Wall clock time and date at job start Tue Mar 31 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 108.45295 * 2 1 4 4 C 1.47093 * 108.51098 * 117.68909 * 2 1 3 5 5 C 1.54871 * 110.32164 * 183.89643 * 4 2 1 6 6 N 1.44576 * 109.60388 * 288.73585 * 5 4 2 7 7 C 1.34777 * 118.64372 * 270.74938 * 6 5 4 8 8 O 1.21288 * 119.99788 * 179.97438 * 7 6 5 9 9 C 1.50703 * 120.00105 * 359.97438 * 7 6 5 10 10 C 1.52998 * 109.47165 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46994 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46994 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47165 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00309 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99887 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47277 * 89.99715 * 17 15 13 19 19 H 1.48506 * 109.47349 * 209.99907 * 17 15 13 20 20 H 1.48502 * 109.46878 * 329.99718 * 17 15 13 21 21 C 1.47606 * 122.71282 * 90.72044 * 6 5 4 22 22 C 1.53944 * 112.14186 * 317.87328 * 21 6 5 23 23 H 1.09006 * 109.36564 * 79.50138 * 22 21 6 24 24 C 1.53006 * 109.36760 * 199.23964 * 22 21 6 25 25 C 1.50875 * 110.09567 * 319.43196 * 22 21 6 26 26 H 1.08996 * 109.47131 * 302.31167 * 1 2 3 27 27 H 1.09000 * 109.47132 * 62.31058 * 1 2 3 28 28 H 1.09001 * 109.47411 * 182.30919 * 1 2 3 29 29 H 1.08996 * 109.32818 * 63.63771 * 4 2 1 30 30 H 1.08998 * 109.18998 * 304.06922 * 4 2 1 31 31 H 1.08998 * 109.45111 * 168.69260 * 5 4 2 32 32 H 1.09000 * 109.44658 * 48.77374 * 5 4 2 33 33 H 1.09000 * 109.46575 * 300.00273 * 9 7 6 34 34 H 1.08996 * 109.47102 * 59.99839 * 9 7 6 35 35 H 1.09000 * 109.46836 * 300.00044 * 10 9 7 36 36 H 1.08996 * 109.46928 * 59.99893 * 10 9 7 37 37 H 1.08994 * 109.47227 * 299.99822 * 11 10 9 38 38 H 1.09006 * 109.46789 * 59.99853 * 11 10 9 39 39 H 1.09011 * 109.46941 * 299.99899 * 12 11 10 40 40 H 1.08996 * 109.47446 * 60.00131 * 12 11 10 41 41 H 0.97002 * 120.00116 * 179.97438 * 16 15 13 42 42 H 1.08996 * 108.94834 * 197.18426 * 21 6 5 43 43 H 1.09000 * 108.87284 * 78.51107 * 21 6 5 44 44 H 1.09001 * 109.47002 * 59.99821 * 24 22 21 45 45 H 1.08993 * 109.46955 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.47050 * 300.00087 * 24 22 21 47 47 H 1.09006 * 109.48993 * 211.85201 * 25 22 21 48 48 H 1.08996 * 109.49307 * 331.92217 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8749 1.0339 0.0000 4 6 1.9969 -0.6481 1.2351 5 6 3.5417 -0.5840 1.3252 6 7 4.1221 -1.4781 0.3486 7 6 4.3573 -2.7571 0.7029 8 8 4.8431 -3.5284 -0.0972 9 6 4.0166 -3.2287 2.0931 10 6 4.3808 -4.7081 2.2333 11 6 4.0356 -5.1867 3.6449 12 6 4.4003 -6.6659 3.7853 13 6 4.0597 -7.1376 5.1755 14 1 3.6260 -6.4510 5.8875 15 6 4.3017 -8.4454 5.5383 16 7 4.8294 -9.2817 4.6712 17 14 3.8801 -9.0298 7.2618 18 1 2.4866 -9.5425 7.2836 19 1 4.8131 -10.1150 7.6586 20 1 4.0056 -7.8966 8.2132 21 6 4.4672 -1.0483 -1.0207 22 6 3.3813 -0.1481 -1.6373 23 1 3.4902 0.8656 -1.2514 24 6 3.5399 -0.1313 -3.1590 25 6 2.0113 -0.6713 -1.2827 26 1 -0.3633 0.5493 0.8685 27 1 -0.3633 0.4775 -0.9100 28 1 -0.3634 -1.0268 0.0414 29 1 1.6784 -1.6905 1.2382 30 1 1.5639 -0.1360 2.0943 31 1 3.8597 -0.8820 2.3243 32 1 3.8747 0.4349 1.1276 33 1 4.5790 -2.6457 2.8224 34 1 2.9489 -3.0987 2.2694 35 1 3.8188 -5.2913 1.5038 36 1 5.4486 -4.8376 2.0571 37 1 4.5979 -4.6035 4.3740 38 1 2.9677 -5.0570 3.8214 39 1 3.8383 -7.2496 3.0560 40 1 5.4681 -6.7952 3.6089 41 1 5.0000 -10.2017 4.9266 42 1 4.5931 -1.9310 -1.6475 43 1 5.4080 -0.4986 -0.9911 44 1 3.4360 -1.1449 -3.5463 45 1 2.7721 0.5061 -3.5973 46 1 4.5250 0.2571 -3.4174 47 1 1.3163 -0.4489 -2.0925 48 1 2.0616 -1.7496 -1.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588162191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:26 Heat of formation + Delta-G solvation = -98.695995 kcal Electronic energy + Delta-G solvation = -22689.327777 eV Core-core repulsion = 19548.639793 eV Total energy + Delta-G solvation = -3140.687984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53779 -39.22135 -36.68661 -35.62760 -35.35391 -34.52769 -31.52272 -29.87501 -28.20697 -27.55580 -26.58534 -24.77947 -23.90372 -21.85499 -21.21389 -21.06353 -19.72690 -18.43995 -17.89855 -17.38121 -17.01625 -16.50083 -16.26872 -15.79623 -15.48217 -14.82675 -14.62223 -14.53433 -14.18926 -14.01058 -13.85499 -13.68873 -13.57531 -13.26220 -13.19011 -12.83949 -12.77629 -12.60820 -12.52261 -12.36484 -12.33045 -12.14742 -12.12511 -11.55088 -11.43275 -11.40224 -11.32675 -11.30651 -11.21394 -11.11015 -10.67818 -10.55190 -9.59539 -8.18633 -6.31072 1.40273 1.42816 1.53908 1.62183 2.04662 2.42071 3.14003 3.51847 3.75873 3.81784 3.86861 4.01100 4.03187 4.10443 4.13480 4.29303 4.45949 4.56351 4.57726 4.62237 4.70591 4.73050 4.73939 4.78773 4.83478 4.84778 4.87906 4.95520 5.02075 5.06234 5.11003 5.17260 5.19119 5.28308 5.32341 5.35227 5.37736 5.43103 5.45571 5.55900 5.58890 5.70858 5.77307 5.87566 6.25034 6.40566 6.87354 7.20848 7.38637 8.93766 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.002932 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.890417 B = 9548.684368 C =10115.649278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.083 0.917 4 C -0.134 4.134 5 C 0.101 3.899 6 N -0.600 5.600 7 C 0.504 3.496 8 O -0.591 6.591 9 C -0.126 4.126 10 C -0.095 4.095 11 C -0.094 4.094 12 C 0.019 3.981 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.258 1.258 21 C 0.112 3.888 22 C -0.092 4.092 23 H 0.093 0.907 24 C -0.144 4.144 25 C -0.107 4.107 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.060 0.940 39 H -0.017 1.017 40 H -0.016 1.016 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 27.646 -10.359 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.172 4.172 5 C -0.022 4.022 6 N -0.332 5.332 7 C 0.293 3.707 8 O -0.472 6.472 9 C -0.166 4.166 10 C -0.133 4.133 11 C -0.131 4.131 12 C -0.018 4.018 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.204 4.204 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.182 1.182 21 C -0.010 4.010 22 C -0.111 4.111 23 H 0.112 0.888 24 C -0.202 4.202 25 C -0.144 4.144 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.001 0.999 40 H 0.003 0.997 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.821 27.131 -10.804 29.989 hybrid contribution 0.078 -1.245 0.366 1.300 sum -6.744 25.886 -10.438 28.714 Atomic orbital electron populations 1.21963 0.95154 1.01275 1.02240 1.20051 0.96066 1.00488 0.93994 0.89876 1.21385 0.95416 1.01284 0.99127 1.21916 0.93086 0.94939 0.92214 1.47801 1.61988 1.09846 1.13538 1.21304 0.76931 0.81923 0.90499 1.90668 1.46288 1.55602 1.54664 1.21729 1.04837 0.96652 0.93360 1.21248 1.00345 0.94807 0.96943 1.21435 1.00684 0.95974 0.95043 1.19051 0.94356 0.93034 0.95349 1.21753 1.41077 0.96107 0.98987 0.91493 1.26108 0.94995 0.97191 1.02153 1.70140 1.45216 1.05410 1.37158 0.85373 0.78101 0.78164 0.78946 1.19695 1.20932 1.18211 1.21965 0.98058 0.98843 0.82174 1.21295 0.93884 0.99535 0.96418 0.88835 1.21838 1.02762 1.01711 0.93848 1.21240 0.96146 0.99146 0.97903 0.91801 0.92352 0.94064 0.93307 0.88521 0.88745 0.88152 0.86412 0.86946 0.94217 0.93948 0.91950 0.92125 0.99873 0.99742 0.92850 0.92270 0.91247 0.93847 0.90868 0.91800 0.91037 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.91 71.98 0.64 -1.08 16 2 C -0.09 -1.02 2.16 -12.77 -0.03 -1.05 16 3 H 0.08 0.72 7.36 -2.39 -0.02 0.70 16 4 C -0.13 -1.66 4.79 29.40 0.14 -1.52 16 5 C 0.10 1.31 5.17 87.38 0.45 1.77 16 6 N -0.60 -12.56 2.24 -818.17 -1.83 -14.39 16 7 C 0.50 14.89 7.62 87.66 0.67 15.56 16 8 O -0.59 -23.53 15.26 -3.06 -0.05 -23.57 16 9 C -0.13 -3.39 4.20 29.85 0.13 -3.27 16 10 C -0.10 -3.62 4.50 30.59 0.14 -3.48 16 11 C -0.09 -3.94 5.15 30.59 0.16 -3.78 16 12 C 0.02 1.08 4.97 29.85 0.15 1.23 16 13 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 14 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 15 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 16 N -0.94 -59.80 13.29 21.45 0.28 -59.52 16 17 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 C 0.11 2.19 5.51 86.49 0.48 2.67 16 22 C -0.09 -1.24 2.54 -11.16 -0.03 -1.27 16 23 H 0.09 0.91 7.31 -2.38 -0.02 0.89 16 24 C -0.14 -1.77 8.89 71.98 0.64 -1.14 16 25 C -0.11 -1.61 4.44 29.76 0.13 -1.48 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.61 7.96 -2.39 -0.02 0.59 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.83 7.28 -2.39 -0.02 0.81 16 30 H 0.10 0.84 8.11 -2.39 -0.02 0.82 16 31 H 0.09 1.07 6.26 -2.39 -0.01 1.06 16 32 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 33 H 0.12 2.52 7.30 -2.39 -0.02 2.50 16 34 H 0.11 2.54 7.08 -2.39 -0.02 2.52 16 35 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 36 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 39 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.06 1.55 6.77 -2.39 -0.02 1.53 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.04 0.67 8.12 -2.39 -0.02 0.65 16 45 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.98 7.31 -2.38 -0.02 0.96 16 48 H 0.03 0.74 7.48 -2.39 -0.02 0.73 16 Total: -1.00 -75.67 366.94 5.68 -70.00 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.88 Total: 8.67 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.36 Total: -28.37 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -1.55 Total: -73.91 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.67 5.68 -70.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.696 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds