Wall clock time and date at job start Tue Mar 31 2020 05:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46796 * 2 1 4 4 C 1.53002 * 109.47428 * 240.00226 * 2 1 3 5 5 C 1.53000 * 109.47586 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.46717 * 59.99968 * 5 4 2 7 7 H 1.09002 * 109.47353 * 60.00243 * 6 5 4 8 8 N 1.46504 * 109.47049 * 179.97438 * 6 5 4 9 9 C 1.34774 * 120.00240 * 275.00181 * 8 6 5 10 10 O 1.21283 * 119.99643 * 359.97438 * 9 8 6 11 11 C 1.50694 * 119.99993 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.47168 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47355 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47355 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.52998 * 109.47713 * 300.00086 * 6 5 4 24 24 C 1.52998 * 109.47573 * 120.00216 * 2 1 3 25 25 H 1.09003 * 109.47032 * 299.99939 * 24 2 1 26 26 C 1.52997 * 109.47165 * 59.99919 * 24 2 1 27 27 H 1.09002 * 109.46796 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46788 * 299.99551 * 1 2 3 29 29 H 1.09000 * 109.47480 * 59.99900 * 1 2 3 30 30 H 1.09000 * 109.46894 * 59.99515 * 4 2 1 31 31 H 1.09003 * 109.47222 * 300.00410 * 4 2 1 32 32 H 1.09002 * 109.47010 * 300.00002 * 5 4 2 33 33 H 1.08994 * 109.46947 * 180.02562 * 5 4 2 34 34 H 0.97005 * 119.99919 * 94.99964 * 8 6 5 35 35 H 1.08994 * 109.47211 * 59.99931 * 11 9 8 36 36 H 1.09003 * 109.47615 * 299.99937 * 11 9 8 37 37 H 1.09002 * 109.46926 * 60.00175 * 12 11 9 38 38 H 1.08992 * 109.47494 * 300.00169 * 12 11 9 39 39 H 1.09002 * 109.46807 * 60.00291 * 13 12 11 40 40 H 1.08998 * 109.47285 * 299.99893 * 13 12 11 41 41 H 1.09007 * 109.46922 * 59.99890 * 14 13 12 42 42 H 1.09003 * 109.46836 * 300.00646 * 14 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47488 * 180.02562 * 23 6 5 45 45 H 1.09002 * 109.46840 * 300.00472 * 23 6 5 46 46 H 1.09003 * 109.47129 * 60.00080 * 26 24 2 47 47 H 1.08996 * 109.47549 * 180.02562 * 26 24 2 48 48 H 1.09007 * 109.47133 * 300.00597 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5701 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 3.7175 -2.4694 -0.0002 8 7 5.5455 -1.4416 -0.0010 9 6 6.2192 -2.3979 -0.6705 10 8 5.6124 -3.2587 -1.2721 11 6 7.7261 -2.3976 -0.6716 12 6 8.2358 -3.5798 -1.4982 13 6 9.7658 -3.5792 -1.4998 14 6 10.2755 -4.7618 -2.3260 15 6 11.7824 -4.7615 -2.3270 16 1 12.3227 -3.9948 -1.7916 17 6 12.4716 -5.7401 -3.0115 18 7 11.8137 -6.6741 -3.6631 19 14 14.3396 -5.7393 -3.0134 20 1 14.8343 -6.8873 -3.8151 21 1 14.8334 -4.4709 -3.6070 22 1 14.8360 -5.8595 -1.6190 23 6 3.5706 -0.7205 1.2489 24 6 2.0401 -0.7213 1.2492 25 1 1.6768 -0.2075 2.1392 26 6 1.5302 -2.1638 1.2492 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6767 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2494 32 1 3.9330 0.3072 -1.2498 33 1 3.9333 -1.2340 -2.1398 34 1 6.0308 -0.7534 0.4805 35 1 8.0902 -2.4866 0.3519 36 1 8.0890 -1.4663 -1.1065 37 1 7.8717 -3.4912 -2.5218 38 1 7.8730 -4.5109 -1.0629 39 1 10.1302 -3.6676 -0.4763 40 1 10.1283 -2.6481 -1.9355 41 1 9.9110 -4.6739 -3.3495 42 1 9.9129 -5.6927 -1.8899 43 1 12.2986 -7.3624 -4.1449 44 1 3.9346 -1.2338 2.1388 45 1 3.9335 0.3074 1.2487 46 1 1.8935 -2.6776 0.3591 47 1 1.8932 -2.6775 2.1393 48 1 0.4401 -2.1638 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:46 Heat of formation + Delta-G solvation = -94.980088 kcal Electronic energy + Delta-G solvation = -22016.015341 eV Core-core repulsion = 18875.488491 eV Total energy + Delta-G solvation = -3140.526850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42001 -38.92312 -35.14972 -34.64521 -32.61865 -32.06552 -31.46915 -29.56202 -27.73029 -26.12185 -25.09147 -22.74567 -22.49995 -21.31919 -20.27194 -19.92861 -18.75219 -16.91662 -16.57576 -16.09537 -15.70117 -15.37624 -14.73332 -14.44061 -14.35804 -14.18896 -14.05854 -13.51508 -13.34341 -12.89932 -12.73598 -12.54121 -12.27867 -12.17881 -11.92729 -11.67138 -11.63523 -11.57056 -11.39560 -11.07149 -10.94332 -10.84546 -10.53210 -10.51032 -10.48751 -10.37149 -10.24330 -9.70275 -9.57620 -9.18086 -9.06243 -8.95667 -8.27851 -5.92756 -3.95224 2.79613 3.16912 3.36899 3.41112 3.43470 4.27815 4.32002 4.46022 4.51051 4.72613 4.82461 4.95464 4.99923 5.01396 5.11419 5.16576 5.26323 5.31776 5.36846 5.41452 5.42395 5.43272 5.50820 5.58767 5.63158 5.66483 5.70923 5.84272 5.88558 5.93316 5.96678 6.00451 6.08592 6.18217 6.24750 6.35062 6.46796 6.59642 6.88120 7.06206 7.23552 7.52403 7.76609 7.93265 8.08880 8.34873 8.50645 9.12308 9.68079 11.18526 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.052062 B = 0.002256 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.694290 B =12406.330095 C =12511.172412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.130 4.130 6 C 0.143 3.857 7 H 0.090 0.910 8 N -0.736 5.736 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.139 4.139 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.288 1.288 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.122 4.122 24 C -0.081 4.081 25 H 0.072 0.928 26 C -0.157 4.157 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.568 16.548 11.181 30.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.168 4.168 6 C 0.038 3.962 7 H 0.108 0.892 8 N -0.388 5.388 9 C 0.300 3.700 10 O -0.411 6.411 11 C -0.179 4.179 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.213 1.213 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.160 4.160 24 C -0.100 4.100 25 H 0.090 0.910 26 C -0.214 4.214 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.974 15.738 10.625 29.806 hybrid contribution 1.319 0.354 0.194 1.379 sum -21.655 16.092 10.819 29.068 Atomic orbital electron populations 1.21889 0.95263 1.02059 1.01482 1.21178 0.95494 0.99313 0.94717 0.91264 1.21600 0.94973 1.01208 0.97382 1.21919 0.95607 1.00664 0.98629 1.20982 0.79764 1.00980 0.94468 0.89218 1.46202 1.06831 1.31207 1.54598 1.21087 0.90852 0.80420 0.77685 1.90697 1.70574 1.37136 1.42740 1.21796 0.90366 1.02544 1.03229 1.21440 0.97201 0.95940 0.99497 1.21650 0.91932 1.00804 1.00409 1.19094 0.95355 0.92378 0.94896 1.21250 0.92019 1.11272 1.31328 0.92819 1.25052 0.98343 0.95654 0.95582 1.69968 1.35403 1.14827 1.33274 0.86665 0.85942 0.77417 0.77987 1.21333 1.20297 1.20302 1.21845 0.95867 1.00764 0.97493 1.21065 0.94123 0.96789 0.97999 0.90955 1.22039 1.01138 0.95928 1.02337 0.92250 0.92830 0.92791 0.91847 0.91356 0.91998 0.91287 0.76885 0.89251 0.89246 0.91863 0.91849 0.93516 0.93514 0.96606 0.96606 0.93004 0.91281 0.91487 0.91778 0.92743 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.84 37.16 0.33 -0.53 16 2 C -0.09 -0.57 2.49 -90.62 -0.23 -0.80 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.89 4.93 -26.73 -0.13 -1.02 16 5 C -0.13 -1.22 5.49 -26.73 -0.15 -1.37 16 6 C 0.14 1.37 2.18 -67.93 -0.15 1.22 16 7 H 0.09 1.07 5.86 -51.93 -0.30 0.76 16 8 N -0.74 -7.51 5.08 -53.81 -0.27 -7.78 16 9 C 0.51 7.24 7.79 -10.99 -0.09 7.15 16 10 O -0.54 -9.87 15.64 5.56 0.09 -9.78 16 11 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16 12 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 13 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.53 4.97 -27.89 -0.14 0.40 16 15 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.12 -0.85 4.92 -26.71 -0.13 -0.98 16 24 C -0.08 -0.52 2.72 -90.60 -0.25 -0.77 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 C -0.16 -1.11 8.15 37.16 0.30 -0.80 16 27 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.40 2.91 8.60 -40.82 -0.35 2.56 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -33.28 368.38 -9.43 -42.70 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -9.05 Total: -2.74 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.45 Total: -17.98 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.46 Total: -34.84 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.28 -9.43 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.279 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds