Wall clock time and date at job start Tue Mar 31 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.32750 * 2 1 4 4 C 1.52528 * 110.25160 * 237.99403 * 2 1 3 5 5 C 1.46756 * 114.24727 * 151.51667 * 4 2 1 6 6 N 1.50162 * 107.26428 * 58.55158 * 5 4 2 7 7 C 1.34779 * 120.53779 * 109.63945 * 6 5 4 8 8 O 1.21286 * 120.00040 * 179.72257 * 7 6 5 9 9 C 1.50698 * 120.00201 * 359.72526 * 7 6 5 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00636 * 17 15 13 19 19 H 1.48494 * 109.47178 * 210.00332 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00579 * 17 15 13 21 21 C 1.43435 * 118.92450 * 289.36799 * 6 5 4 22 22 C 1.54901 * 116.08197 * 91.81970 * 21 6 5 23 23 H 1.08995 * 109.35991 * 78.84275 * 22 21 6 24 24 C 1.53001 * 109.35948 * 198.57049 * 22 21 6 25 25 C 1.50130 * 110.25364 * 122.01245 * 2 1 3 26 26 H 1.08994 * 109.47294 * 297.98446 * 1 2 3 27 27 H 1.09001 * 109.47408 * 57.99224 * 1 2 3 28 28 H 1.09000 * 109.46903 * 177.98760 * 1 2 3 29 29 H 1.09003 * 108.52065 * 272.85679 * 4 2 1 30 30 H 1.09000 * 108.51834 * 30.52780 * 4 2 1 31 31 H 1.09001 * 109.95681 * 299.14039 * 5 4 2 32 32 H 1.09006 * 110.00132 * 177.98941 * 5 4 2 33 33 H 1.09002 * 109.47210 * 59.99599 * 9 7 6 34 34 H 1.09001 * 109.46665 * 299.99857 * 9 7 6 35 35 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 36 36 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 39 39 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 40 40 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 41 41 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 42 42 H 1.09007 * 108.16019 * 213.53435 * 21 6 5 43 43 H 1.09002 * 108.16169 * 330.30594 * 21 6 5 44 44 H 1.08997 * 109.47143 * 59.99808 * 24 22 21 45 45 H 1.08998 * 109.46951 * 179.97438 * 24 22 21 46 46 H 1.09000 * 109.47088 * 299.99657 * 24 22 21 47 47 H 1.09002 * 109.20954 * 96.30681 * 25 2 1 48 48 H 1.09000 * 109.20424 * 337.00243 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0579 -0.7584 -1.2135 5 6 3.3699 -0.3012 -1.6860 6 7 4.3329 -0.4542 -0.5440 7 6 5.2934 -1.3991 -0.5799 8 8 6.0692 -1.5107 0.3456 9 6 5.4033 -2.3168 -1.7702 10 6 6.5670 -3.2876 -1.5600 11 6 6.6782 -4.2197 -2.7681 12 6 7.8416 -5.1909 -2.5575 13 6 7.9507 -6.1095 -3.7472 14 1 7.2597 -6.0102 -4.5712 15 6 8.9334 -7.0759 -3.7841 16 7 9.7752 -7.1964 -2.7810 17 14 9.0682 -8.2150 -5.2585 18 1 9.9721 -7.6105 -6.2700 19 1 9.6172 -9.5245 -4.8238 20 1 7.7226 -8.4154 -5.8539 21 6 4.2179 0.4255 0.5831 22 6 3.3294 -0.0745 1.7493 23 1 3.8876 -0.7969 2.3448 24 6 2.9343 1.1120 2.6307 25 6 2.0496 -0.7466 1.1943 26 1 -0.3633 0.4822 0.9074 27 1 -0.3634 0.5447 -0.8714 28 1 -0.3633 -1.0270 -0.0361 29 1 2.1294 -1.8154 -0.9569 30 1 1.3425 -0.6487 -2.0285 31 1 3.3137 0.7455 -1.9849 32 1 3.6958 -0.9106 -2.5290 33 1 5.5809 -1.7264 -2.6691 34 1 4.4763 -2.8792 -1.8821 35 1 6.3898 -3.8780 -0.6610 36 1 7.4938 -2.7249 -1.4482 37 1 6.8552 -3.6296 -3.6673 38 1 5.7513 -4.7824 -2.8793 39 1 8.7687 -4.6285 -2.4460 40 1 7.6642 -5.7809 -1.6584 41 1 10.4668 -7.8761 -2.8071 42 1 5.2187 0.6101 0.9736 43 1 3.8118 1.3746 0.2333 44 1 2.3800 1.8379 2.0358 45 1 2.3086 0.7622 3.4518 46 1 3.8324 1.5813 3.0323 47 1 2.2799 -1.7718 0.9041 48 1 1.2848 -0.7578 1.9708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:29 Heat of formation + Delta-G solvation = -75.652195 kcal Electronic energy + Delta-G solvation = -22657.819701 eV Core-core repulsion = 19518.130971 eV Total energy + Delta-G solvation = -3139.688729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61185 -38.32476 -34.96953 -34.69736 -34.15976 -32.55669 -29.84391 -29.64311 -27.09734 -26.80931 -24.97549 -23.51993 -22.45807 -21.56390 -19.98652 -19.59768 -18.64932 -16.90703 -16.49608 -16.08404 -15.84843 -15.37696 -14.85278 -14.43152 -14.32621 -14.05684 -13.74835 -13.52630 -13.41680 -13.09278 -12.59345 -12.53854 -12.28674 -12.18549 -11.97594 -11.74283 -11.61332 -11.53406 -11.43725 -11.09086 -10.96112 -10.77062 -10.58004 -10.51094 -10.47860 -10.44662 -10.34967 -9.67897 -9.57996 -9.18560 -8.95245 -8.71411 -8.28428 -5.93135 -3.95629 2.75419 2.93153 3.35282 3.41219 3.44438 4.28032 4.38768 4.46156 4.50824 4.69199 4.74745 4.84323 4.90001 5.01037 5.14575 5.22979 5.32102 5.36057 5.38655 5.40938 5.42386 5.43264 5.44573 5.53378 5.60662 5.68648 5.76760 5.80315 5.85593 5.89179 6.00053 6.02181 6.12781 6.17309 6.17872 6.33540 6.52701 6.62386 6.87819 7.05307 7.22891 7.35647 7.76642 7.93109 8.08613 8.31876 8.50329 9.12184 9.67882 11.18242 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030757 B = 0.002825 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.145480 B = 9909.357393 C =10403.669634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.141 4.141 5 C 0.113 3.887 6 N -0.615 5.615 7 C 0.513 3.487 8 O -0.534 6.534 9 C -0.137 4.137 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.121 3.879 22 C -0.108 4.108 23 H 0.073 0.927 24 C -0.141 4.141 25 C -0.110 4.110 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.015 19.290 5.899 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.179 4.179 5 C -0.009 4.009 6 N -0.349 5.349 7 C 0.303 3.697 8 O -0.410 6.410 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.004 4.004 22 C -0.128 4.128 23 H 0.092 0.908 24 C -0.199 4.199 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.427 19.109 6.451 28.003 hybrid contribution 0.045 -0.686 -0.779 1.039 sum -19.382 18.423 5.672 27.336 Atomic orbital electron populations 1.21856 0.94826 1.01813 1.01528 1.20579 0.95351 0.99763 0.95082 0.90559 1.21073 0.96881 1.01225 0.98756 1.21248 0.88361 1.02248 0.88993 1.48171 1.32478 1.35486 1.18764 1.21079 0.79349 0.80350 0.88951 1.90696 1.41801 1.69797 1.38685 1.21806 1.02276 0.97631 0.96003 1.21453 0.96136 0.96492 1.00050 1.21643 1.00655 0.97115 0.95305 1.19094 0.92462 0.93271 0.96898 1.21289 1.14450 1.15959 1.04115 0.92771 1.25043 0.95866 0.97581 0.96096 1.69975 1.18172 1.34438 1.30909 0.86615 0.78203 0.80294 0.82994 1.20714 1.21262 1.19924 1.20943 1.00454 0.91960 0.87047 1.22192 0.96119 0.98028 0.96503 0.90845 1.21776 1.01241 0.97673 0.99230 1.21696 0.96394 0.99334 0.97337 0.92696 0.92733 0.92655 0.91258 0.91208 0.90754 0.88843 0.89295 0.89363 0.91896 0.91849 0.93523 0.93547 0.96606 0.96610 0.93054 0.90975 0.91649 0.92687 0.92460 0.92604 0.91959 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.83 37.15 0.33 -0.52 16 2 C -0.09 -0.61 2.43 -92.29 -0.22 -0.84 16 3 H 0.08 0.51 5.72 -51.93 -0.30 0.22 16 4 C -0.14 -0.99 4.76 -29.96 -0.14 -1.14 16 5 C 0.11 0.86 5.93 -4.98 -0.03 0.83 16 6 N -0.61 -6.75 2.56 -175.26 -0.45 -7.20 16 7 C 0.51 7.55 7.68 -10.99 -0.08 7.46 16 8 O -0.53 -10.10 15.59 5.55 0.09 -10.02 16 9 C -0.14 -1.91 4.07 -27.89 -0.11 -2.02 16 10 C -0.10 -1.91 4.50 -26.74 -0.12 -2.03 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.12 1.23 4.34 -4.66 -0.02 1.21 16 22 C -0.11 -1.01 3.22 -88.65 -0.29 -1.30 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 24 C -0.14 -1.03 8.93 37.16 0.33 -0.70 16 25 C -0.11 -0.93 4.68 -27.19 -0.13 -1.06 16 26 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.58 6.93 -51.93 -0.36 0.22 16 30 H 0.07 0.40 7.82 -51.93 -0.41 -0.01 16 31 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.09 0.66 6.10 -51.93 -0.32 0.34 16 33 H 0.09 1.07 7.64 -51.93 -0.40 0.67 16 34 H 0.09 1.07 8.02 -51.93 -0.42 0.66 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.07 0.88 7.42 -51.93 -0.39 0.50 16 43 H 0.07 0.53 6.65 -51.93 -0.35 0.19 16 44 H 0.05 0.35 7.55 -51.93 -0.39 -0.05 16 45 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.63 6.83 -51.93 -0.35 0.28 16 48 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -33.41 366.30 -9.39 -42.80 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -9.09 Total: -5.01 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.18 Total: -16.06 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.29 Total: -34.27 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.41 -9.39 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.855 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds