Wall clock time and date at job start Tue Mar 31 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47460 * 2 1 4 4 C 1.52997 * 109.47137 * 120.00193 * 2 1 3 5 5 C 1.53002 * 109.47086 * 59.99511 * 4 2 1 6 6 N 1.46507 * 109.47234 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00105 * 154.99873 * 6 5 4 8 8 O 1.21282 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99933 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47017 * 89.99937 * 17 15 13 19 19 H 1.48507 * 109.47241 * 209.99826 * 17 15 13 20 20 H 1.48500 * 109.47209 * 329.99791 * 17 15 13 21 21 C 1.53003 * 109.47007 * 60.00496 * 5 4 2 22 22 C 1.52997 * 109.46792 * 299.99684 * 21 5 4 23 23 H 1.09005 * 109.47389 * 299.99795 * 22 21 5 24 24 C 1.53001 * 109.47140 * 180.02562 * 22 21 5 25 25 C 1.53001 * 109.46898 * 240.00087 * 2 1 3 26 26 H 1.09004 * 109.46753 * 300.00391 * 1 2 3 27 27 H 1.09004 * 109.46709 * 59.99678 * 1 2 3 28 28 H 1.08999 * 109.47460 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46998 * 299.99899 * 4 2 1 30 30 H 1.08998 * 109.47684 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47524 * 299.99798 * 5 4 2 32 32 H 0.96995 * 119.99791 * 335.00980 * 6 5 4 33 33 H 1.09001 * 109.46665 * 60.00498 * 9 7 6 34 34 H 1.08992 * 109.47413 * 300.00829 * 9 7 6 35 35 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 36 36 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 37 37 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 38 38 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 39 39 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 40 40 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 41 41 H 0.97007 * 120.00011 * 180.02562 * 16 15 13 42 42 H 1.08991 * 109.47139 * 59.99792 * 21 5 4 43 43 H 1.08999 * 109.47062 * 179.97438 * 21 5 4 44 44 H 1.09000 * 109.47322 * 300.00457 * 24 22 21 45 45 H 1.08999 * 109.46994 * 60.00090 * 24 22 21 46 46 H 1.09000 * 109.47297 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.47297 * 60.00040 * 25 2 1 48 48 H 1.09000 * 109.47322 * 180.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 7 2.0188 -2.8546 2.4451 7 6 1.3421 -3.9115 2.9367 8 8 0.3287 -4.2908 2.3889 9 6 1.8453 -4.6225 4.1665 10 6 0.9016 -5.7766 4.5103 11 6 1.4121 -6.4981 5.7592 12 6 0.4687 -7.6527 6.1026 13 6 0.9719 -8.3637 7.3324 14 1 1.8741 -8.0256 7.8204 15 6 0.2799 -9.4451 7.8350 16 7 0.7188 -10.0653 8.9085 17 14 -1.2808 -10.0294 6.9912 18 1 -0.9373 -11.0432 5.9619 19 1 -2.1908 -10.6341 7.9971 20 1 -1.9553 -8.8756 6.3439 21 6 2.0399 -2.8851 0.0000 22 6 1.5299 -2.1638 -1.2492 23 1 0.4399 -2.1638 -1.2493 24 6 2.0394 -2.8854 -2.4985 25 6 2.0400 -0.7212 -1.2493 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6767 -0.2074 2.1392 30 1 3.1300 -0.7217 1.2491 31 1 0.4399 -2.1638 1.2493 32 1 2.8293 -2.5514 2.8831 33 1 1.8827 -3.9224 5.0011 34 1 2.8442 -5.0147 3.9763 35 1 0.8645 -6.4766 3.6755 36 1 -0.0976 -5.3847 4.7004 37 1 1.4488 -5.7978 6.5937 38 1 2.4113 -6.8900 5.5694 39 1 -0.5307 -7.2611 6.2921 40 1 0.4324 -8.3527 5.2679 41 1 0.2322 -10.8264 9.2619 42 1 3.1298 -2.8851 0.0000 43 1 1.6769 -3.9128 0.0002 44 1 3.1294 -2.8859 -2.4987 45 1 1.6756 -3.9129 -2.4983 46 1 1.6757 -2.3718 -3.3885 47 1 1.6766 -0.2074 -2.1393 48 1 3.1300 -0.7217 -1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588158879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:44 Heat of formation + Delta-G solvation = -93.839505 kcal Electronic energy + Delta-G solvation = -22123.061836 eV Core-core repulsion = 18982.584446 eV Total energy + Delta-G solvation = -3140.477390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43660 -38.88380 -35.12883 -34.58923 -33.48373 -32.56584 -30.73679 -29.45042 -27.18608 -26.80724 -25.87259 -22.92418 -21.80043 -21.27775 -20.30262 -19.99258 -18.97379 -16.85974 -16.64910 -16.37141 -15.75373 -15.33929 -15.06958 -14.41677 -14.28120 -14.17928 -14.00788 -13.68882 -13.51776 -12.93102 -12.62567 -12.57395 -12.40643 -12.17877 -12.04029 -11.90533 -11.72787 -11.66064 -11.39518 -11.26102 -11.08523 -10.85242 -10.70785 -10.69858 -10.50895 -10.25840 -9.90706 -9.76672 -9.62148 -9.36451 -9.11673 -9.09575 -8.47575 -5.98817 -3.96129 2.72773 3.10636 3.36861 3.43716 3.50104 4.23667 4.33643 4.46337 4.51839 4.68605 4.71948 4.88294 4.92905 5.00042 5.08815 5.18891 5.26841 5.30416 5.32870 5.33569 5.34462 5.36816 5.45845 5.53742 5.59831 5.64253 5.74601 5.77259 5.85233 5.87567 5.89710 5.98329 6.06315 6.07388 6.17945 6.20521 6.39324 6.47234 6.71558 6.85631 7.01954 7.40706 7.46440 7.53535 7.86817 8.28124 8.60309 9.06237 9.64680 11.14698 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.002541 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.045131 B =11017.456736 C =11244.792480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.142 3.858 6 N -0.735 5.735 7 C 0.512 3.488 8 O -0.537 6.537 9 C -0.140 4.140 10 C -0.106 4.106 11 C -0.102 4.102 12 C -0.016 4.016 13 C -0.519 4.519 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.264 1.264 21 C -0.124 4.124 22 C -0.092 4.092 23 H 0.075 0.925 24 C -0.147 4.147 25 C -0.110 4.110 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 23.095 -21.587 31.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.160 4.160 5 C 0.038 3.962 6 N -0.387 5.387 7 C 0.300 3.700 8 O -0.413 6.413 9 C -0.180 4.180 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.162 4.162 22 C -0.111 4.111 23 H 0.093 0.907 24 C -0.204 4.204 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.025 22.661 -21.852 31.737 hybrid contribution -0.306 -0.278 -0.091 0.424 sum 3.719 22.383 -21.943 31.564 Atomic orbital electron populations 1.21989 0.95082 1.02504 1.01684 1.21044 0.96165 0.99049 0.94322 0.90877 1.21838 1.00962 0.94629 0.98534 1.20986 1.00224 0.90695 0.84321 1.46190 1.29559 1.32977 1.29999 1.21068 0.83562 0.79609 0.85758 1.90691 1.24858 1.64898 1.60895 1.21776 1.01815 0.99258 0.95105 1.21472 0.98183 0.95408 0.99305 1.21476 0.99733 0.97914 0.94892 1.19579 0.95304 0.93701 0.96712 1.21190 1.11300 1.13151 1.10034 0.91120 1.25045 0.97547 0.96296 0.94763 1.69924 1.40118 1.21823 1.22711 0.86770 0.83787 0.79331 0.79390 1.20324 1.21474 1.18888 1.21983 1.00736 0.99983 0.93533 1.21139 1.00876 0.94541 0.94527 0.90708 1.21818 1.01067 1.00449 0.97090 1.21661 1.00554 0.95179 0.97377 0.92665 0.92650 0.91812 0.91299 0.91436 0.89239 0.76808 0.89078 0.89083 0.91855 0.91845 0.92867 0.92902 0.96630 0.97071 0.92838 0.91928 0.91330 0.92786 0.92570 0.92731 0.91859 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.50 37.16 0.32 -0.73 16 2 C -0.09 -0.53 3.19 -90.62 -0.29 -0.82 16 3 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -0.81 4.92 -26.73 -0.13 -0.94 16 5 C 0.14 1.30 2.18 -67.92 -0.15 1.15 16 6 N -0.74 -7.13 5.08 -53.80 -0.27 -7.40 16 7 C 0.51 6.89 7.79 -10.99 -0.09 6.81 16 8 O -0.54 -9.45 15.65 5.56 0.09 -9.36 16 9 C -0.14 -1.79 5.70 -27.89 -0.16 -1.95 16 10 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 11 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 12 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 13 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 14 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 15 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -28.60 13.96 55.43 0.77 -27.82 16 17 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 21 C -0.12 -1.12 4.77 -26.73 -0.13 -1.24 16 22 C -0.09 -0.69 2.44 -90.62 -0.22 -0.91 16 23 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 24 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 25 C -0.11 -0.68 4.73 -26.73 -0.13 -0.80 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 1.02 5.87 -51.93 -0.30 0.72 16 32 H 0.40 2.75 8.60 -40.82 -0.35 2.39 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -33.55 368.41 -9.16 -42.71 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -9.20 Total: -3.07 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.43 Total: -18.48 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.50 Total: -35.23 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.55 -9.16 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.133 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds