Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46870 * 2 1 4 4 N 1.46500 * 109.47368 * 239.99938 * 2 1 3 5 5 C 1.34770 * 119.99955 * 84.99591 * 4 2 1 6 6 O 1.21279 * 120.00155 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99928 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.46978 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46865 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.46998 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47144 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99876 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99864 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00058 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99741 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47037 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46754 * 120.00145 * 15 13 11 18 18 H 1.48495 * 109.46831 * 239.99616 * 15 13 11 19 19 C 1.52997 * 109.46975 * 119.99778 * 2 1 3 20 20 C 1.53002 * 109.47415 * 300.00364 * 19 2 1 21 21 C 1.53000 * 109.47233 * 180.02562 * 20 19 2 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 24 24 C 1.52997 * 109.47232 * 60.00237 * 19 2 1 25 25 H 1.09001 * 109.47372 * 299.99850 * 1 2 3 26 26 H 1.08996 * 109.47261 * 60.00389 * 1 2 3 27 27 H 1.09004 * 109.47368 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00110 * 265.00369 * 4 2 1 29 29 H 1.09002 * 109.47423 * 300.00540 * 7 5 4 30 30 H 1.09005 * 109.46850 * 60.00825 * 7 5 4 31 31 H 1.09002 * 109.47355 * 300.00423 * 8 7 5 32 32 H 1.09005 * 109.46786 * 60.00627 * 8 7 5 33 33 H 1.09002 * 109.47254 * 300.00209 * 9 8 7 34 34 H 1.08994 * 109.47021 * 60.00145 * 9 8 7 35 35 H 1.09002 * 109.46986 * 300.00003 * 10 9 8 36 36 H 1.08999 * 109.47117 * 59.99693 * 10 9 8 37 37 H 0.97003 * 120.00236 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.47497 * 180.02562 * 19 2 1 39 39 H 1.08992 * 109.47063 * 59.99950 * 20 19 2 40 40 H 1.09004 * 109.46733 * 299.99664 * 20 19 2 41 41 H 1.09002 * 109.47398 * 59.99826 * 21 20 19 42 42 H 1.09001 * 109.47194 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.47153 * 300.00319 * 22 21 20 45 45 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 47 47 H 1.09002 * 109.47153 * 299.99992 * 24 19 2 48 48 H 1.09001 * 109.47289 * 60.00075 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8589 1.1585 -2.4115 7 6 2.6500 -0.7286 -3.5874 8 6 2.7018 0.2547 -4.7585 9 6 3.2119 -0.4666 -6.0077 10 6 3.2644 0.5167 -7.1787 11 6 3.7661 -0.1938 -8.4093 12 1 4.0224 -1.2419 -8.3610 13 6 3.8980 0.4941 -9.5970 14 7 3.5855 1.7701 -9.6559 15 14 4.5206 -0.3866 -11.1222 16 1 4.8010 -1.8074 -10.7936 17 1 3.4894 -0.3187 -12.1885 18 1 5.7670 0.2665 -11.5966 19 6 2.0399 -0.7212 1.2493 20 6 1.5299 0.0000 2.4985 21 6 2.0404 -0.7209 3.7478 22 6 1.5309 -2.1635 3.7481 23 6 2.0408 -2.8848 2.4989 24 6 1.5300 -2.1637 1.2493 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2490 -1.6317 -1.1526 29 1 3.6493 -1.1204 -3.3978 30 1 1.9777 -1.5509 -3.8325 31 1 1.7027 0.6468 -4.9483 32 1 3.3743 1.0767 -4.5132 33 1 4.2110 -0.8591 -5.8183 34 1 2.5392 -1.2884 -6.2528 35 1 2.2654 0.9096 -7.3684 36 1 3.9373 1.3384 -6.9333 37 1 3.6786 2.2542 -10.4914 38 1 3.1299 -0.7208 1.2496 39 1 0.4399 0.0000 2.4985 40 1 1.8932 1.0277 2.4985 41 1 3.1304 -0.7205 3.7476 42 1 1.6766 -0.2073 4.6378 43 1 1.8941 -2.6770 4.6382 44 1 0.4409 -2.1639 3.7483 45 1 1.6775 -3.9125 2.4989 46 1 3.1309 -2.8844 2.4987 47 1 0.4400 -2.1637 1.2493 48 1 1.8933 -2.6776 0.3594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588159282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = -97.041030 kcal Electronic energy + Delta-G solvation = -21907.312017 eV Core-core repulsion = 18766.695798 eV Total energy + Delta-G solvation = -3140.616219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.26676 -38.83048 -35.52952 -34.74120 -32.65931 -31.98275 -31.10360 -29.66833 -28.70882 -25.77083 -24.33775 -23.17103 -22.33414 -21.04290 -20.13594 -19.92215 -19.48235 -16.96664 -16.30861 -16.04193 -15.59141 -15.47884 -14.91559 -14.59781 -14.53516 -14.42020 -14.09582 -13.67963 -13.05941 -12.85146 -12.67544 -12.54965 -12.49786 -12.19638 -12.09677 -11.66783 -11.59515 -11.52937 -11.32061 -11.17065 -10.97247 -10.77978 -10.50842 -10.49584 -10.45879 -10.37536 -10.32680 -9.71696 -9.58056 -9.18292 -9.09549 -8.93851 -8.28663 -5.93167 -3.95485 2.80480 3.18236 3.34509 3.41573 3.45665 4.23709 4.28984 4.33813 4.50750 4.71571 4.80416 4.84145 4.97091 5.06724 5.09360 5.10428 5.16998 5.24975 5.28935 5.37164 5.41529 5.43071 5.44575 5.56277 5.65360 5.71346 5.74211 5.76825 5.80962 5.86861 5.90133 5.97911 6.02186 6.17982 6.19797 6.35171 6.46951 6.59828 6.88254 7.06361 7.23610 7.52553 7.77064 7.93209 8.08664 8.35428 8.50564 9.12511 9.68020 11.18193 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.045101 B = 0.002259 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.682877 B =12389.678622 C =12739.791529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.145 3.855 3 H 0.086 0.914 4 N -0.734 5.734 5 C 0.512 3.488 6 O -0.536 6.536 7 C -0.140 4.140 8 C -0.103 4.103 9 C -0.110 4.110 10 C 0.019 3.981 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.054 3.946 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.093 4.093 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.118 4.118 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.397 0.603 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -9.240 29.111 30.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.040 3.960 3 H 0.104 0.896 4 N -0.388 5.388 5 C 0.299 3.701 6 O -0.412 6.412 7 C -0.179 4.179 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.018 4.018 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.147 4.147 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.112 4.112 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.156 4.156 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.232 0.768 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.064 -8.226 28.939 30.509 hybrid contribution 0.453 -0.893 -0.876 1.331 sum -4.610 -9.119 28.063 29.865 Atomic orbital electron populations 1.22278 0.95559 1.02115 1.02509 1.20900 0.94102 0.97288 0.83680 0.89602 1.46250 1.68697 1.14015 1.09848 1.21087 0.76866 0.87502 0.84618 1.90696 1.49308 1.16236 1.84951 1.21799 1.02410 1.00439 0.93300 1.21443 1.02410 0.97237 0.92982 1.21649 0.99145 0.99233 0.94757 1.19105 0.97226 0.94145 0.91324 1.21325 1.43399 0.96316 0.94668 0.92712 1.25051 0.95742 0.94884 0.98994 1.69983 1.48900 1.08172 1.26408 0.86555 0.78479 0.79822 0.83245 1.19787 1.21067 1.21070 1.21421 1.00750 0.95160 0.93898 1.21605 1.01218 0.98968 0.93419 1.21527 1.00818 0.95647 0.97674 1.21539 1.00773 0.95720 0.97734 1.21539 1.00807 0.98817 0.94546 1.21675 1.01331 0.94824 0.97723 0.91647 0.92066 0.92291 0.76795 0.89267 0.89265 0.91859 0.91848 0.93518 0.93514 0.96593 0.96592 0.93118 0.90624 0.91284 0.91700 0.92009 0.91996 0.92214 0.92030 0.92024 0.91996 0.91236 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 8.78 37.16 0.33 -1.19 16 2 C 0.14 1.37 2.40 -67.93 -0.16 1.20 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 4 N -0.73 -7.47 5.00 -53.81 -0.27 -7.74 16 5 C 0.51 7.25 7.79 -10.99 -0.09 7.16 16 6 O -0.54 -9.90 15.64 5.56 0.09 -9.81 16 7 C -0.14 -1.90 5.70 -27.88 -0.16 -2.06 16 8 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 9 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 11 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 15 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.09 -0.65 2.18 -90.62 -0.20 -0.84 16 20 C -0.11 -0.72 4.85 -26.73 -0.13 -0.85 16 21 C -0.12 -0.67 5.92 -26.73 -0.16 -0.82 16 22 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 23 C -0.12 -0.66 5.93 -26.71 -0.16 -0.81 16 24 C -0.12 -0.70 4.68 -26.71 -0.13 -0.83 16 25 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 28 H 0.40 3.01 6.87 -40.82 -0.28 2.73 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 48 H 0.06 0.34 6.51 -51.93 -0.34 0.00 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -33.33 369.19 -9.79 -43.12 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -9.07 Total: -3.30 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.82 Total: -17.86 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.47 Total: -34.80 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.33 -9.79 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588159282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.919 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds