Wall clock time and date at job start Tue Mar 31 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47164 * 59.99702 * 5 4 2 7 7 H 1.09001 * 109.47230 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.47235 * 59.99744 * 6 5 4 9 9 C 1.34777 * 119.99542 * 84.99810 * 8 6 5 10 10 O 1.21278 * 120.00346 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99788 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.47094 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46995 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47204 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47303 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99957 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00116 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99794 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47003 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47135 * 120.00002 * 19 17 15 22 22 H 1.48496 * 109.47294 * 239.99952 * 19 17 15 23 23 C 1.53002 * 109.47415 * 300.00027 * 6 5 4 24 24 H 1.08996 * 109.46550 * 300.00288 * 23 6 5 25 25 C 1.52995 * 109.46925 * 180.02562 * 23 6 5 26 26 C 1.52996 * 109.46972 * 59.99860 * 23 6 5 27 27 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 29 29 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 30 30 H 1.08993 * 109.47839 * 60.00073 * 4 2 1 31 31 H 1.09000 * 109.47160 * 299.99635 * 4 2 1 32 32 H 1.09001 * 109.46998 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47050 * 299.99699 * 5 4 2 34 34 H 0.96994 * 120.00446 * 265.00375 * 8 6 5 35 35 H 1.09002 * 109.46880 * 300.00032 * 11 9 8 36 36 H 1.09001 * 109.47340 * 60.00062 * 11 9 8 37 37 H 1.08995 * 109.47147 * 300.00169 * 12 11 9 38 38 H 1.09003 * 109.46915 * 60.00476 * 12 11 9 39 39 H 1.09009 * 109.47368 * 300.00134 * 13 12 11 40 40 H 1.09001 * 109.47268 * 60.00360 * 13 12 11 41 41 H 1.09002 * 109.46949 * 299.99857 * 14 13 12 42 42 H 1.08997 * 109.47585 * 59.99721 * 14 13 12 43 43 H 0.97001 * 119.99555 * 179.97438 * 18 17 15 44 44 H 1.08992 * 109.47458 * 59.99987 * 25 23 6 45 45 H 1.09001 * 109.46885 * 180.02562 * 25 23 6 46 46 H 1.08999 * 109.47330 * 299.98997 * 25 23 6 47 47 H 1.09000 * 109.47054 * 60.00300 * 26 23 6 48 48 H 1.09001 * 109.46997 * 180.02562 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5701 -0.7217 -1.2489 6 6 4.0795 -1.4433 0.0004 7 1 5.1695 -1.4440 0.0005 8 7 3.5907 -2.8244 0.0002 9 6 4.2673 -3.7785 -0.6693 10 8 5.2811 -3.4940 -1.2711 11 6 3.7642 -5.1991 -0.6701 12 6 4.7079 -6.0739 -1.4978 13 6 4.1975 -7.5162 -1.4981 14 6 5.1414 -8.3912 -2.3253 15 6 4.6383 -9.8117 -2.3260 16 1 3.7358 -10.0652 -1.7898 17 6 5.3302 -10.7878 -3.0113 18 7 6.4290 -10.4790 -3.6648 19 14 4.7070 -12.5487 -3.0117 20 1 3.4605 -12.6328 -2.2089 21 1 4.4265 -12.9743 -4.4066 22 1 5.7381 -13.4389 -2.4205 23 6 3.5695 -0.7221 1.2497 24 1 3.9331 0.3054 1.2498 25 6 4.0795 -1.4433 2.4988 26 6 2.0395 -0.7216 1.2493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6768 -0.2075 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9335 -1.2359 -2.1386 33 1 3.9338 0.3058 -1.2486 34 1 2.7801 -3.0521 0.4817 35 1 3.7268 -5.5718 0.3535 36 1 2.7652 -5.2305 -1.1050 37 1 4.7449 -5.7010 -2.5214 38 1 5.7071 -6.0426 -1.0633 39 1 4.1608 -7.8889 -0.4743 40 1 3.1982 -7.5479 -1.9323 41 1 5.1785 -8.0187 -3.3490 42 1 6.1406 -8.3595 -1.8908 43 1 6.9160 -11.1657 -4.1466 44 1 5.1694 -1.4433 2.4989 45 1 3.7157 -0.9298 3.3888 46 1 3.7160 -2.4710 2.4989 47 1 1.6758 -1.7491 1.2490 48 1 1.6761 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588157816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:11 Heat of formation + Delta-G solvation = -96.644752 kcal Electronic energy + Delta-G solvation = -22359.005259 eV Core-core repulsion = 19218.406224 eV Total energy + Delta-G solvation = -3140.599035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55002 -38.55079 -34.94939 -34.52330 -32.91614 -32.58872 -31.37700 -29.53115 -27.01062 -26.50389 -25.31764 -22.76576 -22.12490 -20.99242 -20.47711 -19.91871 -19.25963 -17.03332 -16.22687 -15.95144 -15.79934 -15.17590 -14.91230 -14.47473 -14.30305 -14.21725 -13.83338 -13.67033 -13.33004 -12.81773 -12.65477 -12.56947 -12.26538 -12.16316 -12.06542 -11.71457 -11.63493 -11.52772 -11.49099 -11.19681 -10.97264 -10.80474 -10.51935 -10.49885 -10.46136 -10.37428 -10.27631 -9.71195 -9.57990 -9.18210 -9.02422 -8.93873 -8.28652 -5.93303 -3.95626 2.82112 3.22942 3.34447 3.41546 3.45619 4.26976 4.32060 4.38765 4.50738 4.66117 4.83643 4.91438 4.98355 5.08453 5.14419 5.23192 5.27415 5.31425 5.38031 5.40443 5.41843 5.43734 5.50846 5.53036 5.61616 5.68539 5.78323 5.81293 5.89239 5.90149 5.98283 6.00324 6.07160 6.14981 6.18484 6.35393 6.49833 6.60246 6.88303 7.06457 7.23635 7.54616 7.77011 7.93185 8.08643 8.37297 8.50502 9.12444 9.67955 11.18113 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030423 B = 0.002599 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.123762 B =10772.037368 C =10950.536464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.132 4.132 6 C 0.151 3.849 7 H 0.086 0.914 8 N -0.729 5.729 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.140 4.140 12 C -0.102 4.102 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.099 4.099 24 H 0.082 0.918 25 C -0.148 4.148 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.396 0.604 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 24.377 11.609 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.170 4.170 6 C 0.046 3.954 7 H 0.104 0.896 8 N -0.383 5.383 9 C 0.299 3.701 10 O -0.412 6.412 11 C -0.180 4.180 12 C -0.140 4.140 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.117 4.117 24 H 0.100 0.900 25 C -0.205 4.205 26 C -0.147 4.147 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.308 24.500 11.064 28.791 hybrid contribution -0.687 -1.087 0.157 1.296 sum -10.995 23.413 11.221 28.195 Atomic orbital electron populations 1.21834 0.95250 1.01896 1.01542 1.21160 0.95395 0.99609 0.94963 0.91262 1.21559 0.95386 1.00834 0.97243 1.21927 0.95876 1.00527 0.98703 1.20895 0.99415 0.81111 0.94007 0.89597 1.46191 1.29417 1.08274 1.54373 1.21058 0.83597 0.87648 0.77766 1.90695 1.24802 1.82940 1.42802 1.21794 1.01786 0.91220 1.03155 1.21436 0.98059 0.95067 0.99481 1.21648 0.99913 0.92823 1.00391 1.19100 0.94349 0.93420 0.94897 1.21328 1.09631 0.93675 1.31089 0.92720 1.25049 0.95041 0.98962 0.95578 1.69991 1.16808 1.33342 1.33361 0.86559 0.78802 0.85079 0.77686 1.19781 1.21062 1.21056 1.21416 0.95862 1.00036 0.94436 0.89997 1.21818 1.01338 1.00643 0.96700 1.21663 0.94567 1.00698 0.97798 0.92631 0.92822 0.92732 0.92109 0.91774 0.91164 0.91360 0.76836 0.89330 0.89341 0.91867 0.91863 0.93533 0.93536 0.96605 0.96602 0.93116 0.92459 0.92601 0.92390 0.91988 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.09 -0.58 2.72 -90.62 -0.25 -0.83 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -0.88 5.05 -26.73 -0.13 -1.01 16 5 C -0.13 -1.21 5.60 -26.73 -0.15 -1.35 16 6 C 0.15 1.41 2.23 -67.93 -0.15 1.25 16 7 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 8 N -0.73 -7.25 3.54 -53.80 -0.19 -7.44 16 9 C 0.51 7.12 7.79 -10.98 -0.09 7.03 16 10 O -0.54 -9.77 15.64 5.56 0.09 -9.69 16 11 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 12 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 19 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.10 -0.67 2.51 -90.62 -0.23 -0.90 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 C -0.15 -1.02 9.04 37.16 0.34 -0.69 16 26 C -0.11 -0.65 4.31 -26.73 -0.12 -0.77 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.40 3.06 6.65 -40.82 -0.27 2.78 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 39 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 47 H 0.06 0.37 6.51 -51.93 -0.34 0.03 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -33.05 373.12 -9.52 -42.57 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -9.35 Total: -3.25 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.40 Total: -17.81 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.55 Total: -34.51 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.05 -9.52 -42.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588157816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.079 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds