Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.49939 * 2 1 4 4 C 1.53192 * 109.52574 * 239.91119 * 2 1 3 5 5 N 1.46921 * 108.77565 * 185.39910 * 4 2 1 6 6 C 1.34775 * 120.63131 * 233.58669 * 5 4 2 7 7 O 1.21284 * 120.00403 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99931 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47201 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47332 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47332 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47233 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99447 * 0.02562 * 12 11 10 14 14 C 1.37868 * 119.99889 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00296 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99976 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47315 * 89.99654 * 16 14 12 18 18 H 1.48498 * 109.47207 * 210.00018 * 16 14 12 19 19 H 1.48499 * 109.46942 * 329.99731 * 16 14 12 20 20 C 1.46928 * 118.73936 * 53.61149 * 5 4 2 21 21 C 1.53187 * 108.77625 * 306.39044 * 20 5 4 22 22 C 1.53004 * 109.49685 * 294.68576 * 21 20 5 23 23 C 1.52996 * 109.49748 * 174.58551 * 21 20 5 24 24 C 1.53046 * 109.31363 * 54.63376 * 21 20 5 25 25 H 1.09000 * 109.47368 * 299.93873 * 1 2 3 26 26 H 1.09002 * 109.46798 * 59.93859 * 1 2 3 27 27 H 1.09003 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.58717 * 305.18972 * 4 2 1 29 29 H 1.09008 * 109.58305 * 65.61481 * 4 2 1 30 30 H 1.09001 * 109.47442 * 299.99681 * 8 6 5 31 31 H 1.09001 * 109.47365 * 60.00272 * 8 6 5 32 32 H 1.08998 * 109.47386 * 299.99979 * 9 8 6 33 33 H 1.09002 * 109.47002 * 60.00372 * 9 8 6 34 34 H 1.08998 * 109.46993 * 300.00373 * 10 9 8 35 35 H 1.09002 * 109.46648 * 60.00309 * 10 9 8 36 36 H 1.09001 * 109.47115 * 300.00589 * 11 10 9 37 37 H 1.09006 * 109.46713 * 60.00101 * 11 10 9 38 38 H 0.97001 * 120.00087 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.58351 * 66.18158 * 20 5 4 40 40 H 1.09002 * 109.58642 * 186.45815 * 20 5 4 41 41 H 1.09004 * 109.46752 * 179.84129 * 22 21 20 42 42 H 1.08997 * 109.46709 * 299.83069 * 22 21 20 43 43 H 1.08999 * 109.47314 * 59.83807 * 22 21 20 44 44 H 1.09004 * 109.47265 * 300.15748 * 23 21 20 45 45 H 1.08997 * 109.47194 * 60.16732 * 23 21 20 46 46 H 1.09000 * 109.47205 * 180.16287 * 23 21 20 47 47 H 1.08993 * 109.46296 * 178.61734 * 24 21 20 48 48 H 1.09000 * 109.45696 * 58.65290 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0420 -0.7238 -1.2493 5 7 3.5053 -0.8285 -1.1688 6 6 4.2819 -0.3856 -2.1773 7 8 5.4887 -0.4772 -2.0987 8 6 3.6508 0.2244 -3.4023 9 6 4.7458 0.6416 -4.3861 10 6 4.1051 1.2604 -5.6301 11 6 5.2001 1.6782 -6.6136 12 6 4.5690 2.2871 -7.8392 13 1 3.4944 2.3684 -7.9093 14 6 5.3635 2.7404 -8.8707 15 7 6.6721 2.6419 -8.7851 16 14 4.5812 3.4959 -10.3895 17 1 4.4308 4.9600 -10.1927 18 1 5.4453 3.2413 -11.5701 19 1 3.2455 2.8867 -10.6133 20 6 4.1059 -1.4256 0.0319 21 6 3.5708 -0.6940 1.2668 22 6 4.0545 0.7575 1.2499 23 6 4.0797 -1.3879 2.5318 24 6 2.0407 -0.7227 1.2487 25 1 -0.3634 0.5129 0.8905 26 1 -0.3633 0.5148 -0.8895 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6064 -1.7218 -1.2976 29 1 1.7645 -0.1582 -2.1388 30 1 2.9957 -0.5067 -3.8760 31 1 3.0694 1.1001 -3.1137 32 1 5.4006 1.3730 -3.9123 33 1 5.3276 -0.2338 -4.6749 34 1 3.4506 0.5288 -6.1038 35 1 3.5231 2.1358 -5.3417 36 1 5.8543 2.4100 -6.1396 37 1 5.7826 0.8031 -6.9020 38 1 7.2311 2.9605 -9.5110 39 1 3.8386 -2.4808 0.0879 40 1 5.1904 -1.3253 -0.0136 41 1 3.6712 1.2784 2.1273 42 1 5.1442 0.7774 1.2629 43 1 3.6927 1.2506 0.3476 44 1 3.7357 -2.4222 2.5423 45 1 5.1694 -1.3671 2.5443 46 1 3.6963 -0.8687 3.4102 47 1 1.6576 -0.2241 2.1390 48 1 1.6971 -1.7570 1.2357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588163630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = -81.830353 kcal Electronic energy + Delta-G solvation = -22681.353044 eV Core-core repulsion = 19541.396410 eV Total energy + Delta-G solvation = -3139.956635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67820 -38.37921 -34.98741 -34.71182 -33.68373 -32.56733 -29.85114 -27.61183 -27.26116 -27.03557 -26.13011 -24.82611 -22.16228 -21.11931 -20.00677 -19.41475 -18.63396 -16.91302 -16.17519 -15.95516 -15.82201 -15.45937 -14.85797 -14.47648 -14.43532 -14.00849 -13.79578 -13.46131 -13.18986 -12.69064 -12.65213 -12.48885 -12.30488 -12.22903 -12.08540 -11.86779 -11.74242 -11.58404 -11.46902 -11.19386 -11.08308 -10.96058 -10.65549 -10.55699 -10.50217 -10.47728 -10.35538 -9.67263 -9.58047 -9.18733 -8.95308 -8.67692 -8.28365 -5.93106 -3.95606 2.74953 2.94427 3.35335 3.41271 3.44506 4.22420 4.37273 4.45208 4.50518 4.55050 4.74398 4.85649 4.96626 5.10316 5.19043 5.24213 5.28508 5.30439 5.37305 5.39927 5.41714 5.42415 5.49587 5.54295 5.60340 5.64612 5.71124 5.73852 5.79143 5.88101 5.90699 5.94268 6.03853 6.17281 6.18211 6.32515 6.44212 6.59507 6.87635 7.05231 7.22921 7.38608 7.76630 7.93049 8.08611 8.28502 8.50354 9.12194 9.67936 11.18260 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.002873 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.971737 B = 9744.131327 C =10321.958571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 H 0.080 0.920 4 C 0.111 3.889 5 N -0.618 5.618 6 C 0.515 3.485 7 O -0.536 6.536 8 C -0.138 4.138 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.121 3.879 21 C -0.080 4.080 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.102 4.102 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 -8.430 24.009 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 H 0.098 0.902 4 C -0.012 4.012 5 N -0.352 5.352 6 C 0.304 3.696 7 O -0.412 6.412 8 C -0.177 4.177 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.002 4.002 21 C -0.081 4.081 22 C -0.197 4.197 23 C -0.197 4.197 24 C -0.139 4.139 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.644 -8.447 23.926 27.918 hybrid contribution -0.476 0.423 -0.813 1.033 sum -12.120 -8.024 23.113 27.303 Atomic orbital electron populations 1.21772 0.94336 1.02037 1.02190 1.21592 0.95857 1.00642 0.95002 0.90180 1.21817 0.79709 1.00850 0.98826 1.48142 1.06662 1.62026 1.18345 1.21081 0.87151 0.77143 0.84203 1.90689 1.14499 1.55805 1.80163 1.21816 1.00815 1.01299 0.93816 1.21458 0.96282 1.01312 0.95064 1.21646 0.99731 0.98669 0.94686 1.19095 0.93332 0.96454 0.92838 1.21286 0.92977 1.39438 1.02101 0.92769 1.25041 0.94833 0.96168 0.98544 1.69978 1.03380 1.47333 1.32803 0.86614 0.79192 0.79546 0.82755 1.20717 1.21260 1.19926 1.21613 0.99781 0.95728 0.83092 1.20923 0.95604 0.96510 0.95096 1.21862 1.01213 0.94858 1.01719 1.21798 1.01345 1.00155 0.96382 1.21643 0.94124 1.00611 0.97544 0.92376 0.92193 0.92521 0.91457 0.89248 0.89272 0.89297 0.91853 0.91838 0.93511 0.93539 0.96611 0.96596 0.93057 0.91967 0.88999 0.92828 0.92597 0.92224 0.92551 0.92308 0.92348 0.91691 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.20 37.16 0.34 -0.49 16 2 C -0.11 -0.79 2.53 -90.50 -0.23 -1.02 16 3 H 0.08 0.65 6.34 -51.93 -0.33 0.32 16 4 C 0.11 0.92 5.63 -3.71 -0.02 0.90 16 5 N -0.62 -6.93 2.41 -172.77 -0.42 -7.35 16 6 C 0.51 7.61 7.70 -10.99 -0.08 7.52 16 7 O -0.54 -10.09 15.39 5.55 0.09 -10.00 16 8 C -0.14 -1.93 4.05 -27.88 -0.11 -2.04 16 9 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 16 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.12 1.23 5.11 -3.71 -0.02 1.22 16 21 C -0.08 -0.65 0.77 -154.39 -0.12 -0.77 16 22 C -0.14 -1.28 7.99 37.16 0.30 -0.99 16 23 C -0.14 -0.93 8.48 37.16 0.32 -0.62 16 24 C -0.10 -0.69 3.99 -26.68 -0.11 -0.80 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.70 5.93 -51.92 -0.31 0.40 16 30 H 0.09 1.09 7.94 -51.93 -0.41 0.68 16 31 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 32 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.63 5.97 -51.93 -0.31 0.32 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -33.16 369.99 -8.86 -42.01 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -9.27 Total: -5.15 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.55 Total: -15.08 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.32 Total: -34.40 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.16 -8.86 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.818 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds