.89145 4.04753 4.11295 4.16644 4.26091 4.35600 4.46343 4.52593 4.58716 4.61191 4.63961 4.65549 4.70837 4.77997 4.84888 4.86183 4.89914 4.94591 5.07268 5.12073 5.15431 5.20878 5.21559 5.25946 5.29436 5.33545 5.36973 5.42804 5.46648 5.51827 5.61121 5.64066 5.66129 5.68942 6.29663 6.58670 6.75278 7.30424 7.32200 8.86875 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040681 B = 0.002302 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.124934 B =12159.811198 C =12602.180535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.082 4.082 9 H 0.086 0.914 10 C 0.121 3.879 11 N -0.718 5.718 12 C 0.510 3.490 13 O -0.589 6.589 14 C -0.132 4.132 15 C -0.098 4.098 16 C -0.094 4.094 17 C -0.018 4.018 18 C -0.530 4.530 19 H 0.037 0.963 20 C 0.003 3.997 21 N -0.950 5.950 22 Si 0.948 3.052 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.253 1.253 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.415 0.585 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.013 0.987 47 H 0.012 0.988 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -0.330 35.150 35.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.101 4.101 9 H 0.104 0.896 10 C -0.003 4.003 11 N -0.371 5.371 12 C 0.298 3.702 13 O -0.470 6.470 14 C -0.171 4.171 15 C -0.136 4.136 16 C -0.131 4.131 17 C -0.055 4.055 18 C -0.568 4.568 19 H 0.056 0.944 20 C -0.194 4.194 21 N -0.591 5.591 22 Si 0.771 3.229 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.177 1.177 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.253 0.747 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.032 0.968 47 H 0.031 0.969 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.102 0.393 34.914 34.980 hybrid contribution -0.169 0.325 -0.773 0.856 sum 1.933 0.718 34.141 34.203 Atomic orbital electron populations 1.21928 0.95189 1.02161 1.01749 1.21065 0.95458 0.99455 0.94128 0.91576 1.21557 0.95534 1.00772 0.96844 1.21556 0.95548 1.00703 0.98088 1.21521 1.00465 0.99505 0.93998 1.21613 0.94046 1.00977 0.98670 1.21360 0.96137 1.00144 0.92464 0.89589 1.21490 0.99668 0.95088 0.84039 1.45954 1.57741 1.28301 1.05065 1.21173 0.78150 0.85060 0.85829 1.90685 1.42017 1.26786 1.87488 1.21684 1.04483 1.00531 0.90415 1.21278 1.00544 0.98717 0.93044 1.21340 1.00379 0.98628 0.92767 1.19586 0.96124 0.95847 0.93955 1.21540 1.34720 1.09065 0.91434 0.94429 1.26002 0.96890 1.00938 0.95575 1.70060 1.48839 1.41518 0.98678 0.85690 0.79421 0.79574 0.78170 1.19225 1.20688 1.17671 0.92231 0.92051 0.93300 0.91552 0.91527 0.91406 0.92417 0.91423 0.91685 0.91328 0.92568 0.93176 0.92264 0.74742 0.86607 0.86617 0.93120 0.93078 0.92404 0.92425 0.96829 0.96945 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.85 71.98 0.64 -1.10 16 2 C -0.08 -0.88 2.25 -10.79 -0.02 -0.90 16 3 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.11 -0.94 5.20 30.59 0.16 -0.78 16 5 C -0.12 -1.02 5.92 30.59 0.18 -0.84 16 6 C -0.12 -0.99 5.92 30.60 0.18 -0.81 16 7 C -0.12 -1.18 5.08 30.59 0.16 -1.02 16 8 C -0.08 -0.91 1.75 -10.80 -0.02 -0.93 16 9 H 0.09 0.84 8.14 -2.38 -0.02 0.83 16 10 C 0.12 2.06 4.85 86.38 0.42 2.48 16 11 N -0.72 -12.51 5.28 -463.07 -2.45 -14.95 16 12 C 0.51 13.09 7.83 87.66 0.69 13.77 16 13 O -0.59 -21.02 15.98 -3.04 -0.05 -21.07 16 14 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 15 C -0.10 -3.23 4.50 30.59 0.14 -3.09 16 16 C -0.09 -3.63 5.15 30.60 0.16 -3.47 16 17 C -0.02 -0.87 4.04 29.85 0.12 -0.75 16 18 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 19 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 20 C 0.00 0.15 5.47 84.65 0.46 0.62 16 21 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 22 Si 0.95 46.37 27.47 68.60 1.88 48.26 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.68 6.32 -2.39 -0.02 0.66 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.64 7.18 -2.39 -0.02 0.62 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.17 6.18 -2.39 -0.01 1.16 16 39 H 0.42 4.53 7.65 -92.71 -0.71 3.82 16 40 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 43 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 47 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 48 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -73.68 370.50 3.49 -70.19 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.13 Total: 9.00 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.67 Total: -30.92 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -2.15 Total: -75.47 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.07 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.88 Total: 48.26 kcal Total: -73.68 3.49 -70.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.591 kcal (2) G-P(sol) polarization free energy of solvation -73.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds