Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46507 * 109.46688 * 119.99896 * 2 1 3 5 5 C 1.34778 * 119.99972 * 274.99840 * 4 2 1 6 6 O 1.21287 * 120.00091 * 0.02562 * 5 4 2 7 7 C 1.50690 * 119.99882 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47197 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47540 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47330 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.46844 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00338 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99790 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00186 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00040 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46973 * 90.00531 * 15 13 11 17 17 H 1.48507 * 109.47056 * 210.00355 * 15 13 11 18 18 H 1.48497 * 109.47310 * 330.00417 * 15 13 11 19 19 C 1.52992 * 109.47106 * 240.00064 * 2 1 3 20 20 C 1.52997 * 109.47482 * 60.00162 * 19 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 2 22 22 C 1.53002 * 109.47233 * 299.99657 * 21 20 19 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 21 20 24 24 C 1.52999 * 109.46961 * 180.02562 * 19 2 1 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47596 * 180.02562 * 1 2 3 28 28 H 0.96993 * 119.99727 * 95.00168 * 4 2 1 29 29 H 1.09001 * 109.47658 * 300.00018 * 7 5 4 30 30 H 1.09003 * 109.47500 * 60.00298 * 7 5 4 31 31 H 1.08999 * 109.47176 * 300.00225 * 8 7 5 32 32 H 1.09005 * 109.47168 * 60.00063 * 8 7 5 33 33 H 1.08999 * 109.47084 * 300.00299 * 9 8 7 34 34 H 1.09004 * 109.46648 * 60.00396 * 9 8 7 35 35 H 1.09001 * 109.46994 * 300.00513 * 10 9 8 36 36 H 1.08993 * 109.46432 * 60.00371 * 10 9 8 37 37 H 0.96996 * 120.00357 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.47103 * 299.99915 * 19 2 1 39 39 H 1.09002 * 109.47153 * 59.99783 * 20 19 2 40 40 H 1.09001 * 109.46832 * 299.99974 * 20 19 2 41 41 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 42 42 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 43 43 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.47075 * 300.00932 * 22 21 20 45 45 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 46 46 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.47486 * 59.99547 * 24 19 2 48 48 H 1.09002 * 109.46716 * 299.99630 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0183 2.3572 6 8 1.8581 1.1585 2.4118 7 6 2.6497 -0.7285 3.5875 8 6 2.7005 0.2544 4.7589 9 6 3.2103 -0.4668 6.0083 10 6 3.2617 0.5163 7.1795 11 6 3.7644 -0.1940 8.4098 12 1 4.0212 -1.2419 8.3613 13 6 3.8956 0.4937 9.5976 14 7 4.3339 -0.1262 10.6715 15 14 3.4508 2.3061 9.6816 16 1 2.0179 2.4477 10.0452 17 1 4.2904 2.9748 10.7079 18 1 3.6904 2.9364 8.3586 19 6 2.0400 -0.7212 -1.2492 20 6 1.5301 0.0000 -2.4984 21 6 2.0396 -0.7217 -3.7476 22 6 3.5696 -0.7222 -3.7479 23 6 4.0795 -1.4434 -2.4987 24 6 3.5700 -0.7217 -1.2488 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2489 -1.6317 1.1527 29 1 1.9775 -1.5508 3.8326 30 1 3.6491 -1.1203 3.3980 31 1 3.3724 1.0770 4.5141 32 1 1.7009 0.6459 4.9483 33 1 2.5380 -1.2891 6.2529 34 1 4.2098 -0.8585 5.8191 35 1 3.9342 1.3384 6.9346 36 1 2.2624 0.9084 7.3687 37 1 4.4265 0.3577 11.5070 38 1 1.6767 -1.7489 -1.2492 39 1 1.8934 1.0277 -2.4984 40 1 0.4401 0.0000 -2.4985 41 1 1.6759 -1.7491 -3.7474 42 1 1.6767 -0.2075 -4.6376 43 1 3.9327 -1.2359 -4.6380 44 1 3.9333 0.3053 -3.7481 45 1 3.7158 -2.4710 -2.4985 46 1 5.1695 -1.4434 -2.4986 47 1 3.9330 -1.2358 -0.3588 48 1 3.9336 0.3058 -1.2486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588159281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -96.489260 kcal Electronic energy + Delta-G solvation = -21972.829503 eV Core-core repulsion = 18832.237211 eV Total energy + Delta-G solvation = -3140.592292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.22670 -38.81197 -35.62876 -34.86818 -32.64093 -32.05612 -31.10249 -30.04513 -28.97851 -26.00797 -24.11049 -22.82780 -22.14679 -20.82125 -20.52586 -19.99006 -19.82702 -16.99218 -16.62025 -16.28955 -15.67352 -15.61247 -14.77829 -14.51306 -14.26862 -14.16920 -13.96674 -13.71952 -13.52093 -13.05969 -12.69334 -12.62432 -12.52274 -12.22463 -12.00248 -11.83708 -11.74019 -11.71608 -11.48951 -11.22877 -11.07877 -10.81171 -10.70630 -10.50886 -10.48945 -10.40085 -9.91169 -9.76987 -9.62235 -9.36877 -9.13796 -9.09539 -8.47484 -5.98752 -3.96058 2.73811 3.12352 3.36870 3.43726 3.50140 4.16440 4.33094 4.35364 4.51858 4.69375 4.80587 4.83330 4.93926 5.03051 5.07623 5.13366 5.15482 5.25762 5.26970 5.29668 5.34329 5.37166 5.42512 5.51515 5.64563 5.67539 5.76139 5.76956 5.78881 5.83241 5.87099 5.94222 6.04433 6.06683 6.11921 6.19350 6.39629 6.47481 6.71658 6.85765 7.02016 7.40763 7.46884 7.53586 7.86877 8.28876 8.60346 9.06293 9.64708 11.14736 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036536 B = 0.002449 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.190203 B =11428.444788 C =11727.994277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 H 0.086 0.914 4 N -0.732 5.732 5 C 0.513 3.487 6 O -0.538 6.538 7 C -0.140 4.140 8 C -0.106 4.106 9 C -0.102 4.102 10 C -0.016 4.016 11 C -0.519 4.519 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.264 1.264 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.398 0.602 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 -3.843 -31.677 32.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.104 0.896 4 N -0.385 5.385 5 C 0.300 3.700 6 O -0.414 6.414 7 C -0.180 4.180 8 C -0.144 4.144 9 C -0.140 4.140 10 C -0.053 4.053 11 C -0.557 4.557 12 H 0.089 0.911 13 C -0.137 4.137 14 N -0.546 5.546 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.189 1.189 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.192 -2.944 -31.439 32.001 hybrid contribution -0.108 0.393 0.187 0.448 sum -5.299 -2.552 -31.252 31.801 Atomic orbital electron populations 1.22233 0.95504 1.02019 1.02582 1.20945 0.93860 0.97519 0.83668 0.89614 1.46169 1.68563 1.13961 1.09805 1.21049 0.76861 0.87463 0.84591 1.90693 1.49465 1.16280 1.84977 1.21774 1.02629 1.00384 0.93169 1.21472 1.02329 0.97365 0.93192 1.21478 0.99923 0.98852 0.93756 1.19578 0.96337 0.95390 0.94001 1.21187 1.43424 0.98273 0.92766 0.91118 1.25050 0.94728 0.98239 0.95661 1.69922 1.47269 1.36645 1.00731 0.86770 0.78547 0.85867 0.78091 1.20329 1.21472 1.18892 1.21433 0.95934 0.99928 0.93832 1.21606 1.00624 0.99501 0.93456 1.21523 0.95713 1.00711 0.97639 1.21551 0.95706 1.00845 0.97775 1.21543 1.00292 0.99316 0.94542 1.21593 0.94561 1.01226 0.97867 0.92005 0.91574 0.92590 0.76803 0.89099 0.89101 0.91849 0.91868 0.92903 0.92877 0.96631 0.97073 0.92839 0.90747 0.91682 0.91381 0.92021 0.92014 0.92206 0.92010 0.92046 0.92006 0.91691 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.13 37.16 0.34 -1.09 16 2 C 0.14 1.29 2.16 -67.93 -0.15 1.14 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 4 N -0.73 -6.94 4.38 -53.81 -0.24 -7.18 16 5 C 0.51 6.83 7.79 -10.99 -0.09 6.75 16 6 O -0.54 -9.45 15.65 5.55 0.09 -9.36 16 7 C -0.14 -1.78 5.70 -27.89 -0.16 -1.94 16 8 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 9 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 10 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 11 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 12 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 15 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 19 C -0.09 -0.60 1.82 -90.63 -0.17 -0.77 16 20 C -0.11 -0.69 4.85 -26.73 -0.13 -0.82 16 21 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 22 C -0.12 -0.69 5.92 -26.73 -0.16 -0.84 16 23 C -0.12 -0.72 5.92 -26.70 -0.16 -0.87 16 24 C -0.11 -0.79 5.05 -26.70 -0.13 -0.93 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.40 2.73 8.39 -40.82 -0.34 2.39 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.38 6.43 -51.93 -0.33 0.05 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.46 7.44 -51.93 -0.39 0.07 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -33.52 370.98 -9.54 -43.06 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -9.33 Total: -3.68 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.76 Total: -18.52 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.54 Total: -34.99 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.52 -9.54 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588159281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.431 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds