Wall clock time and date at job start Tue Mar 31 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 108.45067 * 2 1 4 4 C 1.50996 * 108.61531 * 117.87445 * 2 1 3 5 5 C 1.55159 * 108.70121 * 214.14140 * 4 2 1 6 6 N 1.40517 * 110.18678 * 288.51106 * 5 4 2 7 7 C 1.34777 * 118.50043 * 239.08212 * 6 5 4 8 8 O 1.21279 * 120.00162 * 180.02562 * 7 6 5 9 9 C 1.50706 * 120.00146 * 359.97438 * 7 6 5 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46692 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47025 * 119.99570 * 17 15 13 20 20 H 1.48492 * 109.46854 * 239.99727 * 17 15 13 21 21 C 1.47413 * 122.99887 * 59.35853 * 6 5 4 22 22 C 1.51552 * 106.31132 * 280.71015 * 21 6 5 23 23 H 1.08999 * 109.00749 * 329.37931 * 22 21 6 24 24 C 1.52998 * 108.83999 * 210.70264 * 22 21 6 25 25 C 1.52839 * 112.14825 * 90.09524 * 22 21 6 26 26 H 1.08993 * 109.46999 * 302.12688 * 1 2 3 27 27 H 1.08996 * 109.47012 * 62.12678 * 1 2 3 28 28 H 1.08997 * 109.46904 * 182.12398 * 1 2 3 29 29 H 1.09002 * 109.59762 * 94.38156 * 4 2 1 30 30 H 1.08997 * 109.73136 * 333.98332 * 4 2 1 31 31 H 1.09004 * 109.35069 * 168.29300 * 5 4 2 32 32 H 1.08993 * 109.35223 * 48.72819 * 5 4 2 33 33 H 1.09000 * 109.46974 * 60.00144 * 9 7 6 34 34 H 1.09001 * 109.46547 * 300.00234 * 9 7 6 35 35 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 36 36 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 37 37 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 38 38 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 39 39 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 40 40 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 41 41 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 42 42 H 1.08997 * 110.02680 * 39.91006 * 21 6 5 43 43 H 1.09001 * 110.02869 * 161.38069 * 21 6 5 44 44 H 1.09003 * 109.47127 * 297.43899 * 24 22 21 45 45 H 1.09004 * 109.47334 * 57.43881 * 24 22 21 46 46 H 1.08999 * 109.47256 * 177.43996 * 24 22 21 47 47 H 1.09006 * 108.76676 * 197.07457 * 25 22 21 48 48 H 1.09001 * 108.76696 * 78.92600 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8750 1.0340 0.0000 4 6 2.0121 -0.6690 1.2649 5 6 3.3236 0.0212 1.7241 6 7 4.3774 -0.3144 0.8572 7 6 5.4605 -0.9309 1.3701 8 8 6.3860 -1.2325 0.6467 9 6 5.5222 -1.2446 2.8429 10 6 6.8480 -1.9388 3.1613 11 6 6.9108 -2.2566 4.6567 12 6 8.2363 -2.9514 4.9750 13 6 8.2979 -3.2651 6.4478 14 1 7.4740 -2.9962 7.0921 15 6 9.4062 -3.8953 6.9727 16 7 10.4094 -4.2232 6.1879 17 14 9.4824 -4.2848 8.7980 18 1 8.2362 -3.8169 9.4563 19 1 9.6215 -5.7512 8.9859 20 1 10.6501 -3.5952 9.4029 21 6 4.3547 -0.0176 -0.5865 22 6 3.4936 -1.0873 -1.2275 23 1 3.5832 -2.0080 -0.6509 24 6 3.9981 -1.3414 -2.6494 25 6 2.0212 -0.6818 -1.2886 26 1 -0.3633 0.5465 0.8702 27 1 -0.3633 0.4804 -0.9084 28 1 -0.3633 -1.0269 0.0381 29 1 2.2031 -1.7244 1.0704 30 1 1.2558 -0.5719 2.0438 31 1 3.5692 -0.3056 2.7346 32 1 3.1833 1.1021 1.7205 33 1 4.6944 -1.9017 3.1094 34 1 5.4504 -0.3194 3.4147 35 1 7.6756 -1.2814 2.8949 36 1 6.9202 -2.8640 2.5896 37 1 6.8387 -1.3313 5.2281 38 1 6.0832 -2.9139 4.9235 39 1 8.3080 -3.8768 4.4036 40 1 9.0641 -2.2945 4.7081 41 1 11.1890 -4.6670 6.5570 42 1 3.9194 0.9667 -0.7585 43 1 5.3661 -0.0557 -0.9914 44 1 3.8910 -0.4321 -3.2409 45 1 5.0483 -1.6316 -2.6159 46 1 3.4144 -2.1416 -3.1045 47 1 1.4190 -1.5730 -1.4653 48 1 1.8809 0.0045 -2.1238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:32 Heat of formation + Delta-G solvation = -76.883451 kcal Electronic energy + Delta-G solvation = -22554.189681 eV Core-core repulsion = 19414.447560 eV Total energy + Delta-G solvation = -3139.742121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77730 -38.20676 -35.04934 -34.96221 -34.33683 -32.56363 -29.86136 -29.14555 -27.11475 -26.82777 -25.12983 -23.64612 -22.30382 -21.54205 -20.01170 -19.39416 -18.98747 -17.01454 -16.38393 -16.09244 -15.99811 -15.69229 -14.90053 -14.45258 -14.19874 -13.87099 -13.76003 -13.48647 -13.40300 -12.89231 -12.67449 -12.54691 -12.46369 -12.20590 -12.00238 -11.72240 -11.57036 -11.53426 -11.32300 -11.28918 -10.97893 -10.79767 -10.75607 -10.50893 -10.47047 -10.42755 -10.35497 -9.65603 -9.58475 -9.18906 -8.94428 -8.68292 -8.28901 -5.93458 -3.95832 2.71740 3.04193 3.34357 3.41454 3.45469 4.33538 4.35694 4.48741 4.50588 4.65909 4.74537 4.78049 4.94787 5.06761 5.13824 5.24332 5.28540 5.31031 5.36548 5.38178 5.41744 5.42810 5.50497 5.56365 5.60647 5.62446 5.72507 5.75865 5.85804 5.88603 5.94421 6.04132 6.05911 6.16987 6.18072 6.33705 6.54187 6.62341 6.87349 7.05236 7.22833 7.41525 7.76730 7.92813 8.08354 8.27003 8.50166 9.12213 9.67778 11.17960 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.002787 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.071411 B =10042.873790 C =10666.633280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.103 3.897 6 N -0.610 5.610 7 C 0.506 3.494 8 O -0.533 6.533 9 C -0.140 4.140 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.120 3.880 22 C -0.107 4.107 23 H 0.074 0.926 24 C -0.147 4.147 25 C -0.105 4.105 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.172 10.675 -15.454 28.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.172 4.172 5 C -0.022 4.022 6 N -0.343 5.343 7 C 0.295 3.705 8 O -0.408 6.408 9 C -0.180 4.180 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.018 4.018 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.001 4.001 22 C -0.127 4.127 23 H 0.092 0.908 24 C -0.205 4.205 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.523 10.448 -15.846 27.955 hybrid contribution -0.081 -0.228 1.000 1.029 sum -20.604 10.220 -14.846 27.375 Atomic orbital electron populations 1.21952 0.95297 1.01765 1.01547 1.20965 0.95567 0.99985 0.94578 0.91604 1.22115 0.97131 1.00718 0.97227 1.21033 0.87242 0.99343 0.94572 1.46834 1.18323 1.60183 1.08952 1.21274 0.81428 0.76488 0.91283 1.90680 1.36813 1.51585 1.61731 1.21845 1.02061 1.02625 0.91421 1.21461 0.94107 1.00285 0.98265 1.21645 1.00953 0.99821 0.92322 1.19100 0.91069 0.95460 0.96137 1.21326 1.02553 1.37863 0.93978 0.92713 1.25046 0.95827 0.95968 0.97777 1.69985 1.07056 1.41559 1.34903 0.86559 0.77921 0.77966 0.85690 1.19775 1.21059 1.21063 1.21540 1.01466 0.97635 0.79500 1.21316 0.94580 0.99665 0.97090 0.90784 1.21882 1.01594 1.01404 0.95624 1.21765 0.95170 1.00396 0.96921 0.92623 0.92953 0.92727 0.91191 0.90636 0.89062 0.92129 0.89166 0.89191 0.91842 0.91856 0.93510 0.93524 0.96602 0.96595 0.93111 0.90951 0.88743 0.92713 0.92076 0.92735 0.92213 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.77 37.16 0.33 -0.54 16 2 C -0.09 -0.62 2.15 -91.19 -0.20 -0.81 16 3 H 0.07 0.44 6.85 -51.93 -0.36 0.09 16 4 C -0.13 -0.97 5.25 -26.60 -0.14 -1.11 16 5 C 0.10 0.85 5.82 -5.99 -0.03 0.82 16 6 N -0.61 -6.67 2.36 -176.90 -0.42 -7.08 16 7 C 0.51 7.32 7.61 -10.98 -0.08 7.24 16 8 O -0.53 -9.81 15.29 5.56 0.08 -9.73 16 9 C -0.14 -1.92 3.95 -27.88 -0.11 -2.03 16 10 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 11 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 C 0.12 1.20 5.23 -4.28 -0.02 1.18 16 22 C -0.11 -0.96 2.26 -91.44 -0.21 -1.17 16 23 H 0.07 0.82 7.42 -51.93 -0.39 0.43 16 24 C -0.15 -1.22 8.88 37.16 0.33 -0.89 16 25 C -0.10 -0.75 4.54 -26.38 -0.12 -0.87 16 26 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.60 7.34 -51.93 -0.38 0.22 16 30 H 0.08 0.46 7.68 -51.93 -0.40 0.07 16 31 H 0.09 0.72 5.33 -51.93 -0.28 0.45 16 32 H 0.06 0.44 7.76 -51.93 -0.40 0.04 16 33 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 34 H 0.09 1.08 7.72 -51.93 -0.40 0.68 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.60 7.25 -51.93 -0.38 0.22 16 43 H 0.09 1.12 6.66 -51.93 -0.35 0.78 16 44 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 45 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.43 7.99 -51.93 -0.41 0.02 16 48 H 0.06 0.39 7.93 -51.93 -0.41 -0.02 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -32.92 366.52 -9.31 -42.23 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -9.15 Total: -4.81 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.06 Total: -16.13 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.32 Total: -34.11 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.92 -9.31 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.654 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds