Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47038 * 239.99939 * 2 1 3 5 5 C 1.52999 * 109.47038 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47156 * 60.00078 * 5 4 2 7 7 H 1.08995 * 109.47098 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47257 * 59.99882 * 6 5 4 9 9 C 1.34777 * 119.99828 * 84.72116 * 8 6 5 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 6 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 6 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99434 * 19 17 15 21 21 H 1.48501 * 109.47293 * 209.99885 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99683 * 19 17 15 23 23 C 1.53004 * 109.47083 * 299.99894 * 6 5 4 24 24 C 1.52999 * 109.47156 * 120.00018 * 2 1 3 25 25 H 1.09003 * 109.47054 * 60.00168 * 24 2 1 26 26 C 1.52997 * 109.47278 * 300.00085 * 24 2 1 27 27 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47008 * 299.99881 * 1 2 3 29 29 H 1.08996 * 109.47113 * 59.99926 * 1 2 3 30 30 H 1.08998 * 109.46617 * 60.00369 * 4 2 1 31 31 H 1.08994 * 109.47168 * 300.00088 * 4 2 1 32 32 H 1.09003 * 109.47002 * 300.00215 * 5 4 2 33 33 H 1.08996 * 109.47008 * 180.02562 * 5 4 2 34 34 H 0.97001 * 120.00384 * 265.00562 * 8 6 5 35 35 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 36 36 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 37 37 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 38 38 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 39 39 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 40 40 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 41 41 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 42 42 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 43 43 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.46617 * 179.97438 * 23 6 5 45 45 H 1.08994 * 109.47168 * 299.99945 * 23 6 5 46 46 H 1.08995 * 109.47275 * 59.99840 * 26 24 2 47 47 H 1.08996 * 109.47253 * 179.97438 * 26 24 2 48 48 H 1.09003 * 109.47146 * 300.00027 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4435 0.0003 7 1 5.1694 -1.4443 0.0003 8 7 3.5906 -2.8245 0.0000 9 6 4.2642 -3.7776 -0.6741 10 8 5.2777 -3.4930 -1.2763 11 6 3.7580 -5.1970 -0.6796 12 6 4.6991 -6.0709 -1.5110 13 6 4.1855 -7.5121 -1.5161 14 6 5.1270 -8.3862 -2.3469 15 6 4.6208 -9.8057 -2.3524 16 1 3.7180 -10.0590 -1.8165 17 6 5.3106 -10.7810 -3.0407 18 7 6.4102 -10.4725 -3.6929 19 14 4.6828 -12.5403 -3.0481 20 1 3.7607 -12.7320 -4.1962 21 1 5.8301 -13.4748 -3.1732 22 1 3.9584 -12.8126 -1.7807 23 6 3.5695 -0.7222 1.2496 24 6 2.0400 -0.7212 1.2492 25 1 1.6767 -1.7489 1.2492 26 6 1.5300 -0.0001 2.4985 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6767 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9337 0.3057 -1.2487 33 1 3.9333 -1.2353 -2.1391 34 1 2.7800 -3.0522 0.4816 35 1 3.7212 -5.5736 0.3426 36 1 2.7582 -5.2245 -1.1131 37 1 4.7363 -5.6945 -2.5332 38 1 5.6987 -6.0434 -1.0771 39 1 4.1486 -7.8883 -0.4937 40 1 3.1859 -7.5401 -1.9497 41 1 5.1643 -8.0102 -3.3693 42 1 6.1265 -8.3583 -1.9128 43 1 6.8954 -11.1586 -4.1775 44 1 3.9321 -1.2366 2.1395 45 1 3.9332 0.3053 1.2498 46 1 0.4401 0.0000 2.4985 47 1 1.8930 -0.5141 3.3884 48 1 1.8933 1.0276 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = -95.902237 kcal Electronic energy + Delta-G solvation = -22225.527320 eV Core-core repulsion = 19084.960482 eV Total energy + Delta-G solvation = -3140.566837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49413 -38.69206 -35.04689 -34.56191 -32.66990 -32.50840 -31.49009 -29.51029 -27.57399 -26.01432 -25.34312 -22.63459 -22.19537 -21.09511 -20.58674 -19.91958 -19.24245 -16.91715 -16.23088 -15.96766 -15.78465 -15.27732 -14.83348 -14.51327 -14.44112 -14.32778 -13.86691 -13.65447 -13.27403 -12.81065 -12.54026 -12.39745 -12.20546 -12.14899 -12.08316 -11.86873 -11.70600 -11.63961 -11.51025 -11.28638 -10.95831 -10.79359 -10.50340 -10.47726 -10.41044 -10.37066 -10.23026 -9.71923 -9.57686 -9.18258 -9.04920 -8.94818 -8.28199 -5.92943 -3.95404 2.81255 3.21831 3.35497 3.41405 3.44701 4.28333 4.32708 4.34724 4.50850 4.65439 4.83495 4.90173 5.03717 5.08747 5.12688 5.20206 5.22102 5.32483 5.36290 5.38356 5.41649 5.43511 5.44822 5.54790 5.63366 5.67363 5.71982 5.76306 5.88000 5.90632 5.99279 6.02053 6.07024 6.16434 6.18505 6.35376 6.48896 6.60130 6.88334 7.06468 7.23715 7.53745 7.76863 7.93331 8.08830 8.36407 8.50622 9.12405 9.68106 11.18435 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.002498 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.986760 B =11207.490864 C =11439.214129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.145 3.855 7 H 0.086 0.914 8 N -0.731 5.731 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.140 4.140 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.122 4.122 24 C -0.088 4.088 25 H 0.069 0.931 26 C -0.149 4.149 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 24.798 11.685 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.170 4.170 6 C 0.040 3.960 7 H 0.104 0.896 8 N -0.385 5.385 9 C 0.299 3.701 10 O -0.412 6.412 11 C -0.180 4.180 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.160 4.160 24 C -0.106 4.106 25 H 0.087 0.913 26 C -0.207 4.207 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.907 24.925 11.142 29.400 hybrid contribution -0.702 -1.091 0.149 1.306 sum -11.609 23.834 11.291 28.815 Atomic orbital electron populations 1.21897 0.95314 1.01910 1.01611 1.21180 0.95415 0.99509 0.94396 0.91247 1.21560 0.95393 1.00847 0.97271 1.21919 0.95865 1.00516 0.98684 1.20873 0.99462 0.81084 0.94532 0.89590 1.46223 1.29598 1.08359 1.54305 1.21077 0.83607 0.87665 0.77734 1.90696 1.24791 1.82895 1.42855 1.21792 1.01774 0.91202 1.03181 1.21436 0.98081 0.95088 0.99455 1.21647 0.99903 0.92826 1.00403 1.19097 0.94369 0.93409 0.94868 1.21288 1.09618 0.93774 1.31112 0.92776 1.25043 0.95015 0.98944 0.95603 1.69975 1.16785 1.33514 1.33229 0.86612 0.78345 0.84802 0.78330 1.20716 1.21262 1.19932 1.21880 0.95529 1.01142 0.97406 1.21151 0.94948 0.99672 0.94872 0.91310 1.21888 1.01234 1.00423 0.97112 0.92669 0.92449 0.92825 0.92063 0.91792 0.91352 0.91223 0.76827 0.89300 0.89317 0.91863 0.91854 0.93524 0.93533 0.96610 0.96595 0.93059 0.91243 0.90550 0.92285 0.92710 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.84 37.16 0.33 -0.54 16 2 C -0.09 -0.54 2.25 -90.62 -0.20 -0.75 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.88 5.05 -26.73 -0.13 -1.02 16 5 C -0.13 -1.20 5.60 -26.73 -0.15 -1.35 16 6 C 0.15 1.36 2.78 -67.93 -0.19 1.17 16 7 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 8 N -0.73 -7.35 4.23 -53.81 -0.23 -7.58 16 9 C 0.51 7.18 7.79 -10.98 -0.09 7.09 16 10 O -0.54 -9.83 15.65 5.55 0.09 -9.74 16 11 C -0.14 -1.90 5.70 -27.89 -0.16 -2.05 16 12 C -0.10 -1.88 4.50 -26.74 -0.12 -2.00 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.82 13.29 55.43 0.74 -27.08 16 19 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 23 C -0.12 -0.82 4.89 -26.76 -0.13 -0.95 16 24 C -0.09 -0.52 2.07 -90.65 -0.19 -0.71 16 25 H 0.07 0.42 6.50 -51.93 -0.34 0.08 16 26 C -0.15 -0.78 8.84 37.16 0.33 -0.45 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.40 3.06 6.87 -40.82 -0.28 2.78 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.29 6.43 -51.93 -0.33 -0.04 16 47 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -33.13 370.96 -9.45 -42.58 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -9.22 Total: -3.27 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.39 Total: -17.57 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.51 Total: -34.66 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.13 -9.45 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.322 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds