Wall clock time and date at job start Tue Mar 31 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 108.45295 * 2 1 4 4 C 1.47093 * 108.51098 * 117.68909 * 2 1 3 5 5 C 1.54871 * 110.32164 * 183.89643 * 4 2 1 6 6 N 1.44576 * 109.60388 * 288.73585 * 5 4 2 7 7 C 1.34777 * 118.64372 * 270.74938 * 6 5 4 8 8 O 1.21288 * 119.99788 * 179.97438 * 7 6 5 9 9 C 1.50703 * 120.00105 * 359.97438 * 7 6 5 10 10 C 1.52998 * 109.47165 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46994 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46994 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47165 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00309 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99887 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47277 * 89.99715 * 17 15 13 19 19 H 1.48506 * 109.47349 * 209.99907 * 17 15 13 20 20 H 1.48502 * 109.46878 * 329.99718 * 17 15 13 21 21 C 1.47606 * 122.71282 * 90.72044 * 6 5 4 22 22 C 1.53944 * 112.14186 * 317.87328 * 21 6 5 23 23 H 1.09006 * 109.36564 * 79.50138 * 22 21 6 24 24 C 1.53006 * 109.36760 * 199.23964 * 22 21 6 25 25 C 1.50875 * 110.09567 * 319.43196 * 22 21 6 26 26 H 1.08996 * 109.47131 * 302.31167 * 1 2 3 27 27 H 1.09000 * 109.47132 * 62.31058 * 1 2 3 28 28 H 1.09001 * 109.47411 * 182.30919 * 1 2 3 29 29 H 1.08996 * 109.32818 * 63.63771 * 4 2 1 30 30 H 1.08998 * 109.18998 * 304.06922 * 4 2 1 31 31 H 1.08998 * 109.45111 * 168.69260 * 5 4 2 32 32 H 1.09000 * 109.44658 * 48.77374 * 5 4 2 33 33 H 1.09000 * 109.46575 * 300.00273 * 9 7 6 34 34 H 1.08996 * 109.47102 * 59.99839 * 9 7 6 35 35 H 1.09000 * 109.46836 * 300.00044 * 10 9 7 36 36 H 1.08996 * 109.46928 * 59.99893 * 10 9 7 37 37 H 1.08994 * 109.47227 * 299.99822 * 11 10 9 38 38 H 1.09006 * 109.46789 * 59.99853 * 11 10 9 39 39 H 1.09011 * 109.46941 * 299.99899 * 12 11 10 40 40 H 1.08996 * 109.47446 * 60.00131 * 12 11 10 41 41 H 0.97002 * 120.00116 * 179.97438 * 16 15 13 42 42 H 1.08996 * 108.94834 * 197.18426 * 21 6 5 43 43 H 1.09000 * 108.87284 * 78.51107 * 21 6 5 44 44 H 1.09001 * 109.47002 * 59.99821 * 24 22 21 45 45 H 1.08993 * 109.46955 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.47050 * 300.00087 * 24 22 21 47 47 H 1.09006 * 109.48993 * 211.85201 * 25 22 21 48 48 H 1.08996 * 109.49307 * 331.92217 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8749 1.0339 0.0000 4 6 1.9969 -0.6481 1.2351 5 6 3.5417 -0.5840 1.3252 6 7 4.1221 -1.4781 0.3486 7 6 4.3573 -2.7571 0.7029 8 8 4.8431 -3.5284 -0.0972 9 6 4.0166 -3.2287 2.0931 10 6 4.3808 -4.7081 2.2333 11 6 4.0356 -5.1867 3.6449 12 6 4.4003 -6.6659 3.7853 13 6 4.0597 -7.1376 5.1755 14 1 3.6260 -6.4510 5.8875 15 6 4.3017 -8.4454 5.5383 16 7 4.8294 -9.2817 4.6712 17 14 3.8801 -9.0298 7.2618 18 1 2.4866 -9.5425 7.2836 19 1 4.8131 -10.1150 7.6586 20 1 4.0056 -7.8966 8.2132 21 6 4.4672 -1.0483 -1.0207 22 6 3.3813 -0.1481 -1.6373 23 1 3.4902 0.8656 -1.2514 24 6 3.5399 -0.1313 -3.1590 25 6 2.0113 -0.6713 -1.2827 26 1 -0.3633 0.5493 0.8685 27 1 -0.3633 0.4775 -0.9100 28 1 -0.3634 -1.0268 0.0414 29 1 1.6784 -1.6905 1.2382 30 1 1.5639 -0.1360 2.0943 31 1 3.8597 -0.8820 2.3243 32 1 3.8747 0.4349 1.1276 33 1 4.5790 -2.6457 2.8224 34 1 2.9489 -3.0987 2.2694 35 1 3.8188 -5.2913 1.5038 36 1 5.4486 -4.8376 2.0571 37 1 4.5979 -4.6035 4.3740 38 1 2.9677 -5.0570 3.8214 39 1 3.8383 -7.2496 3.0560 40 1 5.4681 -6.7952 3.6089 41 1 5.0000 -10.2017 4.9266 42 1 4.5931 -1.9310 -1.6475 43 1 5.4080 -0.4986 -0.9911 44 1 3.4360 -1.1449 -3.5463 45 1 2.7721 0.5061 -3.5973 46 1 4.5250 0.2571 -3.4174 47 1 1.3163 -0.4489 -2.0925 48 1 2.0616 -1.7496 -1.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:27 Heat of formation + Delta-G solvation = -80.800320 kcal Electronic energy + Delta-G solvation = -22688.551762 eV Core-core repulsion = 19548.639793 eV Total energy + Delta-G solvation = -3139.911969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61199 -38.29577 -35.07351 -34.72702 -34.51369 -32.54712 -29.81376 -29.19200 -27.05190 -26.77605 -25.12518 -23.97436 -22.27562 -20.61984 -20.33730 -19.94248 -18.77981 -16.89116 -16.58377 -16.07803 -15.96534 -15.36993 -14.92734 -14.50678 -14.39145 -13.87089 -13.58107 -13.43069 -13.35158 -13.09955 -12.69419 -12.54073 -12.23339 -12.17860 -11.92148 -11.83227 -11.67777 -11.57700 -11.54296 -10.98031 -10.86991 -10.79562 -10.78574 -10.60318 -10.48870 -10.44277 -10.35423 -9.67338 -9.57393 -9.18095 -8.94856 -8.68725 -8.28127 -5.92906 -3.95372 2.74633 2.96606 3.35447 3.41379 3.44632 4.22458 4.43061 4.46272 4.50758 4.63801 4.75966 4.76153 4.94784 5.06880 5.16653 5.25218 5.29282 5.35639 5.37107 5.41867 5.42728 5.46625 5.49845 5.56807 5.58783 5.63047 5.74549 5.77596 5.82811 5.93652 5.98066 6.00235 6.06609 6.18105 6.20660 6.34603 6.50848 6.60610 6.88256 7.05961 7.23238 7.37590 7.76907 7.93390 8.08859 8.28971 8.50617 9.12440 9.68145 11.18449 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.002932 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.890417 B = 9548.684368 C =10115.649278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.136 4.136 5 C 0.110 3.890 6 N -0.612 5.612 7 C 0.509 3.491 8 O -0.537 6.537 9 C -0.138 4.138 10 C -0.104 4.104 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.115 3.885 22 C -0.102 4.102 23 H 0.071 0.929 24 C -0.145 4.145 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 24.482 -12.104 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.175 4.175 5 C -0.014 4.014 6 N -0.346 5.346 7 C 0.299 3.701 8 O -0.413 6.413 9 C -0.178 4.178 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.007 4.007 22 C -0.121 4.121 23 H 0.090 0.910 24 C -0.203 4.203 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.610 23.902 -12.555 27.576 hybrid contribution -0.296 -0.273 0.981 1.061 sum -5.906 23.630 -11.574 26.967 Atomic orbital electron populations 1.21980 0.95360 1.01964 1.01477 1.20045 0.95902 0.99829 0.94939 0.91727 1.21393 0.95880 1.02194 0.98037 1.21584 0.92816 0.94404 0.92603 1.47757 1.63434 1.10745 1.12664 1.21179 0.77257 0.81010 0.90702 1.90684 1.43436 1.53844 1.53296 1.21857 1.03075 0.99980 0.92846 1.21459 1.02029 0.91541 0.99131 1.21641 0.99741 1.00074 0.93253 1.19095 0.96863 0.89166 0.96597 1.21288 1.41014 0.95394 0.98096 0.92769 1.25042 0.95390 0.96991 0.97165 1.69979 1.44088 1.04911 1.34519 0.86617 0.78162 0.78428 0.84908 1.20721 1.21261 1.19924 1.21858 0.96359 0.99538 0.82952 1.21329 0.95323 0.99361 0.96099 0.91023 1.21839 1.01788 1.02263 0.94384 1.21248 0.95507 1.01059 0.96753 0.92789 0.92880 0.92619 0.91249 0.90633 0.89820 0.90676 0.89254 0.89202 0.91898 0.91876 0.93526 0.93536 0.96626 0.96597 0.93062 0.89195 0.92386 0.92285 0.92313 0.92531 0.91685 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.91 37.15 0.33 -0.70 16 2 C -0.09 -0.64 2.16 -93.68 -0.20 -0.84 16 3 H 0.06 0.42 7.36 -51.93 -0.38 0.04 16 4 C -0.14 -1.04 4.79 -28.58 -0.14 -1.18 16 5 C 0.11 0.89 5.17 -4.08 -0.02 0.87 16 6 N -0.61 -6.75 2.24 -172.54 -0.39 -7.14 16 7 C 0.51 7.47 7.62 -10.98 -0.08 7.39 16 8 O -0.54 -10.08 15.26 5.55 0.08 -10.00 16 9 C -0.14 -1.92 4.20 -27.88 -0.12 -2.04 16 10 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.12 1.16 5.51 -2.94 -0.02 1.15 16 22 C -0.10 -0.78 2.54 -91.19 -0.23 -1.01 16 23 H 0.07 0.49 7.31 -51.93 -0.38 0.11 16 24 C -0.14 -0.98 8.89 37.16 0.33 -0.65 16 25 C -0.11 -0.88 4.44 -28.02 -0.12 -1.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 7.96 -51.93 -0.41 -0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.64 7.28 -51.93 -0.38 0.27 16 30 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 31 H 0.08 0.64 6.26 -51.93 -0.32 0.32 16 32 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 33 H 0.09 1.09 7.30 -51.93 -0.38 0.71 16 34 H 0.09 1.11 7.08 -51.93 -0.37 0.74 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.09 1.11 6.77 -51.93 -0.35 0.76 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.45 8.12 -51.93 -0.42 0.02 16 45 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.49 7.31 -51.93 -0.38 0.11 16 48 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -33.18 366.94 -9.33 -42.50 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -9.19 Total: -4.86 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.08 Total: -16.03 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.35 Total: -34.19 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.18 -9.33 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.296 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds