Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.35866 * 2 1 4 4 C 1.54834 * 109.36208 * 240.27214 * 2 1 3 5 5 C 1.50129 * 110.81869 * 201.06186 * 4 2 1 6 6 H 1.08995 * 110.24863 * 338.71750 * 5 4 2 7 7 C 1.52994 * 110.37356 * 216.72066 * 5 4 2 8 8 C 1.52529 * 105.41185 * 97.68565 * 5 4 2 9 9 C 1.46248 * 114.27599 * 270.59495 * 8 5 4 10 10 N 1.50164 * 107.52993 * 58.41025 * 9 8 5 11 11 C 1.34777 * 120.53664 * 109.56972 * 10 9 8 12 12 O 1.21283 * 119.99750 * 179.97438 * 11 10 9 13 13 C 1.50694 * 120.00104 * 359.97438 * 11 10 9 14 14 C 1.52997 * 109.47456 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47596 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47600 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47460 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00179 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.43437 * 118.92612 * 289.83739 * 10 9 8 26 26 H 1.09008 * 109.47343 * 179.72336 * 1 2 3 27 27 H 1.08998 * 109.47462 * 299.72769 * 1 2 3 28 28 H 1.08999 * 109.47264 * 59.73024 * 1 2 3 29 29 H 1.09001 * 109.21026 * 80.72252 * 4 2 1 30 30 H 1.09002 * 109.21438 * 321.40930 * 4 2 1 31 31 H 1.09002 * 109.46981 * 303.94317 * 7 5 4 32 32 H 1.08992 * 109.47540 * 63.94658 * 7 5 4 33 33 H 1.09001 * 109.47310 * 183.95291 * 7 5 4 34 34 H 1.08997 * 108.52503 * 149.35654 * 8 5 4 35 35 H 1.08996 * 108.40573 * 31.74475 * 8 5 4 36 36 H 1.09006 * 109.84289 * 298.90012 * 9 8 5 37 37 H 1.09003 * 109.89689 * 177.94560 * 9 8 5 38 38 H 1.08997 * 109.47353 * 60.00427 * 13 11 10 39 39 H 1.08999 * 109.47517 * 300.00283 * 13 11 10 40 40 H 1.09002 * 109.47542 * 59.99636 * 14 13 11 41 41 H 1.09006 * 109.46910 * 299.99786 * 14 13 11 42 42 H 1.09003 * 109.47604 * 59.99424 * 15 14 13 43 43 H 1.08999 * 109.47292 * 299.99789 * 15 14 13 44 44 H 1.09005 * 109.46800 * 60.00280 * 16 15 14 45 45 H 1.08998 * 109.47382 * 300.00079 * 16 15 14 46 46 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 47 47 H 1.09001 * 108.15770 * 213.03715 * 25 10 9 48 48 H 1.08996 * 108.15947 * 329.59938 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8913 1.0284 0.0000 4 6 2.0433 -0.7244 -1.2685 5 6 3.4557 -1.1966 -1.0786 6 1 3.9393 -0.6296 -0.2832 7 6 4.2440 -1.0565 -2.3823 8 6 3.3423 -2.6661 -0.6856 9 6 3.2274 -2.8963 0.7541 10 7 2.0118 -2.1572 1.2347 11 6 0.9113 -2.8301 1.6254 12 8 -0.0650 -2.2233 2.0123 13 6 0.8939 -4.3363 1.5816 14 6 -0.4626 -4.8453 2.0733 15 6 -0.4801 -6.3745 2.0294 16 6 -1.8364 -6.8834 2.5216 17 6 -1.8538 -8.3896 2.4778 18 1 -0.9846 -8.9300 2.1329 19 6 -2.9798 -9.0781 2.8770 20 7 -4.0384 -8.4201 3.2965 21 14 -3.0017 -10.9451 2.8220 22 1 -3.4990 -11.3955 1.4973 23 1 -1.6264 -11.4627 3.0365 24 1 -3.8968 -11.4613 3.8885 25 6 2.0387 -0.7235 1.2657 26 1 -0.3634 -1.0277 -0.0050 27 1 -0.3634 0.5096 0.8924 28 1 -0.3634 0.5180 -0.8875 29 1 2.0057 -0.0373 -2.1139 30 1 1.4032 -1.5820 -1.4757 31 1 3.7320 -1.5995 -3.1767 32 1 4.3173 -0.0028 -2.6511 33 1 5.2446 -1.4676 -2.2479 34 1 4.2248 -3.1913 -1.0508 35 1 2.4636 -3.0863 -1.1746 36 1 4.1151 -2.5181 1.2613 37 1 3.1145 -3.9623 0.9515 38 1 1.6833 -4.7277 2.2232 39 1 1.0580 -4.6720 0.5577 40 1 -1.2520 -4.4539 1.4314 41 1 -0.6272 -4.5097 3.0972 42 1 0.3091 -6.7656 2.6715 43 1 -0.3154 -6.7105 1.0056 44 1 -2.6259 -6.4925 1.8797 45 1 -2.0008 -6.5475 3.5454 46 1 -4.8307 -8.9044 3.5770 47 1 1.4325 -0.3905 2.1082 48 1 3.0657 -0.4068 1.4472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = -74.770947 kcal Electronic energy + Delta-G solvation = -22844.705392 eV Core-core repulsion = 19705.054877 eV Total energy + Delta-G solvation = -3139.650516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65183 -38.22169 -35.00973 -34.58387 -34.20320 -32.54075 -29.82005 -29.66474 -27.05457 -26.76296 -25.06348 -23.61206 -22.40010 -21.01148 -20.08513 -19.90422 -18.52179 -16.90510 -16.38303 -16.09028 -16.06590 -15.16298 -14.77339 -14.60649 -14.39527 -13.94303 -13.67931 -13.53330 -13.34237 -12.79335 -12.65510 -12.54446 -12.49258 -12.10506 -11.82869 -11.66660 -11.59164 -11.46544 -11.28795 -10.99133 -10.92587 -10.71832 -10.58708 -10.54739 -10.50097 -10.46444 -10.34889 -9.65090 -9.58076 -9.18346 -8.95309 -8.67812 -8.28517 -5.93306 -3.95744 2.77140 2.95158 3.35205 3.41145 3.44358 4.26648 4.40675 4.47636 4.50861 4.70884 4.79830 4.88794 4.92860 5.00833 5.18058 5.25859 5.32903 5.39030 5.41459 5.42904 5.43374 5.49128 5.55595 5.63075 5.69242 5.71084 5.82946 5.86995 5.90291 5.93759 6.03622 6.08704 6.15051 6.17759 6.32837 6.37080 6.54295 6.64110 6.87808 7.05306 7.22909 7.37202 7.76486 7.92956 8.08472 8.34112 8.50268 9.12075 9.67762 11.18063 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027940 B = 0.002969 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.909859 B = 9429.299807 C = 9920.737407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.090 4.090 6 H 0.075 0.925 7 C -0.143 4.143 8 C -0.141 4.141 9 C 0.113 3.887 10 N -0.613 5.613 11 C 0.513 3.487 12 O -0.530 6.530 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.287 1.287 25 C 0.119 3.881 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.073 0.927 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.211 17.437 -9.503 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.109 4.109 6 H 0.094 0.906 7 C -0.200 4.200 8 C -0.179 4.179 9 C -0.008 4.008 10 N -0.348 5.348 11 C 0.302 3.698 12 O -0.405 6.405 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.213 1.213 25 C -0.006 4.006 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.489 17.725 -9.204 27.216 hybrid contribution -0.036 -1.019 -0.129 1.028 sum 18.453 16.706 -9.333 26.584 Atomic orbital electron populations 1.21825 0.94409 1.02784 1.00924 1.22182 0.96704 0.98750 0.94852 0.90653 1.21717 0.95502 1.00419 0.97136 1.20583 0.96260 0.95975 0.98043 0.90631 1.21856 0.99644 1.01539 0.96997 1.20978 1.02999 0.97104 0.96848 1.21119 0.87316 0.97983 0.94420 1.48146 1.14621 1.05919 1.66067 1.21035 0.81751 0.90822 0.76151 1.90695 1.33502 1.70414 1.45915 1.21807 1.01933 0.90702 1.03331 1.21447 0.93743 0.97187 1.01686 1.21642 1.01037 0.91954 1.00105 1.19090 0.90802 0.95358 0.96448 1.21288 0.99330 0.92091 1.43110 0.92777 1.25045 0.95749 0.98322 0.95476 1.69980 1.03862 1.35324 1.44321 0.86614 0.77860 0.85991 0.77640 1.20721 1.19916 1.21259 1.20855 1.00990 0.80858 0.97867 0.91953 0.92614 0.93552 0.92481 0.91774 0.92662 0.92717 0.92693 0.91174 0.91309 0.90799 0.88905 0.89356 0.89452 0.91908 0.91856 0.93539 0.93574 0.96639 0.96600 0.93060 0.90871 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.44 37.16 0.31 -1.31 16 2 C -0.11 -0.97 3.17 -88.92 -0.28 -1.25 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.92 4.66 -27.19 -0.13 -1.05 16 5 C -0.09 -0.61 2.49 -92.29 -0.23 -0.84 16 6 H 0.08 0.50 6.28 -51.93 -0.33 0.18 16 7 C -0.14 -0.85 8.84 37.15 0.33 -0.52 16 8 C -0.14 -0.98 4.76 -30.18 -0.14 -1.13 16 9 C 0.11 0.85 5.90 -5.20 -0.03 0.82 16 10 N -0.61 -6.56 2.58 -175.85 -0.45 -7.01 16 11 C 0.51 7.32 7.34 -10.99 -0.08 7.24 16 12 O -0.53 -9.55 13.86 5.55 0.08 -9.48 16 13 C -0.14 -1.89 4.07 -27.89 -0.11 -2.01 16 14 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 15 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 17 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.12 1.18 4.30 -4.92 -0.02 1.16 16 26 H 0.06 0.88 6.61 -51.92 -0.34 0.54 16 27 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 7.72 -51.93 -0.40 0.05 16 30 H 0.06 0.65 6.64 -51.93 -0.34 0.30 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.29 8.12 -51.93 -0.42 -0.13 16 34 H 0.07 0.40 7.79 -51.93 -0.40 -0.01 16 35 H 0.07 0.58 6.92 -51.93 -0.36 0.22 16 36 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 37 H 0.09 0.65 6.10 -51.93 -0.32 0.34 16 38 H 0.09 1.05 7.65 -51.93 -0.40 0.66 16 39 H 0.09 1.06 8.02 -51.93 -0.42 0.64 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.07 0.88 7.23 -51.93 -0.38 0.50 16 48 H 0.06 0.50 6.89 -51.93 -0.36 0.14 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -32.92 363.35 -9.45 -42.37 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -9.07 Total: -4.52 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -1.19 Total: -16.83 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.28 Total: -34.05 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.92 -9.45 -42.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.398 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds