Wall clock time and date at job start Tue Mar 31 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47341 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99588 * 2 1 3 5 5 C 1.53002 * 109.47086 * 179.97438 * 4 2 1 6 6 N 1.46504 * 109.46897 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99735 * 154.99929 * 6 5 4 8 8 O 1.21282 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47188 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00218 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00346 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 120.00142 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47041 * 89.99719 * 17 15 13 19 19 H 1.48493 * 109.47237 * 209.99491 * 17 15 13 20 20 H 1.48500 * 109.47007 * 329.99830 * 17 15 13 21 21 C 1.53003 * 109.47007 * 60.00496 * 5 4 2 22 22 C 1.52997 * 109.46792 * 299.99684 * 21 5 4 23 23 H 1.09005 * 109.46998 * 179.97438 * 22 21 5 24 24 C 1.52997 * 109.47347 * 300.00094 * 22 21 5 25 25 C 1.53001 * 109.46939 * 119.99699 * 2 1 3 26 26 H 1.08993 * 109.47126 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46953 * 300.00301 * 1 2 3 28 28 H 1.08995 * 109.46890 * 60.00001 * 1 2 3 29 29 H 1.09005 * 109.46998 * 60.00388 * 4 2 1 30 30 H 1.09005 * 109.47389 * 300.00570 * 4 2 1 31 31 H 1.08991 * 109.47341 * 300.00412 * 5 4 2 32 32 H 0.96998 * 120.00303 * 335.00103 * 6 5 4 33 33 H 1.09001 * 109.46665 * 60.00498 * 9 7 6 34 34 H 1.08993 * 109.47304 * 300.00054 * 9 7 6 35 35 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 36 36 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 37 37 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 38 38 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 39 39 H 1.09000 * 109.47380 * 300.00763 * 12 11 10 40 40 H 1.09001 * 109.46997 * 60.00426 * 12 11 10 41 41 H 0.96996 * 120.00253 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.47549 * 59.99317 * 21 5 4 43 43 H 1.08999 * 109.47062 * 179.97438 * 21 5 4 44 44 H 1.09000 * 109.47324 * 180.02562 * 24 22 21 45 45 H 1.08999 * 109.47176 * 300.00148 * 24 22 21 46 46 H 1.08995 * 109.47240 * 60.00036 * 24 22 21 47 47 H 1.09000 * 109.47297 * 299.99788 * 25 2 1 48 48 H 1.09007 * 109.47219 * 59.99889 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2495 6 7 4.0583 -1.4120 -2.4453 7 6 5.2801 -1.1261 -2.9373 8 8 5.9754 -0.2968 -2.3897 9 6 5.7826 -1.8375 -4.1670 10 6 7.1852 -1.3321 -4.5112 11 6 7.6952 -2.0539 -5.7601 12 6 9.0974 -1.5481 -6.1046 13 6 9.6000 -2.2595 -7.3344 14 1 8.9810 -2.9982 -7.8218 15 6 10.8496 -1.9666 -7.8380 16 7 11.2881 -2.5871 -8.9115 17 14 11.9201 -0.6884 -6.9954 18 1 12.7626 -1.3489 -5.9663 19 1 12.7921 -0.0317 -8.0021 20 1 11.0564 0.3316 -6.3480 21 6 4.0805 -1.4417 -0.0002 22 6 3.5705 -0.7204 1.2489 23 1 3.9339 -1.2342 2.1390 24 6 4.0800 0.7223 1.2486 25 6 2.0400 -0.7212 1.2493 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2075 -2.1392 30 1 1.6766 -1.7490 -1.2492 31 1 3.9330 0.3069 -1.2497 32 1 3.5023 -2.0755 -2.8831 33 1 5.1099 -1.6397 -5.0015 34 1 5.8199 -2.9100 -3.9766 35 1 7.1483 -0.2594 -4.7015 36 1 7.8577 -1.5301 -3.6766 37 1 7.7319 -3.1266 -5.5702 38 1 7.0225 -1.8554 -6.5946 39 1 9.0603 -0.4754 -6.2946 40 1 9.7703 -1.7462 -5.2703 41 1 12.1673 -2.3812 -9.2655 42 1 3.7175 -2.4694 0.0001 43 1 5.1705 -1.4417 -0.0007 44 1 3.7171 1.2361 2.1388 45 1 5.1700 0.7227 1.2484 46 1 3.7164 1.2358 0.3586 47 1 1.6767 -0.2073 2.1393 48 1 1.6766 -1.7489 1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588158880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:46 Heat of formation + Delta-G solvation = -93.724546 kcal Electronic energy + Delta-G solvation = -22109.979146 eV Core-core repulsion = 18969.506741 eV Total energy + Delta-G solvation = -3140.472405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43558 -38.87719 -35.12980 -34.57408 -33.51087 -32.56233 -30.74140 -29.46587 -27.12590 -26.80543 -25.87233 -22.84941 -22.05635 -21.25252 -20.10247 -19.99132 -19.02232 -16.92730 -16.65823 -16.36378 -15.70371 -15.41556 -14.98163 -14.39449 -14.28971 -14.16282 -14.03134 -13.73622 -13.40963 -13.04424 -12.62580 -12.53210 -12.38469 -12.18126 -12.02334 -11.96771 -11.75139 -11.71365 -11.35587 -11.18540 -11.08320 -10.88236 -10.70692 -10.53099 -10.50449 -10.43907 -9.90598 -9.76547 -9.62163 -9.36387 -9.09609 -9.09396 -8.47557 -5.98787 -3.96107 2.73058 3.10485 3.36825 3.43710 3.50073 4.24693 4.32207 4.45904 4.51810 4.68506 4.74989 4.86512 4.92277 5.01205 5.10704 5.17770 5.23822 5.27672 5.30643 5.33842 5.36564 5.37281 5.44732 5.52461 5.59639 5.68270 5.73433 5.78027 5.83472 5.88544 5.90892 6.00698 6.06086 6.07655 6.17264 6.20586 6.39603 6.47364 6.71582 6.85676 7.01971 7.40714 7.46634 7.53525 7.86827 8.28384 8.60327 9.06281 9.64681 11.14707 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.002516 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.809889 B =11125.427013 C =11541.603491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.121 4.121 5 C 0.142 3.858 6 N -0.736 5.736 7 C 0.512 3.488 8 O -0.537 6.537 9 C -0.140 4.140 10 C -0.106 4.106 11 C -0.102 4.102 12 C -0.016 4.016 13 C -0.519 4.519 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.264 1.264 21 C -0.125 4.125 22 C -0.089 4.089 23 H 0.071 0.929 24 C -0.152 4.152 25 C -0.110 4.110 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.969 3.362 21.229 32.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.159 4.159 5 C 0.038 3.962 6 N -0.387 5.387 7 C 0.300 3.700 8 O -0.413 6.413 9 C -0.180 4.180 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.163 4.163 22 C -0.108 4.108 23 H 0.089 0.911 24 C -0.209 4.209 25 C -0.147 4.147 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.299 3.964 21.491 31.944 hybrid contribution 0.383 0.188 0.101 0.438 sum -22.916 4.152 21.592 31.759 Atomic orbital electron populations 1.21823 0.95002 1.01837 1.01762 1.21120 0.95463 1.00080 0.94311 0.90599 1.21868 0.94141 1.01394 0.98469 1.20982 0.93290 0.97666 0.84273 1.46191 1.18432 1.44111 1.30008 1.21066 0.80693 0.82500 0.85758 1.90692 1.55954 1.33744 1.60885 1.21779 1.00015 1.01056 0.95110 1.21473 0.92876 1.00709 0.99299 1.21475 0.98625 0.99021 0.94892 1.19578 0.92437 0.96576 0.96713 1.21187 1.01577 1.22864 1.10032 0.91117 1.25048 0.97811 0.96040 0.94765 1.69920 1.19205 1.42754 1.22689 0.86771 0.80575 0.82556 0.79385 1.20327 1.21472 1.18888 1.21953 1.01489 0.99057 0.93838 1.21077 0.95186 0.96695 0.97817 0.91092 1.21941 1.01428 0.95854 1.01680 1.21669 0.95028 1.00580 0.97468 0.92686 0.92602 0.92634 0.91349 0.91435 0.89238 0.76811 0.89086 0.89089 0.91848 0.91856 0.92900 0.92873 0.96629 0.97075 0.92837 0.91938 0.91286 0.92897 0.92432 0.92132 0.91866 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 2 C -0.09 -0.56 2.45 -90.62 -0.22 -0.78 16 3 H 0.08 0.51 6.43 -51.93 -0.33 0.18 16 4 C -0.12 -0.81 4.67 -26.73 -0.12 -0.93 16 5 C 0.14 1.30 2.18 -67.93 -0.15 1.16 16 6 N -0.74 -7.13 5.08 -53.80 -0.27 -7.40 16 7 C 0.51 6.88 7.79 -10.99 -0.09 6.79 16 8 O -0.54 -9.40 15.65 5.56 0.09 -9.32 16 9 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 10 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 11 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 12 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 13 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -28.59 13.96 55.43 0.77 -27.82 16 17 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 21 C -0.12 -1.12 5.02 -26.73 -0.13 -1.26 16 22 C -0.09 -0.67 3.19 -90.59 -0.29 -0.96 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 C -0.15 -1.24 8.50 37.16 0.32 -0.92 16 25 C -0.11 -0.68 4.74 -26.70 -0.13 -0.80 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 1.02 5.86 -51.93 -0.30 0.72 16 32 H 0.40 2.75 8.60 -40.82 -0.35 2.40 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -33.50 368.41 -9.16 -42.66 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -9.20 Total: -3.14 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -1.43 Total: -18.43 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.50 Total: -35.22 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.50 -9.16 -42.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.066 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds