Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47225 * 2 1 4 4 C 1.53005 * 109.46976 * 240.00358 * 2 1 3 5 5 C 1.52996 * 109.46976 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47301 * 60.00330 * 5 4 2 7 7 H 1.08999 * 109.47119 * 59.99648 * 6 5 4 8 8 N 1.46496 * 109.47085 * 180.02562 * 6 5 4 9 9 C 1.34777 * 119.99614 * 274.99223 * 8 6 5 10 10 O 1.21283 * 120.00391 * 0.02562 * 9 8 6 11 11 C 1.50706 * 120.00110 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.47348 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.46929 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.53005 * 109.46836 * 299.99755 * 6 5 4 24 24 C 1.52996 * 109.46976 * 60.00045 * 23 6 5 25 25 H 1.08999 * 109.47321 * 59.99898 * 24 23 6 26 26 C 1.53001 * 109.47028 * 180.02562 * 24 23 6 27 27 H 1.08999 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47069 * 299.99601 * 1 2 3 29 29 H 1.09005 * 109.47036 * 59.99260 * 1 2 3 30 30 H 1.09005 * 109.46926 * 60.00315 * 4 2 1 31 31 H 1.08999 * 109.47179 * 300.00189 * 4 2 1 32 32 H 1.09004 * 109.47225 * 299.99642 * 5 4 2 33 33 H 1.09006 * 109.46918 * 179.97438 * 5 4 2 34 34 H 0.96996 * 120.00499 * 94.99801 * 8 6 5 35 35 H 1.09004 * 109.47058 * 59.99967 * 11 9 8 36 36 H 1.09006 * 109.46863 * 300.00634 * 11 9 8 37 37 H 1.09000 * 109.46986 * 59.99910 * 12 11 9 38 38 H 1.09002 * 109.46857 * 299.99776 * 12 11 9 39 39 H 1.09000 * 109.47441 * 60.00090 * 13 12 11 40 40 H 1.09002 * 109.47087 * 299.99536 * 13 12 11 41 41 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 42 42 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 43 43 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 44 44 H 1.08996 * 109.46872 * 179.97438 * 23 6 5 45 45 H 1.09004 * 109.46852 * 300.00174 * 23 6 5 46 46 H 1.09002 * 109.47311 * 179.97438 * 26 24 23 47 47 H 1.09005 * 109.47071 * 299.99781 * 26 24 23 48 48 H 1.08999 * 109.47446 * 59.99616 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7206 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 1 3.7175 -2.4694 -0.0004 8 7 5.5454 -1.4406 -0.0006 9 6 6.2199 -2.3962 -0.6701 10 8 5.6141 -3.2568 -1.2729 11 6 7.7270 -2.3955 -0.6697 12 6 8.2378 -3.5764 -1.4977 13 6 9.7677 -3.5759 -1.4968 14 6 10.2785 -4.7571 -2.3243 15 6 11.7856 -4.7564 -2.3239 16 1 12.3251 -3.9899 -1.7875 17 6 12.4756 -5.7343 -3.0084 18 7 11.8186 -6.6675 -3.6620 19 14 14.3436 -5.7330 -3.0085 20 1 14.8380 -4.9302 -4.1557 21 1 14.8382 -5.1404 -1.7398 22 1 14.8395 -7.1275 -3.1299 23 6 3.5705 -0.7205 1.2488 24 6 2.0405 -0.7210 1.2491 25 1 1.6775 -1.7488 1.2493 26 6 1.5306 0.0007 2.4981 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.6766 -0.2072 -2.1393 31 1 1.6766 -1.7488 -1.2494 32 1 3.9329 0.3072 -1.2499 33 1 3.9332 -1.2349 -2.1395 34 1 6.0300 -0.7522 0.4813 35 1 8.0901 -2.4851 0.3541 36 1 8.0900 -1.4638 -1.1037 37 1 7.8746 -3.4863 -2.5215 38 1 7.8748 -4.5082 -1.0641 39 1 10.1305 -3.6662 -0.4729 40 1 10.1311 -2.6441 -1.9302 41 1 9.9159 -4.6674 -3.3483 42 1 9.9152 -5.6888 -1.8905 43 1 10.8486 -6.6680 -3.6623 44 1 3.9338 -1.2344 2.1387 45 1 3.9335 0.3074 1.2486 46 1 0.4405 0.0007 2.4982 47 1 1.8943 -0.5126 3.3883 48 1 1.8935 1.0285 2.4976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -103.533223 kcal Electronic energy + Delta-G solvation = -21859.985021 eV Core-core repulsion = 18719.087280 eV Total energy + Delta-G solvation = -3140.897742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30353 -38.86459 -35.31474 -34.80432 -32.85439 -32.58043 -31.50212 -29.41938 -27.52637 -25.90939 -24.84087 -22.53763 -22.32261 -21.10006 -20.55016 -20.17370 -19.75860 -16.95496 -16.58919 -16.20830 -15.70773 -15.17002 -14.89218 -14.72540 -14.44896 -13.92939 -13.84088 -13.66321 -13.21162 -13.02480 -12.72680 -12.47455 -12.30736 -12.28947 -12.23008 -12.12274 -11.82810 -11.31766 -11.24016 -11.10116 -10.94316 -10.91311 -10.63137 -10.59605 -10.54764 -10.40566 -10.08151 -9.82969 -9.71810 -9.46859 -9.12002 -8.44011 -8.25006 -6.28725 -3.97164 2.73377 3.10553 3.46808 3.51012 3.66683 4.23754 4.29123 4.44089 4.60125 4.61118 4.75709 4.85506 4.99664 5.05565 5.12327 5.17422 5.19402 5.20690 5.29789 5.33986 5.39553 5.40803 5.48591 5.49567 5.61011 5.61814 5.64805 5.77994 5.82808 5.88537 5.92457 5.97900 6.02228 6.07348 6.15926 6.23388 6.40076 6.48331 6.74560 6.91495 7.07270 7.46589 7.52544 7.65405 8.28383 8.31249 8.54871 8.96808 9.75589 11.12073 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.052199 B = 0.002211 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.282998 B =12660.256114 C =12920.105340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.145 3.855 7 H 0.086 0.914 8 N -0.736 5.736 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.139 4.139 12 C -0.104 4.104 13 C -0.103 4.103 14 C 0.006 3.994 15 C -0.601 4.601 16 H 0.048 0.952 17 C 0.011 3.989 18 N -0.915 5.915 19 Si 1.072 2.928 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.285 1.285 23 C -0.121 4.121 24 C -0.083 4.083 25 H 0.073 0.927 26 C -0.149 4.149 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.269 0.731 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.611 17.709 11.927 31.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.168 4.168 6 C 0.040 3.960 7 H 0.104 0.896 8 N -0.387 5.387 9 C 0.300 3.700 10 O -0.412 6.412 11 C -0.179 4.179 12 C -0.142 4.142 13 C -0.141 4.141 14 C -0.031 4.031 15 C -0.639 4.639 16 H 0.066 0.934 17 C -0.192 4.192 18 N -0.552 5.552 19 Si 0.901 3.099 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.210 1.210 23 C -0.159 4.159 24 C -0.102 4.102 25 H 0.091 0.909 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.713 16.252 10.922 29.238 hybrid contribution -1.101 1.263 0.814 1.863 sum -22.813 17.515 11.736 31.064 Atomic orbital electron populations 1.21893 0.95237 1.01916 1.01654 1.21203 0.95513 0.99546 0.94390 0.91197 1.21559 0.94939 1.01002 0.97508 1.21925 0.95629 1.00670 0.98597 1.20927 0.79796 1.00699 0.94579 0.89617 1.46181 1.06819 1.31207 1.54542 1.21064 0.90793 0.80442 0.77717 1.90698 1.70623 1.37151 1.42718 1.21782 0.90459 1.02443 1.03216 1.21452 0.97103 0.96104 0.99515 1.21517 0.91866 1.00373 1.00336 1.19232 0.96528 0.92869 0.94464 1.22112 0.91664 1.14667 1.35504 0.93390 1.25870 1.07029 0.92876 0.93457 1.70735 1.10206 1.33785 1.40445 0.83508 0.74367 0.76140 0.75920 1.21519 1.21554 1.21031 1.21865 0.95810 1.00870 0.97316 1.21100 0.94191 1.00132 0.94816 0.90899 1.21883 1.01240 1.00381 0.97078 0.92656 0.92402 0.92778 0.91715 0.91689 0.91934 0.91295 0.76813 0.89177 0.89183 0.91898 0.91896 0.93321 0.93326 0.97514 0.97497 0.92011 0.91284 0.91426 0.92212 0.92700 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.84 37.16 0.33 -0.52 16 2 C -0.09 -0.56 2.25 -90.62 -0.20 -0.77 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 5 C -0.13 -1.21 5.49 -26.73 -0.15 -1.36 16 6 C 0.14 1.38 2.45 -67.93 -0.17 1.21 16 7 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 8 N -0.74 -7.45 5.08 -53.80 -0.27 -7.72 16 9 C 0.51 7.22 7.79 -10.98 -0.09 7.14 16 10 O -0.54 -9.86 15.65 5.55 0.09 -9.77 16 11 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 12 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 13 C -0.10 -2.19 5.15 -26.73 -0.14 -2.33 16 14 C 0.01 0.16 4.28 -27.88 -0.12 0.04 16 15 C -0.60 -17.81 9.11 -34.44 -0.31 -18.12 16 16 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 17 C 0.01 0.33 5.46 -17.82 -0.10 0.24 16 18 N -0.92 -29.17 13.65 55.43 0.76 -28.42 16 19 Si 1.07 26.07 29.90 -169.99 -5.08 20.99 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.12 -0.83 4.67 -26.73 -0.12 -0.96 16 24 C -0.08 -0.53 2.25 -90.62 -0.20 -0.74 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 C -0.15 -0.80 8.84 37.16 0.33 -0.47 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.29 6.43 -51.93 -0.33 -0.04 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 2.89 8.60 -40.82 -0.35 2.54 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 42 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 43 H 0.27 8.60 7.22 -40.82 -0.29 8.31 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 47 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -34.15 374.09 -9.58 -43.73 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -9.35 Total: -2.74 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.36 Total: -21.71 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.48 Total: -36.14 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.15 -9.58 -43.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.802 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds