Wall clock time and date at job start Tue Mar 31 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.49737 * 2 1 4 4 C 1.53194 * 109.50044 * 120.05997 * 2 1 3 5 5 N 1.46926 * 108.77794 * 174.58391 * 4 2 1 6 6 C 1.34777 * 120.62694 * 126.36805 * 5 4 2 7 7 O 1.21278 * 119.99854 * 179.97438 * 6 5 4 8 8 C 1.50703 * 120.00161 * 0.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47060 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00113 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99923 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47375 * 89.99678 * 16 14 12 18 18 H 1.48508 * 109.47196 * 209.99673 * 16 14 12 19 19 H 1.48504 * 109.47051 * 329.99297 * 16 14 12 20 20 C 1.46924 * 118.74196 * 306.64678 * 5 4 2 21 21 C 1.52765 * 109.00392 * 53.30571 * 20 5 4 22 22 C 1.53003 * 109.56197 * 185.55495 * 21 20 5 23 23 C 1.52995 * 109.38590 * 65.51912 * 21 20 5 24 24 C 1.53034 * 109.38618 * 305.58921 * 21 20 5 25 25 H 1.09001 * 109.47199 * 299.93945 * 1 2 3 26 26 H 1.09001 * 109.47210 * 59.93651 * 1 2 3 27 27 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.58610 * 54.79868 * 4 2 1 29 29 H 1.08997 * 109.70387 * 294.45051 * 4 2 1 30 30 H 1.09001 * 109.46980 * 59.99654 * 8 6 5 31 31 H 1.08992 * 109.47158 * 299.99760 * 8 6 5 32 32 H 1.09002 * 109.47398 * 300.00078 * 9 8 6 33 33 H 1.09001 * 109.47194 * 60.00258 * 9 8 6 34 34 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 35 35 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 36 36 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 37 37 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 38 38 H 0.97008 * 120.00167 * 179.97438 * 15 14 12 39 39 H 1.08991 * 109.58859 * 173.14216 * 20 5 4 40 40 H 1.09000 * 109.58813 * 293.57228 * 20 5 4 41 41 H 1.08994 * 109.47405 * 179.97438 * 22 21 20 42 42 H 1.09005 * 109.47041 * 299.96610 * 22 21 20 43 43 H 1.08998 * 109.47212 * 59.96347 * 22 21 20 44 44 H 1.08999 * 109.47174 * 300.13913 * 23 21 20 45 45 H 1.09001 * 109.47139 * 60.13844 * 23 21 20 46 46 H 1.09001 * 109.47552 * 180.13708 * 23 21 20 47 47 H 1.09007 * 109.45976 * 301.21830 * 24 21 20 48 48 H 1.09002 * 109.46004 * 181.26602 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 1.2498 5 7 3.5046 -0.8287 1.1698 6 6 4.2811 -0.3848 2.1780 7 8 5.4878 -0.4779 2.1002 8 6 3.6499 0.2262 3.4025 9 6 4.7449 0.6433 4.3864 10 6 4.1041 1.2642 5.6293 11 6 5.1989 1.6820 6.6129 12 6 4.5679 2.2941 7.8368 13 1 3.4932 2.3766 7.9064 14 6 5.3622 2.7480 8.8683 15 7 4.8115 3.2826 9.9362 16 14 7.2209 2.6048 8.7484 17 1 7.7720 3.8300 8.1156 18 1 7.7943 2.4498 10.1095 19 1 7.5740 1.4206 7.9248 20 6 4.1056 -1.4216 -0.0327 21 6 3.5708 -0.6954 -1.2657 22 6 4.0797 -1.3902 -2.5303 23 6 4.0551 0.7558 -1.2503 24 6 2.0408 -0.7235 -1.2481 25 1 -0.3634 0.5129 0.8905 26 1 -0.3634 0.5148 -0.8894 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6053 -1.7212 1.2987 29 1 1.7636 -0.1594 2.1403 30 1 2.9950 -0.5047 3.8767 31 1 3.0683 1.1014 3.1132 32 1 5.3262 -0.2321 4.6757 33 1 5.4001 1.3742 3.9124 34 1 3.5231 2.1398 5.3396 35 1 3.4486 0.5339 6.1035 36 1 5.7804 0.8067 6.9026 37 1 5.8541 2.4126 6.1385 38 1 5.3704 3.6016 10.6621 39 1 5.1895 -1.3160 0.0104 40 1 3.8412 -2.4775 -0.0907 41 1 3.6970 -0.8713 -3.4091 42 1 5.1695 -1.3699 -2.5425 43 1 3.7354 -2.4243 -2.5403 44 1 3.6933 1.2500 -0.3487 45 1 5.1449 0.7753 -1.2629 46 1 3.6724 1.2760 -2.1283 47 1 1.6967 -1.7577 -1.2347 48 1 1.6582 -0.2252 -2.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588163629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:14 Heat of formation + Delta-G solvation = -78.582853 kcal Electronic energy + Delta-G solvation = -22738.004057 eV Core-core repulsion = 19598.188244 eV Total energy + Delta-G solvation = -3139.815812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73904 -38.44513 -35.10050 -34.79586 -33.72698 -32.53480 -30.22989 -27.65285 -27.41946 -27.06405 -26.27779 -24.93724 -21.94774 -21.15006 -20.01614 -19.46197 -18.66956 -17.03297 -16.51002 -16.06040 -15.88978 -15.50367 -14.90884 -14.55545 -14.19991 -14.08116 -13.83481 -13.54971 -13.24469 -12.73662 -12.66541 -12.52090 -12.42808 -12.35827 -12.19219 -11.97235 -11.87781 -11.68676 -11.66777 -11.23039 -11.13287 -11.07878 -10.71579 -10.67794 -10.57277 -10.50432 -9.87673 -9.76042 -9.62201 -9.37711 -9.09772 -8.72804 -8.47688 -5.98966 -3.96279 2.68421 2.89141 3.36800 3.43685 3.50114 4.19165 4.33749 4.42132 4.51777 4.51854 4.68047 4.82500 4.93374 5.06975 5.15720 5.20926 5.23979 5.26064 5.30442 5.33479 5.36334 5.38640 5.46086 5.51462 5.55633 5.61121 5.68089 5.70440 5.77145 5.80702 5.86965 5.91249 5.99908 6.05773 6.14292 6.17557 6.36463 6.47231 6.71158 6.84848 7.01691 7.32472 7.40637 7.53387 7.86662 8.21840 8.60135 9.06079 9.64579 11.14567 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028719 B = 0.003050 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.725315 B = 9178.036485 C = 9795.240072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 H 0.080 0.920 4 C 0.111 3.889 5 N -0.617 5.617 6 C 0.515 3.485 7 O -0.538 6.538 8 C -0.138 4.138 9 C -0.106 4.106 10 C -0.102 4.102 11 C -0.015 4.015 12 C -0.519 4.519 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.907 5.907 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.264 1.264 20 C 0.121 3.879 21 C -0.081 4.081 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 -10.033 -26.905 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.098 0.902 4 C -0.013 4.013 5 N -0.351 5.351 6 C 0.305 3.695 7 O -0.414 6.414 8 C -0.178 4.178 9 C -0.144 4.144 10 C -0.140 4.140 11 C -0.053 4.053 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.002 4.002 21 C -0.082 4.082 22 C -0.197 4.197 23 C -0.197 4.197 24 C -0.139 4.139 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.600 -10.011 -26.748 29.554 hybrid contribution 0.811 0.007 0.017 0.811 sum -6.789 -10.004 -26.731 29.338 Atomic orbital electron populations 1.21773 0.94281 1.02066 1.02240 1.21586 0.95917 1.00616 0.94950 0.90179 1.21831 0.79626 1.00933 0.98867 1.48133 1.06702 1.61988 1.18238 1.21057 0.87126 0.77135 0.84219 1.90681 1.14526 1.55960 1.80210 1.21798 1.00721 1.01476 0.93781 1.21488 0.96453 1.01275 0.95178 1.21470 0.99152 0.99233 0.94108 1.19574 0.94777 0.96137 0.94788 1.21189 0.95253 1.38952 1.00285 0.91115 1.25039 0.98690 0.94686 0.95199 1.69923 1.35573 1.41604 1.07490 0.86776 0.86143 0.79204 0.77192 1.20320 1.21467 1.18885 1.21527 0.99737 0.95853 0.83086 1.20848 0.95663 0.96527 0.95121 1.21798 1.01322 1.00170 0.96383 1.21870 1.01170 0.94894 1.01749 1.21643 0.94076 1.00642 0.97581 0.92156 0.92347 0.92505 0.91411 0.89204 0.89103 0.89128 0.91820 0.91857 0.92916 0.92871 0.96626 0.97075 0.92833 0.89029 0.91937 0.92312 0.92328 0.92531 0.92234 0.92628 0.92799 0.91801 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.11 -0.76 2.53 -90.50 -0.23 -0.99 16 3 H 0.08 0.63 6.34 -51.93 -0.33 0.30 16 4 C 0.11 0.88 5.63 -3.71 -0.02 0.86 16 5 N -0.62 -6.62 2.42 -173.03 -0.42 -7.04 16 6 C 0.52 7.27 7.70 -10.98 -0.08 7.18 16 7 O -0.54 -9.69 15.40 5.56 0.09 -9.60 16 8 C -0.14 -1.83 4.05 -27.88 -0.11 -1.94 16 9 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 10 C -0.10 -2.04 5.15 -26.74 -0.14 -2.18 16 11 C -0.02 -0.38 4.04 -27.89 -0.11 -0.50 16 12 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 13 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 14 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 16 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 20 C 0.12 1.18 5.07 -3.93 -0.02 1.16 16 21 C -0.08 -0.62 0.77 -154.61 -0.12 -0.74 16 22 C -0.14 -0.89 8.48 37.16 0.32 -0.58 16 23 C -0.14 -1.24 7.98 37.15 0.30 -0.94 16 24 C -0.10 -0.66 3.99 -26.69 -0.11 -0.77 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 30 H 0.09 1.05 7.94 -51.93 -0.41 0.64 16 31 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 32 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.60 5.98 -51.93 -0.31 0.29 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -33.40 366.36 -8.48 -41.88 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -9.24 Total: -5.28 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.54 Total: -15.56 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.35 Total: -34.85 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.40 -8.48 -41.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.703 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds